Difference between revisions of "Lnc-SOX9-2:4"

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sequence = <dnaseq>CGCATCCCAGGAAGAAGGAGTTGGAGCTCCGTGATGCCATTCAAAAACAGATGAGATGGGGACAGATTTAACCCAAAGGACATAGTTCAACTCCTGGTCTTGACAGAGGAGAAGCCCTCAAAGATGGAGTCTCACTCTGTTGCCAGGCTAGAATACAATGGCACGAACTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGAGATTCTCCTGCCTCAGCGTCCTGAGTTGCTGGGACTACGGGCACACACCATCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGACCAGGATGGTCTCGATCTCTTGACCTCGTGATCTGCCCACGTCGGCCTCCCAAAGTCCTGGGATTACAGGCATGAGCCAGTGCGCCTAGCAAACGACAGCTTTTTGAGCCTCTGTTTAACAATCTCTTAAACCTTATAGGTAGGCAGTTCTGAGACAGCTCCTAATCATCTCCCCTCCTGGTATTCAAGCCCTGATGGAATACTCTCTTCTTCAATGTGAGCTGGACTTAGTGGTTTTCTTCTAATCCATTGAATACACACAAGTGATGAGCTGTCATTTCCAAAATTAGTTCACACAAAGCTGTAACTTTTGTTTTGTTCACAGCCTCTCTCAATTGCCTTCTCAGCTTGTATGCTTTGAAGAAGCAAGCTGCAGTGTTGGAGAGGCCCATGTGGCAAGGAAATGAGGGTGGCCTCCAGTCAATGGCTGGTGAGAAACTGAGACCTTCCTTCCAACAATTGTCAAGTAACTGAATACTCCCAACAATCATATGGGTTAGGTTAGAAGTGAACCTTTCTCTAGTTGAGGTTTCAGATAAGACCACAGATATTATACTAACACCTTGATTGCAGGCTTATGAGAAACCTTGAAATGAGAAGACTAAGTAAAACCATATCTGGATTCCTGACTTGCAGAAACTGTGTGATGATAAATGTGTGTTATCTTAAGCCACAAAGTTTTTGGGGTGATTTGTTCTACAGCAATTGATAATGAATACTTCAACCTATAGTGACAACTGGATGTCTATTTACTCATTTTCCCCACCAAAGTGTAAAGTTCCTACAAGGCAGAGGTTACAACATATTCATCCTGCTACCTCTCACAGCCCATAATATACAACCTGACCCATAAAACATGATTAATCAATGTTTGTTAAATTAACATGTATTTTGAGTTTCATTGAAATCAGTTAGTTGAAGTGATAATAACATTTAAATGTGCATGAGCAGTAGGACAAGGCAGATAGCTGGTTAGGATAGAAAGTTTTTGAAAATTGTGAGGGGAAAAATTATTTCTATTTGTACCCTGTTGTACCCAGCTTAGGTTTCAAAAACTTTCAGGGGGTTTTTATTCATTTACCAAAGACTTCAAAGTTGGTGCCTCCCCACCACTCTAAAGAGGTCTTTGCCCTTATTGACCCAACCATACTGATTTGCCTGGTGCACAGTGGGAGCTATTATAAGGAGAGGGGAGAAGAAGGAAATAGAAACAACTGTGAAAAAGGTTGAAAAAAATAGCGAAAAGGATAGAAAAAGAGCAGAGGAAAGAGAAGAAGTAGTCAACATCCAACCCAGATGCAGAGAAATGATTCAAAAGAAAAAGTCTGATTTTCCTGTCGGAAATATTTTTAAAAGGAGGTAGGCATTTATCAAAAAGGAAAAAAAAAAAAAAAGAATAACAGAGTTTGTCTTCCAAAGGACCCAATACTCTTGGAATTCAATGACCTAATTCTGTGTATGGTTGCAGTGTGGAGATTGCCTCTTGTCTGAT</dnaseq>|
 
sequence = <dnaseq>CGCATCCCAGGAAGAAGGAGTTGGAGCTCCGTGATGCCATTCAAAAACAGATGAGATGGGGACAGATTTAACCCAAAGGACATAGTTCAACTCCTGGTCTTGACAGAGGAGAAGCCCTCAAAGATGGAGTCTCACTCTGTTGCCAGGCTAGAATACAATGGCACGAACTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGAGATTCTCCTGCCTCAGCGTCCTGAGTTGCTGGGACTACGGGCACACACCATCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGACCAGGATGGTCTCGATCTCTTGACCTCGTGATCTGCCCACGTCGGCCTCCCAAAGTCCTGGGATTACAGGCATGAGCCAGTGCGCCTAGCAAACGACAGCTTTTTGAGCCTCTGTTTAACAATCTCTTAAACCTTATAGGTAGGCAGTTCTGAGACAGCTCCTAATCATCTCCCCTCCTGGTATTCAAGCCCTGATGGAATACTCTCTTCTTCAATGTGAGCTGGACTTAGTGGTTTTCTTCTAATCCATTGAATACACACAAGTGATGAGCTGTCATTTCCAAAATTAGTTCACACAAAGCTGTAACTTTTGTTTTGTTCACAGCCTCTCTCAATTGCCTTCTCAGCTTGTATGCTTTGAAGAAGCAAGCTGCAGTGTTGGAGAGGCCCATGTGGCAAGGAAATGAGGGTGGCCTCCAGTCAATGGCTGGTGAGAAACTGAGACCTTCCTTCCAACAATTGTCAAGTAACTGAATACTCCCAACAATCATATGGGTTAGGTTAGAAGTGAACCTTTCTCTAGTTGAGGTTTCAGATAAGACCACAGATATTATACTAACACCTTGATTGCAGGCTTATGAGAAACCTTGAAATGAGAAGACTAAGTAAAACCATATCTGGATTCCTGACTTGCAGAAACTGTGTGATGATAAATGTGTGTTATCTTAAGCCACAAAGTTTTTGGGGTGATTTGTTCTACAGCAATTGATAATGAATACTTCAACCTATAGTGACAACTGGATGTCTATTTACTCATTTTCCCCACCAAAGTGTAAAGTTCCTACAAGGCAGAGGTTACAACATATTCATCCTGCTACCTCTCACAGCCCATAATATACAACCTGACCCATAAAACATGATTAATCAATGTTTGTTAAATTAACATGTATTTTGAGTTTCATTGAAATCAGTTAGTTGAAGTGATAATAACATTTAAATGTGCATGAGCAGTAGGACAAGGCAGATAGCTGGTTAGGATAGAAAGTTTTTGAAAATTGTGAGGGGAAAAATTATTTCTATTTGTACCCTGTTGTACCCAGCTTAGGTTTCAAAAACTTTCAGGGGGTTTTTATTCATTTACCAAAGACTTCAAAGTTGGTGCCTCCCCACCACTCTAAAGAGGTCTTTGCCCTTATTGACCCAACCATACTGATTTGCCTGGTGCACAGTGGGAGCTATTATAAGGAGAGGGGAGAAGAAGGAAATAGAAACAACTGTGAAAAAGGTTGAAAAAAATAGCGAAAAGGATAGAAAAAGAGCAGAGGAAAGAGAAGAAGTAGTCAACATCCAACCCAGATGCAGAGAAATGATTCAAAAGAAAAAGTCTGATTTTCCTGTCGGAAATATTTTTAAAAGGAGGTAGGCATTTATCAAAAAGGAAAAAAAAAAAAAAAGAATAACAGAGTTTGTCTTCCAAAGGACCCAATACTCTTGGAATTCAATGACCTAATTCTGTGTATGGTTGCAGTGTGGAGATTGCCTCTTGTCTGAT</dnaseq>|
 
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[[Category:Intergenic]][[Category:lnc-SOX9-2]]
+
[[Category:Intergenic]][[Category:lnc-SOX9-2]][[Category:Transcripts]]

Latest revision as of 05:22, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-SOX9-2:4

Source

LNCipedia2.1

Same with

,

Classification

intergenic

Length

1800 nt

Genomic location

chr17+:70026957..70035822

Exon number

3

Exons

70026957..70026992,70033186..70033272,70034146..70035822

Genome context

Sequence
000001 CGCATCCCAG GAAGAAGGAG TTGGAGCTCC GTGATGCCAT TCAAAAACAG ATGAGATGGG GACAGATTTA ACCCAAAGGA 000080
000081 CATAGTTCAA CTCCTGGTCT TGACAGAGGA GAAGCCCTCA AAGATGGAGT CTCACTCTGT TGCCAGGCTA GAATACAATG 000160
000161 GCACGAACTT GGCTCACTGC AACCTCCGCC TCCTGGGTTC AAGAGATTCT CCTGCCTCAG CGTCCTGAGT TGCTGGGACT 000240
000241 ACGGGCACAC ACCATCATGC CCAGCTAATT TTTGTATTTT TAGTAGAGAC AGGGTTTCAC CATGTTGACC AGGATGGTCT 000320
000321 CGATCTCTTG ACCTCGTGAT CTGCCCACGT CGGCCTCCCA AAGTCCTGGG ATTACAGGCA TGAGCCAGTG CGCCTAGCAA 000400
000401 ACGACAGCTT TTTGAGCCTC TGTTTAACAA TCTCTTAAAC CTTATAGGTA GGCAGTTCTG AGACAGCTCC TAATCATCTC 000480
000481 CCCTCCTGGT ATTCAAGCCC TGATGGAATA CTCTCTTCTT CAATGTGAGC TGGACTTAGT GGTTTTCTTC TAATCCATTG 000560
000561 AATACACACA AGTGATGAGC TGTCATTTCC AAAATTAGTT CACACAAAGC TGTAACTTTT GTTTTGTTCA CAGCCTCTCT 000640
000641 CAATTGCCTT CTCAGCTTGT ATGCTTTGAA GAAGCAAGCT GCAGTGTTGG AGAGGCCCAT GTGGCAAGGA AATGAGGGTG 000720
000721 GCCTCCAGTC AATGGCTGGT GAGAAACTGA GACCTTCCTT CCAACAATTG TCAAGTAACT GAATACTCCC AACAATCATA 000800
000801 TGGGTTAGGT TAGAAGTGAA CCTTTCTCTA GTTGAGGTTT CAGATAAGAC CACAGATATT ATACTAACAC CTTGATTGCA 000880
000881 GGCTTATGAG AAACCTTGAA ATGAGAAGAC TAAGTAAAAC CATATCTGGA TTCCTGACTT GCAGAAACTG TGTGATGATA 000960
000961 AATGTGTGTT ATCTTAAGCC ACAAAGTTTT TGGGGTGATT TGTTCTACAG CAATTGATAA TGAATACTTC AACCTATAGT 001040
001041 GACAACTGGA TGTCTATTTA CTCATTTTCC CCACCAAAGT GTAAAGTTCC TACAAGGCAG AGGTTACAAC ATATTCATCC 001120
001121 TGCTACCTCT CACAGCCCAT AATATACAAC CTGACCCATA AAACATGATT AATCAATGTT TGTTAAATTA ACATGTATTT 001200
001201 TGAGTTTCAT TGAAATCAGT TAGTTGAAGT GATAATAACA TTTAAATGTG CATGAGCAGT AGGACAAGGC AGATAGCTGG 001280
001281 TTAGGATAGA AAGTTTTTGA AAATTGTGAG GGGAAAAATT ATTTCTATTT GTACCCTGTT GTACCCAGCT TAGGTTTCAA 001360
001361 AAACTTTCAG GGGGTTTTTA TTCATTTACC AAAGACTTCA AAGTTGGTGC CTCCCCACCA CTCTAAAGAG GTCTTTGCCC 001440
001441 TTATTGACCC AACCATACTG ATTTGCCTGG TGCACAGTGG GAGCTATTAT AAGGAGAGGG GAGAAGAAGG AAATAGAAAC 001520
001521 AACTGTGAAA AAGGTTGAAA AAAATAGCGA AAAGGATAGA AAAAGAGCAG AGGAAAGAGA AGAAGTAGTC AACATCCAAC 001600
001601 CCAGATGCAG AGAAATGATT CAAAAGAAAA AGTCTGATTT TCCTGTCGGA AATATTTTTA AAAGGAGGTA GGCATTTATC 001680
001681 AAAAAGGAAA AAAAAAAAAA AAGAATAACA GAGTTTGTCT TCCAAAGGAC CCAATACTCT TGGAATTCAA TGACCTAATT 001760
001761 CTGTGTATGG TTGCAGTGTG GAGATTGCCT CTTGTCTGAT
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