Difference between revisions of "Lnc-SPRYD7-1:5"

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sequence = <dnaseq>GATGCCTGATCTCATCAATCTAGCGGGAGAGACAGGATAACCTGTCCGAGAGTATAGCGCCACTATGACTCCGCCGGAAAAATTACTTTAAAAATCGCCAAAAATTACTTGGAGCAAAGGGCAGTCGGCGGAGCTTCGCCAAGGCTGGCGCAGTCGCCGTTTTCTCGACCCGGTGATGGCCGTCATCTCGTGACAAGAAACTTAAGGTCGACAGAAAATTCAGGACCCGGAGTCATGGGTCCCTCCGGTGGGTCGTGGCAACAGTCCCCCCCGCCACCGCCCGGCACCCATCTATCTATATTGTCTTTTGACGCTGAAGCGTGAGGTGCCCCAGGAAAGAGTTTCCCAAGCCCTGGCTGCCCTCCCCCGGCGCGCTGGGTCCCGGTGAGGTCTCTAGGTAGGTTTTGACCTGTAGCAGAGAACCAATTCTGGAGAACAGCCTCACTTCTTTGATTGAATACTTACATAATGCATTGGAACATGACATGAGATTAAGGTTTAATAATGATAGAATGAAGACCACAATAAAAGAGACCTCTACTTAGCTCAGCAATTCTTACCTTTCTTACCTATTTGATGAAGATGTCTTTTGAAAGGTGTACTGCAAGGAACAAAATGTTTGTAAATTCTCCTTTTACCAAGGTTTCTTTTTTAATTGATGCCAAAGAGTTCCAATATTGAACATCTTAAGTCTGTTACTTGGATTACGGATTGAGTTTGGAGCTTACTCAGAGGACTACAGGAGAGTATCCAGGAAGTGGATAATTACTGTACCTTCCTCATGGAAAAAGTTTTATTTAAAGTGTTATTTCTCATTGAATACTATCAAAAAGGAAAAAAAAATGACCTAAACTTTTGAGATAGATTTGGCTCTAGTAAGTATTTAGTTATATCACTTGCATATCTGGGAGAAGAAATAAGAGACTATCATCAGTACATTCCCATCTACTAAAAAAATTTATTTTACACATGTCAAGGGATTACTTATAACTTCCATTTTATTACTAATAGCTTGAACCCTTTTAATGAAGACCTAACTCCTCCACCAGAAATTTAAGTTTATGTTCTTACTTTGTTTACTTATAAAATACATCTCAGGTATTTCGGATGTCTTTTTTTTTTCTAAGCCTATATGAAATGAAAAATATATTGGCAAAATAAATGTTTAAACCTTTTACGTTAAAATTACTTTGAAAGATGAAAAGTTAGTGCTGTTTTTGTCTACGTTATACTGAAATTAAATGTTTATAATTTATATTTTGGGTTTATGTATAAATCATGGAATTTATGCAAAAATATGAGTAGTACAGATTCTCCTCTAATTCTGTAGGACTTTGAATAATGTGATATTTTTCTTATAATTGGACCCTTGTGTTTTGAAGAAATGCCAACTGCTTGAAGAATCTCCTTGTTATTTGTATTATTTGCTATAGGGTTAGATGTTGAGAAATTCTGCTGACAAAAAATTTTAAGCCAGTTTTACACTAAATGTTCCTCAGTCTGATTAATTTGTTATTGGATGTATTCTGTATCTTTCTTTTGTAATTTGTAACTTTTATCCACTTAGCACGAATGATTCTATTAAAGAAAATCATTAGGAAGTGGTAGAAACTTTAAATCGCCCCAGAGTTTGCCTGTTTCCATATTTTATTATCTTATAATCTTCGGGAGTGCTTACACTTATGGAGCTAACATTTTCAGAGATACAGCTTCTTATAGTAACACTAAAACTTTCTTCCTCTTTGGACTGAATACCTATAATTATAACTATATGGTAGTTTAAGTTTCCTTGTGATTAGTCAAAAATACCATTTTAGTATGAAGCAATGAAGTCTATTATTTGTTGTCCCATAATTGAGAAAGCTTAAATACACCTTTTATTAAGAGTTTGTAAATTCTAGCTTAGTCTACACAGATTTTTATATCAATTTGTTTATATTTTTATTAATGTCATTTCTGGAAGTGTGAAAATGTTAATGTTCAACAAGCAACATTAAAAATAGATTTGAAACATTTATATATAGAGAGGTACACATTTATTTACTGTTTAGGTACTGAAGATTATCACTTAATAAAAAATATATATCCCA</dnaseq>|
 
sequence = <dnaseq>GATGCCTGATCTCATCAATCTAGCGGGAGAGACAGGATAACCTGTCCGAGAGTATAGCGCCACTATGACTCCGCCGGAAAAATTACTTTAAAAATCGCCAAAAATTACTTGGAGCAAAGGGCAGTCGGCGGAGCTTCGCCAAGGCTGGCGCAGTCGCCGTTTTCTCGACCCGGTGATGGCCGTCATCTCGTGACAAGAAACTTAAGGTCGACAGAAAATTCAGGACCCGGAGTCATGGGTCCCTCCGGTGGGTCGTGGCAACAGTCCCCCCCGCCACCGCCCGGCACCCATCTATCTATATTGTCTTTTGACGCTGAAGCGTGAGGTGCCCCAGGAAAGAGTTTCCCAAGCCCTGGCTGCCCTCCCCCGGCGCGCTGGGTCCCGGTGAGGTCTCTAGGTAGGTTTTGACCTGTAGCAGAGAACCAATTCTGGAGAACAGCCTCACTTCTTTGATTGAATACTTACATAATGCATTGGAACATGACATGAGATTAAGGTTTAATAATGATAGAATGAAGACCACAATAAAAGAGACCTCTACTTAGCTCAGCAATTCTTACCTTTCTTACCTATTTGATGAAGATGTCTTTTGAAAGGTGTACTGCAAGGAACAAAATGTTTGTAAATTCTCCTTTTACCAAGGTTTCTTTTTTAATTGATGCCAAAGAGTTCCAATATTGAACATCTTAAGTCTGTTACTTGGATTACGGATTGAGTTTGGAGCTTACTCAGAGGACTACAGGAGAGTATCCAGGAAGTGGATAATTACTGTACCTTCCTCATGGAAAAAGTTTTATTTAAAGTGTTATTTCTCATTGAATACTATCAAAAAGGAAAAAAAAATGACCTAAACTTTTGAGATAGATTTGGCTCTAGTAAGTATTTAGTTATATCACTTGCATATCTGGGAGAAGAAATAAGAGACTATCATCAGTACATTCCCATCTACTAAAAAAATTTATTTTACACATGTCAAGGGATTACTTATAACTTCCATTTTATTACTAATAGCTTGAACCCTTTTAATGAAGACCTAACTCCTCCACCAGAAATTTAAGTTTATGTTCTTACTTTGTTTACTTATAAAATACATCTCAGGTATTTCGGATGTCTTTTTTTTTTCTAAGCCTATATGAAATGAAAAATATATTGGCAAAATAAATGTTTAAACCTTTTACGTTAAAATTACTTTGAAAGATGAAAAGTTAGTGCTGTTTTTGTCTACGTTATACTGAAATTAAATGTTTATAATTTATATTTTGGGTTTATGTATAAATCATGGAATTTATGCAAAAATATGAGTAGTACAGATTCTCCTCTAATTCTGTAGGACTTTGAATAATGTGATATTTTTCTTATAATTGGACCCTTGTGTTTTGAAGAAATGCCAACTGCTTGAAGAATCTCCTTGTTATTTGTATTATTTGCTATAGGGTTAGATGTTGAGAAATTCTGCTGACAAAAAATTTTAAGCCAGTTTTACACTAAATGTTCCTCAGTCTGATTAATTTGTTATTGGATGTATTCTGTATCTTTCTTTTGTAATTTGTAACTTTTATCCACTTAGCACGAATGATTCTATTAAAGAAAATCATTAGGAAGTGGTAGAAACTTTAAATCGCCCCAGAGTTTGCCTGTTTCCATATTTTATTATCTTATAATCTTCGGGAGTGCTTACACTTATGGAGCTAACATTTTCAGAGATACAGCTTCTTATAGTAACACTAAAACTTTCTTCCTCTTTGGACTGAATACCTATAATTATAACTATATGGTAGTTTAAGTTTCCTTGTGATTAGTCAAAAATACCATTTTAGTATGAAGCAATGAAGTCTATTATTTGTTGTCCCATAATTGAGAAAGCTTAAATACACCTTTTATTAAGAGTTTGTAAATTCTAGCTTAGTCTACACAGATTTTTATATCAATTTGTTTATATTTTTATTAATGTCATTTCTGGAAGTGTGAAAATGTTAATGTTCAACAAGCAACATTAAAAATAGATTTGAAACATTTATATATAGAGAGGTACACATTTATTTACTGTTTAGGTACTGAAGATTATCACTTAATAAAAAATATATATCCCA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-SPRYD7-1]][[Category:NONHSAG013515]]
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[[Category:Intergenic]][[Category:lnc-SPRYD7-1]][[Category:NONHSAG013515]][[Category:Transcripts]]

Latest revision as of 05:23, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-SPRYD7-1:5

Source

LNCipedia2.1

Same with

NONHSAT033791

Classification

intergenic

Length

2090 nt

Genomic location

chr13-:50617572..50656114

Exon number

7

Exons

50617572..50618904,50619254..50619368,50623720..50623798,50642233..50642299,50649695..50649789,50655304..50655548,50655959..50656114

Genome context

Sequence
000001 GATGCCTGAT CTCATCAATC TAGCGGGAGA GACAGGATAA CCTGTCCGAG AGTATAGCGC CACTATGACT CCGCCGGAAA 000080
000081 AATTACTTTA AAAATCGCCA AAAATTACTT GGAGCAAAGG GCAGTCGGCG GAGCTTCGCC AAGGCTGGCG CAGTCGCCGT 000160
000161 TTTCTCGACC CGGTGATGGC CGTCATCTCG TGACAAGAAA CTTAAGGTCG ACAGAAAATT CAGGACCCGG AGTCATGGGT 000240
000241 CCCTCCGGTG GGTCGTGGCA ACAGTCCCCC CCGCCACCGC CCGGCACCCA TCTATCTATA TTGTCTTTTG ACGCTGAAGC 000320
000321 GTGAGGTGCC CCAGGAAAGA GTTTCCCAAG CCCTGGCTGC CCTCCCCCGG CGCGCTGGGT CCCGGTGAGG TCTCTAGGTA 000400
000401 GGTTTTGACC TGTAGCAGAG AACCAATTCT GGAGAACAGC CTCACTTCTT TGATTGAATA CTTACATAAT GCATTGGAAC 000480
000481 ATGACATGAG ATTAAGGTTT AATAATGATA GAATGAAGAC CACAATAAAA GAGACCTCTA CTTAGCTCAG CAATTCTTAC 000560
000561 CTTTCTTACC TATTTGATGA AGATGTCTTT TGAAAGGTGT ACTGCAAGGA ACAAAATGTT TGTAAATTCT CCTTTTACCA 000640
000641 AGGTTTCTTT TTTAATTGAT GCCAAAGAGT TCCAATATTG AACATCTTAA GTCTGTTACT TGGATTACGG ATTGAGTTTG 000720
000721 GAGCTTACTC AGAGGACTAC AGGAGAGTAT CCAGGAAGTG GATAATTACT GTACCTTCCT CATGGAAAAA GTTTTATTTA 000800
000801 AAGTGTTATT TCTCATTGAA TACTATCAAA AAGGAAAAAA AAATGACCTA AACTTTTGAG ATAGATTTGG CTCTAGTAAG 000880
000881 TATTTAGTTA TATCACTTGC ATATCTGGGA GAAGAAATAA GAGACTATCA TCAGTACATT CCCATCTACT AAAAAAATTT 000960
000961 ATTTTACACA TGTCAAGGGA TTACTTATAA CTTCCATTTT ATTACTAATA GCTTGAACCC TTTTAATGAA GACCTAACTC 001040
001041 CTCCACCAGA AATTTAAGTT TATGTTCTTA CTTTGTTTAC TTATAAAATA CATCTCAGGT ATTTCGGATG TCTTTTTTTT 001120
001121 TTCTAAGCCT ATATGAAATG AAAAATATAT TGGCAAAATA AATGTTTAAA CCTTTTACGT TAAAATTACT TTGAAAGATG 001200
001201 AAAAGTTAGT GCTGTTTTTG TCTACGTTAT ACTGAAATTA AATGTTTATA ATTTATATTT TGGGTTTATG TATAAATCAT 001280
001281 GGAATTTATG CAAAAATATG AGTAGTACAG ATTCTCCTCT AATTCTGTAG GACTTTGAAT AATGTGATAT TTTTCTTATA 001360
001361 ATTGGACCCT TGTGTTTTGA AGAAATGCCA ACTGCTTGAA GAATCTCCTT GTTATTTGTA TTATTTGCTA TAGGGTTAGA 001440
001441 TGTTGAGAAA TTCTGCTGAC AAAAAATTTT AAGCCAGTTT TACACTAAAT GTTCCTCAGT CTGATTAATT TGTTATTGGA 001520
001521 TGTATTCTGT ATCTTTCTTT TGTAATTTGT AACTTTTATC CACTTAGCAC GAATGATTCT ATTAAAGAAA ATCATTAGGA 001600
001601 AGTGGTAGAA ACTTTAAATC GCCCCAGAGT TTGCCTGTTT CCATATTTTA TTATCTTATA ATCTTCGGGA GTGCTTACAC 001680
001681 TTATGGAGCT AACATTTTCA GAGATACAGC TTCTTATAGT AACACTAAAA CTTTCTTCCT CTTTGGACTG AATACCTATA 001760
001761 ATTATAACTA TATGGTAGTT TAAGTTTCCT TGTGATTAGT CAAAAATACC ATTTTAGTAT GAAGCAATGA AGTCTATTAT 001840
001841 TTGTTGTCCC ATAATTGAGA AAGCTTAAAT ACACCTTTTA TTAAGAGTTT GTAAATTCTA GCTTAGTCTA CACAGATTTT 001920
001921 TATATCAATT TGTTTATATT TTTATTAATG TCATTTCTGG AAGTGTGAAA ATGTTAATGT TCAACAAGCA ACATTAAAAA 002000
002001 TAGATTTGAA ACATTTATAT ATAGAGAGGT ACACATTTAT TTACTGTTTA GGTACTGAAG ATTATCACTT AATAAAAAAT 002080
002081 ATATATCCCA
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