Difference between revisions of "NONHSAT120461"

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sequence = <dnaseq>TGCACATTTAAGTTATGTATTACATGTCTTTAGTGGTGATCACTATTTTATCAGTTCCTCTGTCTTTCTTTATACCAAGTATGACTCATAAACCCAGTATTAATTTTCCAAGAGATTGGCATACTATTTGTATATACGCTTTTCTTTCAAATAATCTGGATTCCCAATGCCCACAATCATTGATCCTAAAGAAAATGTGGGAGTAGGTAGATAAACTCAAACATCCCTACCATCACCCCTGGTAGGAAATCACTGGTGTAATGTATGATACTAACATCTGCACCAATTACTCTTATAGGTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTATTCAGTTGCTGCTTACAATAGTTGATACCCCAGGATTTGGAGATGCAGTGGATAATAGTAATTGCTGGCAGCCTGTTATCAATTACATTGATAGTAAATTTGAGGACTACCTAAATGCAGAATCGCAAGTGAACAGATGTCAGATGCCTGGTAACAGGGTGCACTGTTGTTTATACTTCATTGCTCCTTCAGGACATGGGTCAGTAACCTGATACTTCTGATTCCTTTTTGTTGTTGTTGCTTACTGTTACCTTTATG</dnaseq>|
 
sequence = <dnaseq>TGCACATTTAAGTTATGTATTACATGTCTTTAGTGGTGATCACTATTTTATCAGTTCCTCTGTCTTTCTTTATACCAAGTATGACTCATAAACCCAGTATTAATTTTCCAAGAGATTGGCATACTATTTGTATATACGCTTTTCTTTCAAATAATCTGGATTCCCAATGCCCACAATCATTGATCCTAAAGAAAATGTGGGAGTAGGTAGATAAACTCAAACATCCCTACCATCACCCCTGGTAGGAAATCACTGGTGTAATGTATGATACTAACATCTGCACCAATTACTCTTATAGGTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTATTCAGTTGCTGCTTACAATAGTTGATACCCCAGGATTTGGAGATGCAGTGGATAATAGTAATTGCTGGCAGCCTGTTATCAATTACATTGATAGTAAATTTGAGGACTACCTAAATGCAGAATCGCAAGTGAACAGATGTCAGATGCCTGGTAACAGGGTGCACTGTTGTTTATACTTCATTGCTCCTTCAGGACATGGGTCAGTAACCTGATACTTCTGATTCCTTTTTGTTGTTGTTGCTTACTGTTACCTTTATG</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG047517]]
+
[[Category:Intergenic]][[Category:NONHSAG047517]][[Category:Transcripts]]

Latest revision as of 06:33, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT120461

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

593 nt

Genomic location

chr7-:45797583..45799071

Exon number

2

Exons

45797583..45797776,45798673..45799071

Genome context

Sequence
000001 TGCACATTTA AGTTATGTAT TACATGTCTT TAGTGGTGAT CACTATTTTA TCAGTTCCTC TGTCTTTCTT TATACCAAGT 000080
000081 ATGACTCATA AACCCAGTAT TAATTTTCCA AGAGATTGGC ATACTATTTG TATATACGCT TTTCTTTCAA ATAATCTGGA 000160
000161 TTCCCAATGC CCACAATCAT TGATCCTAAA GAAAATGTGG GAGTAGGTAG ATAAACTCAA ACATCCCTAC CATCACCCCT 000240
000241 GGTAGGAAAT CACTGGTGTA ATGTATGATA CTAACATCTG CACCAATTAC TCTTATAGGT GGAACAATCC AAAGTTTTAA 000320
000321 TCAAAGAAGG TGGTATTCAG TTGCTGCTTA CAATAGTTGA TACCCCAGGA TTTGGAGATG CAGTGGATAA TAGTAATTGC 000400
000401 TGGCAGCCTG TTATCAATTA CATTGATAGT AAATTTGAGG ACTACCTAAA TGCAGAATCG CAAGTGAACA GATGTCAGAT 000480
000481 GCCTGGTAAC AGGGTGCACT GTTGTTTATA CTTCATTGCT CCTTCAGGAC ATGGGTCAGT AACCTGATAC TTCTGATTCC 000560
000561 TTTTTGTTGT TGTTGCTTAC TGTTACCTTT ATG
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Predicted Small Protein

Name NONHSAT120461_smProtein_14:205
Length 64
Molecular weight 7410.7393
Aromaticity 0.142857142857
Instability index 74.0698412698
Isoelectric point 7.81732177734
Runs 10
Runs residual 0.0137674117266
Runs probability 0.0447624094683
Amino acid sequence MYYMSLVVITILSVPLSFFIPSMTHKPSINFPRDWHTICIYAFLSNNLDSQCPQSLILKK
MWE
Secondary structure LEEEEEEEEEEEELLLEEEELLLLLLLLLLLLLLLLEEEEEHHHHLLLLLLLLHHHHHHH
HHL
PRMN LLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLL
PiMo i???????????????????????????????????????????????????????????
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