Difference between revisions of "NONHSAT121189"
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sequence = <dnaseq>CGGCGACGTCACAGTGGCGCTACAGTGCCTGGAGCTGCGCTGGTTTTTCCTCGGAGTGGAGCCTGGTAACCGCGACTTCCCCGCCATGTTCTGTGTGTTGCTGGCTGGAGAAGGGTGGTTGACAAACTCCGACCCAGCACAGTGTTTCTGTGGGTCAAAACTAGAAAACTATGTCCAGGCTCggccgaggcggaaggatccgttcaggccaggagttaaagagctgcctgggcaacatggcgcgaccccatctctGTAGTCCCACCTCAGCTTCCCAGATActtgaaccccaaggttcaaggctgcaatgagctatgatcccatcacagcactccatcctgcgagacggaggtaaaccttgtctaaaaaaataaaCTATCCAAGTGTACAACAGGGAGGGACTGCTTAAAGAAAACATGATAATTGTATGTTCAAATACTTTTAACAAGTGCAAAATGTATAGGCTGAAATAAATAGGGCTggccgggcacgttggctcacgcctgtaaattccaacattttgtgtgctcgaggcattccgatcagtagacatgggtgaaaccccatgtctactaaaaatataaaaattaggccaggAACTTTGCATCGTTTTAGGGGGCTCGCATCTCCCTAAGGGCCCGGTAATTGAACCCCTTGGACCTGAGGGTGAGAAACCTTGGCTCAGTTCTTCCCAGGGTGATCAGCCCAGGGGTAAGCGAGGAGAGACCAGAAAACAGGACCCATGAGAAGGTCCCCCTCCTGGAGTTTGAGGCCCATTCCTTCTTGTCCCTGCGTCTCCTCTTTCCAGGACTCCTCCCTGCTCTGCCCCACTCCTGGGAGTGGGGTCATGGCCATGGGGGGCTGCTTTTGGGTACAGGCCCCAGCGGCAACCCTGGGCCCAAAGTGGGCAGGCTCACCTGGAGGGGATCAGAGTCACATGGCAAGACGCAAGGGGAAAAGCCGCGCTGGAACCGCACCTCTCTGCCCCCTGATGTCAGTGGGTGCACTCTTCCCTCACCTCACTCAGGCAGCGGCTTGAGTTCCATGGGAGCACTGTCCTGCTCCCTCTGCTGCCTCTTTTTAGTCTTGGGGCTACTATAACACTTTCCCTTCCCCAGCCCTGCCAACCTGGTGGGACATTGGGCTTCCCTCTTCCTGGGGACAGGCGGGTCCTGGGGACAAGCCTGTCCTGTATCATACCTGCAGCGAGACTCTTTTTTTCTCCAGGACCTGCGGAGCAGCCAGGCTTCATGAGTTAAATGCAGATCTGAACCATACCCAGTTGGGATTGGGGTACACACTCTACTCCTCTGAAAACTAGCTAGGGGTTCGAACTTGGTGAGAGGGAGAGTGGGACAGAGCCAGACCAGACAAGGACTGATCACCTGGAAAAACCTGCCATCAAAGACCTTGACGAGTgctgggggcggtggctcatgcctgtaatcccaacactttgggaggctgagacaggtggatcacttgaggccaggagttcgagtcccgcctgggcaacatggcaaaaccctgtctctactaaaaatacaaaaattagctaggtatgctatgctcctgtaatcccagctactcgggaggttgaggcaggagaatcgtttgaactggggaggtagaggttgcagtgagctgagattgtgtcactgccctccagcctgggtgacagagtgagactccgtctcaaaaaaaaaaaaaaaaCCCACCTGAAGAAGGTTTCCAGTTCTGCCAGCAGTCCCCCATCCAACCCCCAGAAGCAGACATTCCTTTGCTGTGGGCCATGGACAGGCAGAAGGAAGCGCCTCCTCATGGCAGAGGCCTACCCAGGAGAAACCCAAGGGAAGGCACTGCCTGGCCAGCCCCTCTGCCAAAGCCATTTTCttttttcctttttttttttttttttttttgagacacagtttcactctgtctcccagactggagtgcagtggcatgatcttggctcacttcaaccttcaccccctcccccgccccctgccgggttcaagtgattcccatgtttcagcttcctgagtagctgagattgcaggcatgcgccaccacacctgtctaatttttgtagagacggggtttcaccatgttggccaggctggtctggaactcctgacttgaa</dnaseq>| | sequence = <dnaseq>CGGCGACGTCACAGTGGCGCTACAGTGCCTGGAGCTGCGCTGGTTTTTCCTCGGAGTGGAGCCTGGTAACCGCGACTTCCCCGCCATGTTCTGTGTGTTGCTGGCTGGAGAAGGGTGGTTGACAAACTCCGACCCAGCACAGTGTTTCTGTGGGTCAAAACTAGAAAACTATGTCCAGGCTCggccgaggcggaaggatccgttcaggccaggagttaaagagctgcctgggcaacatggcgcgaccccatctctGTAGTCCCACCTCAGCTTCCCAGATActtgaaccccaaggttcaaggctgcaatgagctatgatcccatcacagcactccatcctgcgagacggaggtaaaccttgtctaaaaaaataaaCTATCCAAGTGTACAACAGGGAGGGACTGCTTAAAGAAAACATGATAATTGTATGTTCAAATACTTTTAACAAGTGCAAAATGTATAGGCTGAAATAAATAGGGCTggccgggcacgttggctcacgcctgtaaattccaacattttgtgtgctcgaggcattccgatcagtagacatgggtgaaaccccatgtctactaaaaatataaaaattaggccaggAACTTTGCATCGTTTTAGGGGGCTCGCATCTCCCTAAGGGCCCGGTAATTGAACCCCTTGGACCTGAGGGTGAGAAACCTTGGCTCAGTTCTTCCCAGGGTGATCAGCCCAGGGGTAAGCGAGGAGAGACCAGAAAACAGGACCCATGAGAAGGTCCCCCTCCTGGAGTTTGAGGCCCATTCCTTCTTGTCCCTGCGTCTCCTCTTTCCAGGACTCCTCCCTGCTCTGCCCCACTCCTGGGAGTGGGGTCATGGCCATGGGGGGCTGCTTTTGGGTACAGGCCCCAGCGGCAACCCTGGGCCCAAAGTGGGCAGGCTCACCTGGAGGGGATCAGAGTCACATGGCAAGACGCAAGGGGAAAAGCCGCGCTGGAACCGCACCTCTCTGCCCCCTGATGTCAGTGGGTGCACTCTTCCCTCACCTCACTCAGGCAGCGGCTTGAGTTCCATGGGAGCACTGTCCTGCTCCCTCTGCTGCCTCTTTTTAGTCTTGGGGCTACTATAACACTTTCCCTTCCCCAGCCCTGCCAACCTGGTGGGACATTGGGCTTCCCTCTTCCTGGGGACAGGCGGGTCCTGGGGACAAGCCTGTCCTGTATCATACCTGCAGCGAGACTCTTTTTTTCTCCAGGACCTGCGGAGCAGCCAGGCTTCATGAGTTAAATGCAGATCTGAACCATACCCAGTTGGGATTGGGGTACACACTCTACTCCTCTGAAAACTAGCTAGGGGTTCGAACTTGGTGAGAGGGAGAGTGGGACAGAGCCAGACCAGACAAGGACTGATCACCTGGAAAAACCTGCCATCAAAGACCTTGACGAGTgctgggggcggtggctcatgcctgtaatcccaacactttgggaggctgagacaggtggatcacttgaggccaggagttcgagtcccgcctgggcaacatggcaaaaccctgtctctactaaaaatacaaaaattagctaggtatgctatgctcctgtaatcccagctactcgggaggttgaggcaggagaatcgtttgaactggggaggtagaggttgcagtgagctgagattgtgtcactgccctccagcctgggtgacagagtgagactccgtctcaaaaaaaaaaaaaaaaCCCACCTGAAGAAGGTTTCCAGTTCTGCCAGCAGTCCCCCATCCAACCCCCAGAAGCAGACATTCCTTTGCTGTGGGCCATGGACAGGCAGAAGGAAGCGCCTCCTCATGGCAGAGGCCTACCCAGGAGAAACCCAAGGGAAGGCACTGCCTGGCCAGCCCCTCTGCCAAAGCCATTTTCttttttcctttttttttttttttttttttgagacacagtttcactctgtctcccagactggagtgcagtggcatgatcttggctcacttcaaccttcaccccctcccccgccccctgccgggttcaagtgattcccatgtttcagcttcctgagtagctgagattgcaggcatgcgccaccacacctgtctaatttttgtagagacggggtttcaccatgttggccaggctggtctggaactcctgacttgaa</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG047841]] | + | [[Category:Intergenic]][[Category:NONHSAG047841]][[Category:Transcripts]] |
Latest revision as of 06:36, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121189 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2146 nt |
Genomic location |
chr7-:65956408..65958553 |
Exon number |
1 |
Exons |
65956408..65958553 |
Genome context |
|
Sequence |
000001 CGGCGACGTC ACAGTGGCGC TACAGTGCCT GGAGCTGCGC TGGTTTTTCC TCGGAGTGGA GCCTGGTAAC CGCGACTTCC 000080
000081 CCGCCATGTT CTGTGTGTTG CTGGCTGGAG AAGGGTGGTT GACAAACTCC GACCCAGCAC AGTGTTTCTG TGGGTCAAAA 000160 000161 CTAGAAAACT ATGTCCAGGC TCggccgagg cggaaggatc cgttcaggcc aggagttaaa gagctgcctg ggcaacatgg 000240 000241 cgcgacccca tctctGTAGT CCCACCTCAG CTTCCCAGAT Acttgaaccc caaggttcaa ggctgcaatg agctatgatc 000320 000321 ccatcacagc actccatcct gcgagacgga ggtaaacctt gtctaaaaaa ataaaCTATC CAAGTGTACA ACAGGGAGGG 000400 000401 ACTGCTTAAA GAAAACATGA TAATTGTATG TTCAAATACT TTTAACAAGT GCAAAATGTA TAGGCTGAAA TAAATAGGGC 000480 000481 Tggccgggca cgttggctca cgcctgtaaa ttccaacatt ttgtgtgctc gaggcattcc gatcagtaga catgggtgaa 000560 000561 accccatgtc tactaaaaat ataaaaatta ggccaggAAC TTTGCATCGT TTTAGGGGGC TCGCATCTCC CTAAGGGCCC 000640 000641 GGTAATTGAA CCCCTTGGAC CTGAGGGTGA GAAACCTTGG CTCAGTTCTT CCCAGGGTGA TCAGCCCAGG GGTAAGCGAG 000720 000721 GAGAGACCAG AAAACAGGAC CCATGAGAAG GTCCCCCTCC TGGAGTTTGA GGCCCATTCC TTCTTGTCCC TGCGTCTCCT 000800 000801 CTTTCCAGGA CTCCTCCCTG CTCTGCCCCA CTCCTGGGAG TGGGGTCATG GCCATGGGGG GCTGCTTTTG GGTACAGGCC 000880 000881 CCAGCGGCAA CCCTGGGCCC AAAGTGGGCA GGCTCACCTG GAGGGGATCA GAGTCACATG GCAAGACGCA AGGGGAAAAG 000960 000961 CCGCGCTGGA ACCGCACCTC TCTGCCCCCT GATGTCAGTG GGTGCACTCT TCCCTCACCT CACTCAGGCA GCGGCTTGAG 001040 001041 TTCCATGGGA GCACTGTCCT GCTCCCTCTG CTGCCTCTTT TTAGTCTTGG GGCTACTATA ACACTTTCCC TTCCCCAGCC 001120 001121 CTGCCAACCT GGTGGGACAT TGGGCTTCCC TCTTCCTGGG GACAGGCGGG TCCTGGGGAC AAGCCTGTCC TGTATCATAC 001200 001201 CTGCAGCGAG ACTCTTTTTT TCTCCAGGAC CTGCGGAGCA GCCAGGCTTC ATGAGTTAAA TGCAGATCTG AACCATACCC 001280 001281 AGTTGGGATT GGGGTACACA CTCTACTCCT CTGAAAACTA GCTAGGGGTT CGAACTTGGT GAGAGGGAGA GTGGGACAGA 001360 001361 GCCAGACCAG ACAAGGACTG ATCACCTGGA AAAACCTGCC ATCAAAGACC TTGACGAGTg ctgggggcgg tggctcatgc 001440 001441 ctgtaatccc aacactttgg gaggctgaga caggtggatc acttgaggcc aggagttcga gtcccgcctg ggcaacatgg 001520 001521 caaaaccctg tctctactaa aaatacaaaa attagctagg tatgctatgc tcctgtaatc ccagctactc gggaggttga 001600 001601 ggcaggagaa tcgtttgaac tggggaggta gaggttgcag tgagctgaga ttgtgtcact gccctccagc ctgggtgaca 001680 001681 gagtgagact ccgtctcaaa aaaaaaaaaa aaaCCCACCT GAAGAAGGTT TCCAGTTCTG CCAGCAGTCC CCCATCCAAC 001760 001761 CCCCAGAAGC AGACATTCCT TTGCTGTGGG CCATGGACAG GCAGAAGGAA GCGCCTCCTC ATGGCAGAGG CCTACCCAGG 001840 001841 AGAAACCCAA GGGAAGGCAC TGCCTGGCCA GCCCCTCTGC CAAAGCCATT TTCttttttc cttttttttt tttttttttt 001920 001921 ttgagacaca gtttcactct gtctcccaga ctggagtgca gtggcatgat cttggctcac ttcaaccttc accccctccc 002000 002001 ccgccccctg ccgggttcaa gtgattccca tgtttcagct tcctgagtag ctgagattgc aggcatgcgc caccacacct 002080 002081 gtctaatttt tgtagagacg gggtttcacc atgttggcca ggctggtctg gaactcctga cttgaa |
Predicted Small Protein
Name | NONHSAT121189_smProtein_1820:2023 |
Length | 68 |
Molecular weight | 7475.3423 |
Aromaticity | 0.194029850746 |
Instability index | 54.7194029851 |
Isoelectric point | 5.75152587891 |
Runs | 6 |
Runs residual | 0.0537626006095 |
Runs probability | 0.0577342047931 |
Amino acid sequence | MAEAYPGETQGKALPGQPLCQSHFLFSFFFFFFFETQFHSVSQTGVQWHDLGSLQPSPPP PPPAGFK |
Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHHHHHEEEEEEEEEEEEEELLLLEEEEELLLLLLLLLL LLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL LLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooo ooooooo |