Difference between revisions of "NONHSAT121189"

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sequence = <dnaseq>CGGCGACGTCACAGTGGCGCTACAGTGCCTGGAGCTGCGCTGGTTTTTCCTCGGAGTGGAGCCTGGTAACCGCGACTTCCCCGCCATGTTCTGTGTGTTGCTGGCTGGAGAAGGGTGGTTGACAAACTCCGACCCAGCACAGTGTTTCTGTGGGTCAAAACTAGAAAACTATGTCCAGGCTCggccgaggcggaaggatccgttcaggccaggagttaaagagctgcctgggcaacatggcgcgaccccatctctGTAGTCCCACCTCAGCTTCCCAGATActtgaaccccaaggttcaaggctgcaatgagctatgatcccatcacagcactccatcctgcgagacggaggtaaaccttgtctaaaaaaataaaCTATCCAAGTGTACAACAGGGAGGGACTGCTTAAAGAAAACATGATAATTGTATGTTCAAATACTTTTAACAAGTGCAAAATGTATAGGCTGAAATAAATAGGGCTggccgggcacgttggctcacgcctgtaaattccaacattttgtgtgctcgaggcattccgatcagtagacatgggtgaaaccccatgtctactaaaaatataaaaattaggccaggAACTTTGCATCGTTTTAGGGGGCTCGCATCTCCCTAAGGGCCCGGTAATTGAACCCCTTGGACCTGAGGGTGAGAAACCTTGGCTCAGTTCTTCCCAGGGTGATCAGCCCAGGGGTAAGCGAGGAGAGACCAGAAAACAGGACCCATGAGAAGGTCCCCCTCCTGGAGTTTGAGGCCCATTCCTTCTTGTCCCTGCGTCTCCTCTTTCCAGGACTCCTCCCTGCTCTGCCCCACTCCTGGGAGTGGGGTCATGGCCATGGGGGGCTGCTTTTGGGTACAGGCCCCAGCGGCAACCCTGGGCCCAAAGTGGGCAGGCTCACCTGGAGGGGATCAGAGTCACATGGCAAGACGCAAGGGGAAAAGCCGCGCTGGAACCGCACCTCTCTGCCCCCTGATGTCAGTGGGTGCACTCTTCCCTCACCTCACTCAGGCAGCGGCTTGAGTTCCATGGGAGCACTGTCCTGCTCCCTCTGCTGCCTCTTTTTAGTCTTGGGGCTACTATAACACTTTCCCTTCCCCAGCCCTGCCAACCTGGTGGGACATTGGGCTTCCCTCTTCCTGGGGACAGGCGGGTCCTGGGGACAAGCCTGTCCTGTATCATACCTGCAGCGAGACTCTTTTTTTCTCCAGGACCTGCGGAGCAGCCAGGCTTCATGAGTTAAATGCAGATCTGAACCATACCCAGTTGGGATTGGGGTACACACTCTACTCCTCTGAAAACTAGCTAGGGGTTCGAACTTGGTGAGAGGGAGAGTGGGACAGAGCCAGACCAGACAAGGACTGATCACCTGGAAAAACCTGCCATCAAAGACCTTGACGAGTgctgggggcggtggctcatgcctgtaatcccaacactttgggaggctgagacaggtggatcacttgaggccaggagttcgagtcccgcctgggcaacatggcaaaaccctgtctctactaaaaatacaaaaattagctaggtatgctatgctcctgtaatcccagctactcgggaggttgaggcaggagaatcgtttgaactggggaggtagaggttgcagtgagctgagattgtgtcactgccctccagcctgggtgacagagtgagactccgtctcaaaaaaaaaaaaaaaaCCCACCTGAAGAAGGTTTCCAGTTCTGCCAGCAGTCCCCCATCCAACCCCCAGAAGCAGACATTCCTTTGCTGTGGGCCATGGACAGGCAGAAGGAAGCGCCTCCTCATGGCAGAGGCCTACCCAGGAGAAACCCAAGGGAAGGCACTGCCTGGCCAGCCCCTCTGCCAAAGCCATTTTCttttttcctttttttttttttttttttttgagacacagtttcactctgtctcccagactggagtgcagtggcatgatcttggctcacttcaaccttcaccccctcccccgccccctgccgggttcaagtgattcccatgtttcagcttcctgagtagctgagattgcaggcatgcgccaccacacctgtctaatttttgtagagacggggtttcaccatgttggccaggctggtctggaactcctgacttgaa</dnaseq>|
 
sequence = <dnaseq>CGGCGACGTCACAGTGGCGCTACAGTGCCTGGAGCTGCGCTGGTTTTTCCTCGGAGTGGAGCCTGGTAACCGCGACTTCCCCGCCATGTTCTGTGTGTTGCTGGCTGGAGAAGGGTGGTTGACAAACTCCGACCCAGCACAGTGTTTCTGTGGGTCAAAACTAGAAAACTATGTCCAGGCTCggccgaggcggaaggatccgttcaggccaggagttaaagagctgcctgggcaacatggcgcgaccccatctctGTAGTCCCACCTCAGCTTCCCAGATActtgaaccccaaggttcaaggctgcaatgagctatgatcccatcacagcactccatcctgcgagacggaggtaaaccttgtctaaaaaaataaaCTATCCAAGTGTACAACAGGGAGGGACTGCTTAAAGAAAACATGATAATTGTATGTTCAAATACTTTTAACAAGTGCAAAATGTATAGGCTGAAATAAATAGGGCTggccgggcacgttggctcacgcctgtaaattccaacattttgtgtgctcgaggcattccgatcagtagacatgggtgaaaccccatgtctactaaaaatataaaaattaggccaggAACTTTGCATCGTTTTAGGGGGCTCGCATCTCCCTAAGGGCCCGGTAATTGAACCCCTTGGACCTGAGGGTGAGAAACCTTGGCTCAGTTCTTCCCAGGGTGATCAGCCCAGGGGTAAGCGAGGAGAGACCAGAAAACAGGACCCATGAGAAGGTCCCCCTCCTGGAGTTTGAGGCCCATTCCTTCTTGTCCCTGCGTCTCCTCTTTCCAGGACTCCTCCCTGCTCTGCCCCACTCCTGGGAGTGGGGTCATGGCCATGGGGGGCTGCTTTTGGGTACAGGCCCCAGCGGCAACCCTGGGCCCAAAGTGGGCAGGCTCACCTGGAGGGGATCAGAGTCACATGGCAAGACGCAAGGGGAAAAGCCGCGCTGGAACCGCACCTCTCTGCCCCCTGATGTCAGTGGGTGCACTCTTCCCTCACCTCACTCAGGCAGCGGCTTGAGTTCCATGGGAGCACTGTCCTGCTCCCTCTGCTGCCTCTTTTTAGTCTTGGGGCTACTATAACACTTTCCCTTCCCCAGCCCTGCCAACCTGGTGGGACATTGGGCTTCCCTCTTCCTGGGGACAGGCGGGTCCTGGGGACAAGCCTGTCCTGTATCATACCTGCAGCGAGACTCTTTTTTTCTCCAGGACCTGCGGAGCAGCCAGGCTTCATGAGTTAAATGCAGATCTGAACCATACCCAGTTGGGATTGGGGTACACACTCTACTCCTCTGAAAACTAGCTAGGGGTTCGAACTTGGTGAGAGGGAGAGTGGGACAGAGCCAGACCAGACAAGGACTGATCACCTGGAAAAACCTGCCATCAAAGACCTTGACGAGTgctgggggcggtggctcatgcctgtaatcccaacactttgggaggctgagacaggtggatcacttgaggccaggagttcgagtcccgcctgggcaacatggcaaaaccctgtctctactaaaaatacaaaaattagctaggtatgctatgctcctgtaatcccagctactcgggaggttgaggcaggagaatcgtttgaactggggaggtagaggttgcagtgagctgagattgtgtcactgccctccagcctgggtgacagagtgagactccgtctcaaaaaaaaaaaaaaaaCCCACCTGAAGAAGGTTTCCAGTTCTGCCAGCAGTCCCCCATCCAACCCCCAGAAGCAGACATTCCTTTGCTGTGGGCCATGGACAGGCAGAAGGAAGCGCCTCCTCATGGCAGAGGCCTACCCAGGAGAAACCCAAGGGAAGGCACTGCCTGGCCAGCCCCTCTGCCAAAGCCATTTTCttttttcctttttttttttttttttttttgagacacagtttcactctgtctcccagactggagtgcagtggcatgatcttggctcacttcaaccttcaccccctcccccgccccctgccgggttcaagtgattcccatgtttcagcttcctgagtagctgagattgcaggcatgcgccaccacacctgtctaatttttgtagagacggggtttcaccatgttggccaggctggtctggaactcctgacttgaa</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG047841]]
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[[Category:Intergenic]][[Category:NONHSAG047841]][[Category:Transcripts]]

Latest revision as of 06:36, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT121189

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2146 nt

Genomic location

chr7-:65956408..65958553

Exon number

1

Exons

65956408..65958553

Genome context

Sequence
000001 CGGCGACGTC ACAGTGGCGC TACAGTGCCT GGAGCTGCGC TGGTTTTTCC TCGGAGTGGA GCCTGGTAAC CGCGACTTCC 000080
000081 CCGCCATGTT CTGTGTGTTG CTGGCTGGAG AAGGGTGGTT GACAAACTCC GACCCAGCAC AGTGTTTCTG TGGGTCAAAA 000160
000161 CTAGAAAACT ATGTCCAGGC TCggccgagg cggaaggatc cgttcaggcc aggagttaaa gagctgcctg ggcaacatgg 000240
000241 cgcgacccca tctctGTAGT CCCACCTCAG CTTCCCAGAT Acttgaaccc caaggttcaa ggctgcaatg agctatgatc 000320
000321 ccatcacagc actccatcct gcgagacgga ggtaaacctt gtctaaaaaa ataaaCTATC CAAGTGTACA ACAGGGAGGG 000400
000401 ACTGCTTAAA GAAAACATGA TAATTGTATG TTCAAATACT TTTAACAAGT GCAAAATGTA TAGGCTGAAA TAAATAGGGC 000480
000481 Tggccgggca cgttggctca cgcctgtaaa ttccaacatt ttgtgtgctc gaggcattcc gatcagtaga catgggtgaa 000560
000561 accccatgtc tactaaaaat ataaaaatta ggccaggAAC TTTGCATCGT TTTAGGGGGC TCGCATCTCC CTAAGGGCCC 000640
000641 GGTAATTGAA CCCCTTGGAC CTGAGGGTGA GAAACCTTGG CTCAGTTCTT CCCAGGGTGA TCAGCCCAGG GGTAAGCGAG 000720
000721 GAGAGACCAG AAAACAGGAC CCATGAGAAG GTCCCCCTCC TGGAGTTTGA GGCCCATTCC TTCTTGTCCC TGCGTCTCCT 000800
000801 CTTTCCAGGA CTCCTCCCTG CTCTGCCCCA CTCCTGGGAG TGGGGTCATG GCCATGGGGG GCTGCTTTTG GGTACAGGCC 000880
000881 CCAGCGGCAA CCCTGGGCCC AAAGTGGGCA GGCTCACCTG GAGGGGATCA GAGTCACATG GCAAGACGCA AGGGGAAAAG 000960
000961 CCGCGCTGGA ACCGCACCTC TCTGCCCCCT GATGTCAGTG GGTGCACTCT TCCCTCACCT CACTCAGGCA GCGGCTTGAG 001040
001041 TTCCATGGGA GCACTGTCCT GCTCCCTCTG CTGCCTCTTT TTAGTCTTGG GGCTACTATA ACACTTTCCC TTCCCCAGCC 001120
001121 CTGCCAACCT GGTGGGACAT TGGGCTTCCC TCTTCCTGGG GACAGGCGGG TCCTGGGGAC AAGCCTGTCC TGTATCATAC 001200
001201 CTGCAGCGAG ACTCTTTTTT TCTCCAGGAC CTGCGGAGCA GCCAGGCTTC ATGAGTTAAA TGCAGATCTG AACCATACCC 001280
001281 AGTTGGGATT GGGGTACACA CTCTACTCCT CTGAAAACTA GCTAGGGGTT CGAACTTGGT GAGAGGGAGA GTGGGACAGA 001360
001361 GCCAGACCAG ACAAGGACTG ATCACCTGGA AAAACCTGCC ATCAAAGACC TTGACGAGTg ctgggggcgg tggctcatgc 001440
001441 ctgtaatccc aacactttgg gaggctgaga caggtggatc acttgaggcc aggagttcga gtcccgcctg ggcaacatgg 001520
001521 caaaaccctg tctctactaa aaatacaaaa attagctagg tatgctatgc tcctgtaatc ccagctactc gggaggttga 001600
001601 ggcaggagaa tcgtttgaac tggggaggta gaggttgcag tgagctgaga ttgtgtcact gccctccagc ctgggtgaca 001680
001681 gagtgagact ccgtctcaaa aaaaaaaaaa aaaCCCACCT GAAGAAGGTT TCCAGTTCTG CCAGCAGTCC CCCATCCAAC 001760
001761 CCCCAGAAGC AGACATTCCT TTGCTGTGGG CCATGGACAG GCAGAAGGAA GCGCCTCCTC ATGGCAGAGG CCTACCCAGG 001840
001841 AGAAACCCAA GGGAAGGCAC TGCCTGGCCA GCCCCTCTGC CAAAGCCATT TTCttttttc cttttttttt tttttttttt 001920
001921 ttgagacaca gtttcactct gtctcccaga ctggagtgca gtggcatgat cttggctcac ttcaaccttc accccctccc 002000
002001 ccgccccctg ccgggttcaa gtgattccca tgtttcagct tcctgagtag ctgagattgc aggcatgcgc caccacacct 002080
002081 gtctaatttt tgtagagacg gggtttcacc atgttggcca ggctggtctg gaactcctga cttgaa
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Predicted Small Protein

Name NONHSAT121189_smProtein_1820:2023
Length 68
Molecular weight 7475.3423
Aromaticity 0.194029850746
Instability index 54.7194029851
Isoelectric point 5.75152587891
Runs 6
Runs residual 0.0537626006095
Runs probability 0.0577342047931
Amino acid sequence MAEAYPGETQGKALPGQPLCQSHFLFSFFFFFFFETQFHSVSQTGVQWHDLGSLQPSPPP
PPPAGFK
Secondary structure LLLLLLLLLLLLLLLLLLLLHHHHHHHEEEEEEEEEEEEEELLLLEEEEELLLLLLLLLL
LLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
LLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooo
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