Difference between revisions of "NONHSAT122516"
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sequence = <dnaseq>AGGGCTCTGGTGGCGGCGGTGGCGGACACTTGGGGTCTGGACGCAACGGCGGCGGGAGCATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAAGATCACCATTAACAAGGACACCAAGGTACCCAATGCCTGTTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATCGTAAGTTTCCCGTCACAGGCTCTCAGGGGCTATGTTTAATGGGCCCCTCTGGGCAAAGCACAAGTTCCAAGTCTTCCTCAGTCTCTCTGAGCTACAGGAAGTCCTTCTGGGGGCTTGCTCTGGGCATTTTATAATCTTGGTACCTTTTTATCAAAATGACACCGACCTCCATGTCTTCACATAAGCCACACTTCTGTAGTGGCTTATTCTGTAGATGAACACGTGCATTTACATTCACtgtttgtttgtttgtttgtttttgagatggaattttctctctttgttgcccaggctggagtgcaatggcacgatcttgctcactgcaacctccgcctcccgggttcaagtgattctcctgcttcagccttcctagtagctgggactacaggcccacgccacgatgcccggctaatttttgtgtttttagtagagacggggattcactgtgttggccaggctggtctcgaactcctgacctcaggtgatccacctgctggcttcccaaagtgctgggattagagacgtgagct</dnaseq>| | sequence = <dnaseq>AGGGCTCTGGTGGCGGCGGTGGCGGACACTTGGGGTCTGGACGCAACGGCGGCGGGAGCATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAAGATCACCATTAACAAGGACACCAAGGTACCCAATGCCTGTTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATCGTAAGTTTCCCGTCACAGGCTCTCAGGGGCTATGTTTAATGGGCCCCTCTGGGCAAAGCACAAGTTCCAAGTCTTCCTCAGTCTCTCTGAGCTACAGGAAGTCCTTCTGGGGGCTTGCTCTGGGCATTTTATAATCTTGGTACCTTTTTATCAAAATGACACCGACCTCCATGTCTTCACATAAGCCACACTTCTGTAGTGGCTTATTCTGTAGATGAACACGTGCATTTACATTCACtgtttgtttgtttgtttgtttttgagatggaattttctctctttgttgcccaggctggagtgcaatggcacgatcttgctcactgcaacctccgcctcccgggttcaagtgattctcctgcttcagccttcctagtagctgggactacaggcccacgccacgatgcccggctaatttttgtgtttttagtagagacggggattcactgtgttggccaggctggtctcgaactcctgacctcaggtgatccacctgctggcttcccaaagtgctgggattagagacgtgagct</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG048428]] | + | [[Category:Sense]][[Category:NONHSAG048428]][[Category:Transcripts]] |
Latest revision as of 06:42, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122516 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
729 nt |
Genomic location |
chr7-:102209752..102213027 |
Exon number |
2 |
Exons |
102209752..102210371,102212919..102213027 |
Genome context |
|
Sequence |
000001 AGGGCTCTGG TGGCGGCGGT GGCGGACACT TGGGGTCTGG ACGCAACGGC GGCGGGAGCA TGAACGCCCC TCCAGCCTTC 000080
000081 GAGTCGTTCT TGCTCTTCGA GGGCGAGAAG ATCACCATTA ACAAGGACAC CAAGGTACCC AATGCCTGTT TATTCACCAT 000160 000161 CAACAAAGAA GACCACACAC TGGGAAACAT CATTAAATCG TAAGTTTCCC GTCACAGGCT CTCAGGGGCT ATGTTTAATG 000240 000241 GGCCCCTCTG GGCAAAGCAC AAGTTCCAAG TCTTCCTCAG TCTCTCTGAG CTACAGGAAG TCCTTCTGGG GGCTTGCTCT 000320 000321 GGGCATTTTA TAATCTTGGT ACCTTTTTAT CAAAATGACA CCGACCTCCA TGTCTTCACA TAAGCCACAC TTCTGTAGTG 000400 000401 GCTTATTCTG TAGATGAACA CGTGCATTTA CATTCACtgt ttgtttgttt gtttgttttt gagatggaat tttctctctt 000480 000481 tgttgcccag gctggagtgc aatggcacga tcttgctcac tgcaacctcc gcctcccggg ttcaagtgat tctcctgctt 000560 000561 cagccttcct agtagctggg actacaggcc cacgccacga tgcccggcta atttttgtgt ttttagtaga gacggggatt 000640 000641 cactgtgttg gccaggctgg tctcgaactc ctgacctcag gtgatccacc tgctggcttc ccaaagtgct gggattagag 000720 000721 acgtgagct |
Predicted Small Protein
Name | NONHSAT122516_smProtein_413:571 |
Length | 53 |
Molecular weight | 5940.1409 |
Aromaticity | 0.0961538461538 |
Instability index | 61.6769230769 |
Isoelectric point | 8.52227783203 |
Runs | 8 |
Runs residual | 0.00347674923946 |
Runs probability | 0.0325362126833 |
Amino acid sequence | MNTCIYIHCLFVCLFLRWNFLSLLPRLECNGTILLTATSASRVQVILLLQPS |
Secondary structure | LLLEEEEHHHHHHHHHHHHHHHHLLLLLLLLEEEEEELLLLLLEEEEEELLL |
PRMN | LLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | ooooTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooo |