Difference between revisions of "NONHSAT124174"

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sequence = <dnaseq>GTGAAACTGCTATTGCCGGCGGCTCCTGTTTTACCGCGTCAGCATGCTGGTGCATTTATTTCGGGTCGGGATTCGGGGTGGCCCATTCCCAGGCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGCTGTCAGaaacacatggcgtaatgggaaaactggacagttacacaAGGCAGAAGGAGAGTAAGCGTCTCTATCTTTCTAATAGAAACAAGAACACAGTGGAAAACAAGACATAAAAACCTGGCAGTTGGAATGGGGTGGGAGAAGGCCTCATGTAGGCAAAAGGCACAGGCCTTCCTGAAAGCAGGGGAAGGATGAGATGAAGACTGCAATTAGAAGGGTCTAGGGATGTGAAAGGCCATGATGGTAAAGAGAAAAGCTCACACTACTCTTTTTTTAAACCTTTCCCCATCAGTAAGCTTATCTAGATCTTCTAGATCTCACCATCCTCTCCTGGCTGGATAACTTCTGCTCCCTACAACCAGTCCTGTCTGCCTCCAGCCCATGCCCCTCTG</dnaseq>|
 
sequence = <dnaseq>GTGAAACTGCTATTGCCGGCGGCTCCTGTTTTACCGCGTCAGCATGCTGGTGCATTTATTTCGGGTCGGGATTCGGGGTGGCCCATTCCCAGGCAGGCTGCTACCGCCCCTCCGCTTCCAGACATTCTCAGCTGTCAGaaacacatggcgtaatgggaaaactggacagttacacaAGGCAGAAGGAGAGTAAGCGTCTCTATCTTTCTAATAGAAACAAGAACACAGTGGAAAACAAGACATAAAAACCTGGCAGTTGGAATGGGGTGGGAGAAGGCCTCATGTAGGCAAAAGGCACAGGCCTTCCTGAAAGCAGGGGAAGGATGAGATGAAGACTGCAATTAGAAGGGTCTAGGGATGTGAAAGGCCATGATGGTAAAGAGAAAAGCTCACACTACTCTTTTTTTAAACCTTTCCCCATCAGTAAGCTTATCTAGATCTTCTAGATCTCACCATCCTCTCCTGGCTGGATAACTTCTGCTCCCTACAACCAGTCCTGTCTGCCTCCAGCCCATGCCCCTCTG</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG049151]]
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[[Category:Sense]][[Category:NONHSAG049151]][[Category:Transcripts]]

Latest revision as of 06:49, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT124174

Source

NONCODE4.0

Same with

,

Classification

sense

Length

524 nt

Genomic location

chr7+:150725560..150728713

Exon number

2

Exons

150725560..150725697,150728328..150728713

Genome context

Sequence
000001 GTGAAACTGC TATTGCCGGC GGCTCCTGTT TTACCGCGTC AGCATGCTGG TGCATTTATT TCGGGTCGGG ATTCGGGGTG 000080
000081 GCCCATTCCC AGGCAGGCTG CTACCGCCCC TCCGCTTCCA GACATTCTCA GCTGTCAGaa acacatggcg taatgggaaa 000160
000161 actggacagt tacacaAGGC AGAAGGAGAG TAAGCGTCTC TATCTTTCTA ATAGAAACAA GAACACAGTG GAAAACAAGA 000240
000241 CATAAAAACC TGGCAGTTGG AATGGGGTGG GAGAAGGCCT CATGTAGGCA AAAGGCACAG GCCTTCCTGA AAGCAGGGGA 000320
000321 AGGATGAGAT GAAGACTGCA ATTAGAAGGG TCTAGGGATG TGAAAGGCCA TGATGGTAAA GAGAAAAGCT CACACTACTC 000400
000401 TTTTTTTAAA CCTTTCCCCA TCAGTAAGCT TATCTAGATC TTCTAGATCT CACCATCCTC TCCTGGCTGG ATAACTTCTG 000480
000481 CTCCCTACAA CCAGTCCTGT CTGCCTCCAG CCCATGCCCC TCTG
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Predicted Small Protein

Name NONHSAT124174_smProtein_152:244
Length 31
Molecular weight 3603.03
Aromaticity 0.0666666666667
Instability index 48.3733333333
Isoelectric point 10.1154174805
Runs 6
Runs residual 0.00225225225225
Runs probability 0.041423776718
Amino acid sequence MGKLDSYTRQKESKRLYLSNRNKNTVENKT
Secondary structure LLLLLLLLLLHHHHEEEEELLLLLLEELLL
PRMN -
PiMo -