Difference between revisions of "NONHSAT125333"

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sequence = <dnaseq>tggtgaaaccctgtctctaaaattacaaacattttgtctctaaaaatacaaaaattagctgggcatgaaaaaagagaaaacataaatggctaattaacaaataaaattgtgtttcacctctaaaaataaaaataaaacataaaaagtcttcaccaaacagttggcatcttttgctcttcttccttctaccagaggagaacacagtaagaaggctgcaccagaggctgtggtcttgatcttggacttaacctccaaaactgagaaaataaatatctgttctttataaatcacccaatctcaggtactgttatagcagcacaaatggactaagacaGtgactcccaaatttatgtcactagctcagacctgtcccctgaatttagattcttatatgtagttgcttctcagcctcatctactttggatacctaataggcatcttaatatgtcatgtctaaaaaggaacttatgttttctccgtcccaatatacactgtccctttcccaaatcttccccatctcagtaaatggcaatcccatctttctagtttgcttaggccaaagaatcttacagtcaatttgatttttctctttcttaccacaaactcaatgcaccagcaaatcctattagctttacgttcaaaatatacgataccccgaatctgaccacttctcaccactttccacttctgctttcttccaggttactctcatctggattattgtagtcaccttgtcactggtatctctgctttctcctaacccccatctaatctccaaaaaatcagagcatgtcactcctggcccccaaatccccccagtgactccgccctccccaccctgctcagaattaaagtcaatgatcttttttttttttttttttgagatggattcttgtgctgtcacccaggctggagtgcagtaagtagtgtgatctcagctcactgcagcctccgcctcccagattcaagcgattctcctgccttagcctcctgagtagttgggattacaggtgcgcacaatgcctggctaatttttatattgttaatagagttggggtttcaccatgttggccaagctggtcttgaactcctgacctcaggtgatccacccaccttggcctcgcaaagtactgggattacaggcatgagccaccatgcccagcctaaagtcaattatctcaccacagaccacaaggctactttgatccaaccagcccatcttatatactaccactttcctgttttctcacagtgctccaatcacactggccttctttctggacttcaaacatgccaaatatactctccttgagggacatagcacttactgctacctttgtttggaatgttctttcccagatacccatgtggcacacccaaatgcttgagtggccccttattagtgaggccttcctatagcattatatataagatggatataaggtaggactcagaacatactccctatcctccttactctacttcacctgactccaaacactgtcaccacctgacgtagtacatattttattttttatttgtttagcatctgtctgcctctaactagaatgcaagctccatgaggacagagatttttgttttgtttaccgccatattgtcagcagctagagcaatgtctggcatgtagtagcactcaatgaatattaattgaataaatgaGCTACCTAAAAAATAACTGCATTGATATCATAACCCAAGTAGTGTCTGAAATAATGTAATGAATTACCAGAATGCAAATGAATTATTTTCCAGATGTCTTTAAGTTGGGTGTTGGAAAGTCAATATGCATTTTTCCTACAAAtataaagtaagtgctgttattatccccatcttatggataagacatctgaTATTTAGCTTATGCAACTATGCCTGTTTTCTGATTTTGAGGCATGTACCTCACCACTTATACTAAATTTCCAGGTCAGATCATAAAACCTTACGTAAGCCATAAAATTCAGATATAAAGTAGTCTAAAAAAAGGAAGGACCAGAATGGAAGATACCTATCTTACACACAAACAGCTGTATCTAGAGTATAGGCTTCTTAGCTTTCTAGATGTTTCACCCAGTTATAGCTGTTCTTTGATAGTGATACAGtgatagaggcaggaggcagagaaattctaggcagatgggaagatccctggcaaagcaccaccctaaagctgaaaagcttgaaaccactgcctaaagtgagaacttatattcccgttttcctgcttgaatgttgtcttttcctaaactacccatagcctgccccaccctatcttgtgcctataaagaccccagactcagccagcagaggggagaaacagctggacatcagagagaagcagccggacttcagagggacagcttgatgacataactttggagaagaatgcagccagagatgggtggactccagggaaagattacctgccgccccaccctcttttcagctccccttcctgctgagagccactttcatcggcaataaaatacactgcat</dnaseq>|
 
sequence = <dnaseq>tggtgaaaccctgtctctaaaattacaaacattttgtctctaaaaatacaaaaattagctgggcatgaaaaaagagaaaacataaatggctaattaacaaataaaattgtgtttcacctctaaaaataaaaataaaacataaaaagtcttcaccaaacagttggcatcttttgctcttcttccttctaccagaggagaacacagtaagaaggctgcaccagaggctgtggtcttgatcttggacttaacctccaaaactgagaaaataaatatctgttctttataaatcacccaatctcaggtactgttatagcagcacaaatggactaagacaGtgactcccaaatttatgtcactagctcagacctgtcccctgaatttagattcttatatgtagttgcttctcagcctcatctactttggatacctaataggcatcttaatatgtcatgtctaaaaaggaacttatgttttctccgtcccaatatacactgtccctttcccaaatcttccccatctcagtaaatggcaatcccatctttctagtttgcttaggccaaagaatcttacagtcaatttgatttttctctttcttaccacaaactcaatgcaccagcaaatcctattagctttacgttcaaaatatacgataccccgaatctgaccacttctcaccactttccacttctgctttcttccaggttactctcatctggattattgtagtcaccttgtcactggtatctctgctttctcctaacccccatctaatctccaaaaaatcagagcatgtcactcctggcccccaaatccccccagtgactccgccctccccaccctgctcagaattaaagtcaatgatcttttttttttttttttttgagatggattcttgtgctgtcacccaggctggagtgcagtaagtagtgtgatctcagctcactgcagcctccgcctcccagattcaagcgattctcctgccttagcctcctgagtagttgggattacaggtgcgcacaatgcctggctaatttttatattgttaatagagttggggtttcaccatgttggccaagctggtcttgaactcctgacctcaggtgatccacccaccttggcctcgcaaagtactgggattacaggcatgagccaccatgcccagcctaaagtcaattatctcaccacagaccacaaggctactttgatccaaccagcccatcttatatactaccactttcctgttttctcacagtgctccaatcacactggccttctttctggacttcaaacatgccaaatatactctccttgagggacatagcacttactgctacctttgtttggaatgttctttcccagatacccatgtggcacacccaaatgcttgagtggccccttattagtgaggccttcctatagcattatatataagatggatataaggtaggactcagaacatactccctatcctccttactctacttcacctgactccaaacactgtcaccacctgacgtagtacatattttattttttatttgtttagcatctgtctgcctctaactagaatgcaagctccatgaggacagagatttttgttttgtttaccgccatattgtcagcagctagagcaatgtctggcatgtagtagcactcaatgaatattaattgaataaatgaGCTACCTAAAAAATAACTGCATTGATATCATAACCCAAGTAGTGTCTGAAATAATGTAATGAATTACCAGAATGCAAATGAATTATTTTCCAGATGTCTTTAAGTTGGGTGTTGGAAAGTCAATATGCATTTTTCCTACAAAtataaagtaagtgctgttattatccccatcttatggataagacatctgaTATTTAGCTTATGCAACTATGCCTGTTTTCTGATTTTGAGGCATGTACCTCACCACTTATACTAAATTTCCAGGTCAGATCATAAAACCTTACGTAAGCCATAAAATTCAGATATAAAGTAGTCTAAAAAAAGGAAGGACCAGAATGGAAGATACCTATCTTACACACAAACAGCTGTATCTAGAGTATAGGCTTCTTAGCTTTCTAGATGTTTCACCCAGTTATAGCTGTTCTTTGATAGTGATACAGtgatagaggcaggaggcagagaaattctaggcagatgggaagatccctggcaaagcaccaccctaaagctgaaaagcttgaaaccactgcctaaagtgagaacttatattcccgttttcctgcttgaatgttgtcttttcctaaactacccatagcctgccccaccctatcttgtgcctataaagaccccagactcagccagcagaggggagaaacagctggacatcagagagaagcagccggacttcagagggacagcttgatgacataactttggagaagaatgcagccagagatgggtggactccagggaaagattacctgccgccccaccctcttttcagctccccttcctgctgagagccactttcatcggcaataaaatacactgcat</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG049656]]
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[[Category:Intergenic]][[Category:NONHSAG049656]][[Category:Transcripts]]

Latest revision as of 06:54, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT125333

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2514 nt

Genomic location

chr8+:17952180..17955147

Exon number

2

Exons

17952180..17952246,17952701..17955147

Genome context

Sequence
000001 tggtgaaacc ctgtctctaa aattacaaac attttgtctc taaaaataca aaaattagct gggcatgaaa aaagagaaaa 000080
000081 cataaatggc taattaacaa ataaaattgt gtttcacctc taaaaataaa aataaaacat aaaaagtctt caccaaacag 000160
000161 ttggcatctt ttgctcttct tccttctacc agaggagaac acagtaagaa ggctgcacca gaggctgtgg tcttgatctt 000240
000241 ggacttaacc tccaaaactg agaaaataaa tatctgttct ttataaatca cccaatctca ggtactgtta tagcagcaca 000320
000321 aatggactaa gacaGtgact cccaaattta tgtcactagc tcagacctgt cccctgaatt tagattctta tatgtagttg 000400
000401 cttctcagcc tcatctactt tggataccta ataggcatct taatatgtca tgtctaaaaa ggaacttatg ttttctccgt 000480
000481 cccaatatac actgtccctt tcccaaatct tccccatctc agtaaatggc aatcccatct ttctagtttg cttaggccaa 000560
000561 agaatcttac agtcaatttg atttttctct ttcttaccac aaactcaatg caccagcaaa tcctattagc tttacgttca 000640
000641 aaatatacga taccccgaat ctgaccactt ctcaccactt tccacttctg ctttcttcca ggttactctc atctggatta 000720
000721 ttgtagtcac cttgtcactg gtatctctgc tttctcctaa cccccatcta atctccaaaa aatcagagca tgtcactcct 000800
000801 ggcccccaaa tccccccagt gactccgccc tccccaccct gctcagaatt aaagtcaatg atcttttttt tttttttttt 000880
000881 tgagatggat tcttgtgctg tcacccaggc tggagtgcag taagtagtgt gatctcagct cactgcagcc tccgcctccc 000960
000961 agattcaagc gattctcctg ccttagcctc ctgagtagtt gggattacag gtgcgcacaa tgcctggcta atttttatat 001040
001041 tgttaataga gttggggttt caccatgttg gccaagctgg tcttgaactc ctgacctcag gtgatccacc caccttggcc 001120
001121 tcgcaaagta ctgggattac aggcatgagc caccatgccc agcctaaagt caattatctc accacagacc acaaggctac 001200
001201 tttgatccaa ccagcccatc ttatatacta ccactttcct gttttctcac agtgctccaa tcacactggc cttctttctg 001280
001281 gacttcaaac atgccaaata tactctcctt gagggacata gcacttactg ctacctttgt ttggaatgtt ctttcccaga 001360
001361 tacccatgtg gcacacccaa atgcttgagt ggccccttat tagtgaggcc ttcctatagc attatatata agatggatat 001440
001441 aaggtaggac tcagaacata ctccctatcc tccttactct acttcacctg actccaaaca ctgtcaccac ctgacgtagt 001520
001521 acatatttta ttttttattt gtttagcatc tgtctgcctc taactagaat gcaagctcca tgaggacaga gatttttgtt 001600
001601 ttgtttaccg ccatattgtc agcagctaga gcaatgtctg gcatgtagta gcactcaatg aatattaatt gaataaatga 001680
001681 GCTACCTAAA AAATAACTGC ATTGATATCA TAACCCAAGT AGTGTCTGAA ATAATGTAAT GAATTACCAG AATGCAAATG 001760
001761 AATTATTTTC CAGATGTCTT TAAGTTGGGT GTTGGAAAGT CAATATGCAT TTTTCCTACA AAtataaagt aagtgctgtt 001840
001841 attatcccca tcttatggat aagacatctg aTATTTAGCT TATGCAACTA TGCCTGTTTT CTGATTTTGA GGCATGTACC 001920
001921 TCACCACTTA TACTAAATTT CCAGGTCAGA TCATAAAACC TTACGTAAGC CATAAAATTC AGATATAAAG TAGTCTAAAA 002000
002001 AAAGGAAGGA CCAGAATGGA AGATACCTAT CTTACACACA AACAGCTGTA TCTAGAGTAT AGGCTTCTTA GCTTTCTAGA 002080
002081 TGTTTCACCC AGTTATAGCT GTTCTTTGAT AGTGATACAG tgatagaggc aggaggcaga gaaattctag gcagatggga 002160
002161 agatccctgg caaagcacca ccctaaagct gaaaagcttg aaaccactgc ctaaagtgag aacttatatt cccgttttcc 002240
002241 tgcttgaatg ttgtcttttc ctaaactacc catagcctgc cccaccctat cttgtgccta taaagacccc agactcagcc 002320
002321 agcagagggg agaaacagct ggacatcaga gagaagcagc cggacttcag agggacagct tgatgacata actttggaga 002400
002401 agaatgcagc cagagatggg tggactccag ggaaagatta cctgccgccc caccctcttt tcagctcccc ttcctgctga 002480
002481 gagccacttt catcggcaat aaaatacact gcat
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Predicted Small Protein

Name NONHSAT125333_smProtein_449:580
Length 44
Molecular weight 4829.6999
Aromaticity 0.093023255814
Instability index 65.011627907
Isoelectric point 9.18621826172
Runs 11
Runs residual 0.0985105827019
Runs probability 0.0357951534423
Amino acid sequence MSKKELMFSPSQYTLSLSQIFPISVNGNPIFLVCLGQRILQSI
Secondary structure LLLEEEEELLLLEEELLLLEEEEEELLLLEEEEELLHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooo