Difference between revisions of "NONHSAT126624"
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sequence = <dnaseq>TATTTCCGATATTTGCCTGATTTGATTTGACACCAGCCACCAAGTTTGATTTTTTTATGGATATCATTAGTAACAAGATATTCCCTAAATTGCTGTGGGCAAGCATGTGTGTTCCATTGACTTTCCCTGCTTGTCTTTTCAGGGAGGAGCTTTATCTTTATATACTGCCCTTACCACACAGCAGAAACTGGCAGGTGTCACTGCACTCAGTTGCTGGCTTCCACTTCGGGCTTCCTTTCCACAGGGTCCTATCGGTGGTGCTAATAGAGATATTTCTATTCTCCAGTGCCACGGGGATTGTGACCCTTTGGTTCCCCTGATGTTTGGTTCTCTTACGGTGGAAAAACTAAAAACATTGGTGAATCCAGCCAATGTGACCTTTAAAACCTATGAAGGTATGATGCACAGTTCGTGTCAACAGGAAATGATGGATGTCAAGCAATTCATTGATAAACTCCTACCTCCAATTGATTGACGTCACTAAGAGGCCTTGTGTAGAAGTACACCAGCATCATTGTAGTAGAGTGTAAACCTTTTCCCATGCCCAGTCTTCAAATTTCTAATGTTTTGCAGTGTT</dnaseq>| | sequence = <dnaseq>TATTTCCGATATTTGCCTGATTTGATTTGACACCAGCCACCAAGTTTGATTTTTTTATGGATATCATTAGTAACAAGATATTCCCTAAATTGCTGTGGGCAAGCATGTGTGTTCCATTGACTTTCCCTGCTTGTCTTTTCAGGGAGGAGCTTTATCTTTATATACTGCCCTTACCACACAGCAGAAACTGGCAGGTGTCACTGCACTCAGTTGCTGGCTTCCACTTCGGGCTTCCTTTCCACAGGGTCCTATCGGTGGTGCTAATAGAGATATTTCTATTCTCCAGTGCCACGGGGATTGTGACCCTTTGGTTCCCCTGATGTTTGGTTCTCTTACGGTGGAAAAACTAAAAACATTGGTGAATCCAGCCAATGTGACCTTTAAAACCTATGAAGGTATGATGCACAGTTCGTGTCAACAGGAAATGATGGATGTCAAGCAATTCATTGATAAACTCCTACCTCCAATTGATTGACGTCACTAAGAGGCCTTGTGTAGAAGTACACCAGCATCATTGTAGTAGAGTGTAAACCTTTTCCCATGCCCAGTCTTCAAATTTCTAATGTTTTGCAGTGTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG050244]] | + | [[Category:Sense]][[Category:NONHSAG050244]][[Category:Transcripts]] |
Latest revision as of 06:59, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT126624 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
577 nt |
| Genomic location |
chr8-:54960523..54965458 |
| Exon number |
3 |
| Exons |
54960523..54960678,54963572..54963748,54965215..54965458 |
| Genome context |
|
| Sequence |
000001 TATTTCCGAT ATTTGCCTGA TTTGATTTGA CACCAGCCAC CAAGTTTGAT TTTTTTATGG ATATCATTAG TAACAAGATA 000080
000081 TTCCCTAAAT TGCTGTGGGC AAGCATGTGT GTTCCATTGA CTTTCCCTGC TTGTCTTTTC AGGGAGGAGC TTTATCTTTA 000160 000161 TATACTGCCC TTACCACACA GCAGAAACTG GCAGGTGTCA CTGCACTCAG TTGCTGGCTT CCACTTCGGG CTTCCTTTCC 000240 000241 ACAGGGTCCT ATCGGTGGTG CTAATAGAGA TATTTCTATT CTCCAGTGCC ACGGGGATTG TGACCCTTTG GTTCCCCTGA 000320 000321 TGTTTGGTTC TCTTACGGTG GAAAAACTAA AAACATTGGT GAATCCAGCC AATGTGACCT TTAAAACCTA TGAAGGTATG 000400 000401 ATGCACAGTT CGTGTCAACA GGAAATGATG GATGTCAAGC AATTCATTGA TAAACTCCTA CCTCCAATTG ATTGACGTCA 000480 000481 CTAAGAGGCC TTGTGTAGAA GTACACCAGC ATCATTGTAG TAGAGTGTAA ACCTTTTCCC ATGCCCAGTC TTCAAATTTC 000560 000561 TAATGTTTTG CAGTGTT |
Predicted Small Protein
| Name | NONHSAT126624_smProtein_56:319 |
| Length | 88 |
| Molecular weight | 10033.8847 |
| Aromaticity | 0.16091954023 |
| Instability index | 54.0287356322 |
| Isoelectric point | 7.87469482422 |
| Runs | 16 |
| Runs residual | 0.0456486042693 |
| Runs probability | 0.080159203321 |
| Amino acid sequence | MDIISNKIFPKLLWASMCVPLTFPACLFREELYLYILPLPHSRNWQVSLHSVAGFHFGLP FHRVLSVVLIEIFLFSSATGIVTLWFP |
| Secondary structure | LLLLLLLLLHHHHHHHLLLLLLLLHHHHHHHHHHHLLLLLLLLLLEEEEEHHHHHLLLLL LEEEEEEELEEELEELLLLLEEEEELL |
| PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLHHH HHHHHHHHHHHHHHHHHHHHLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooooTTT TTTTTTTTTTTTTTTTTTTTiiiiiii |
