Difference between revisions of "NONHSAT131002"
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sequence = <dnaseq>ATGAGCAGCGAGGCCGAGACCCAGCAGCCGCCCGCCGCTCCCCCACGCCGCCCCCGCCCTCAGCGCCGCCGACACCCACCCCAGCACTGCAGGCAGCGGCGCAGGAAGCGGTGGCCCGGGCGGCCTCACATCGGCGGCGCCTGCCGGCGGGGACAAGAAGGTCATCGCAACGAAGGTTTTGGGAACAGTAAAATGGTTCAGTGTAAGGAACGGATATGGTTTCATCAACAGGAATGACACCAAGGAAGATGTATTTGTACACCAGACTGCCAGAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGGCCTGGTGGTGTTCCAGTTCAAGGCAGTACATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGTAGGGTCCTCCACGCAATTACCAGCAAAATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATCGGAGAGTGCTCCCGCAGGCCAAGCCCAACAACGCCGGCCCTACCGCAGGCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCAGGGTGAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGGCAGAATACGTATCGGGGATATAGACCACGATTCCGCAGGGGCCCTCCACGCCAAAGACAGCCTAGAGAGGACGGCAATGATGAAGATAAAGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATTGCCGACGCAGACACCCAGAAAACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCACTCCTGAGGCTGAGCGGGGCAGGACTGAGTAA</dnaseq>| | sequence = <dnaseq>ATGAGCAGCGAGGCCGAGACCCAGCAGCCGCCCGCCGCTCCCCCACGCCGCCCCCGCCCTCAGCGCCGCCGACACCCACCCCAGCACTGCAGGCAGCGGCGCAGGAAGCGGTGGCCCGGGCGGCCTCACATCGGCGGCGCCTGCCGGCGGGGACAAGAAGGTCATCGCAACGAAGGTTTTGGGAACAGTAAAATGGTTCAGTGTAAGGAACGGATATGGTTTCATCAACAGGAATGACACCAAGGAAGATGTATTTGTACACCAGACTGCCAGAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGGCCTGGTGGTGTTCCAGTTCAAGGCAGTACATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGTAGGGTCCTCCACGCAATTACCAGCAAAATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATCGGAGAGTGCTCCCGCAGGCCAAGCCCAACAACGCCGGCCCTACCGCAGGCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCAGGGTGAAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGGCAGAATACGTATCGGGGATATAGACCACGATTCCGCAGGGGCCCTCCACGCCAAAGACAGCCTAGAGAGGACGGCAATGATGAAGATAAAGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGCCGCAACTTCAATTGCCGACGCAGACACCCAGAAAACCCTAAACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCACTCCTGAGGCTGAGCGGGGCAGGACTGAGTAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG052138]] | + | [[Category:Intergenic]][[Category:NONHSAG052138]][[Category:Transcripts]] |
Latest revision as of 07:16, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT131002 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
975 nt |
| Genomic location |
chr9-:35971341..35972315 |
| Exon number |
1 |
| Exons |
35971341..35972315 |
| Genome context |
|
| Sequence |
000001 ATGAGCAGCG AGGCCGAGAC CCAGCAGCCG CCCGCCGCTC CCCCACGCCG CCCCCGCCCT CAGCGCCGCC GACACCCACC 000080
000081 CCAGCACTGC AGGCAGCGGC GCAGGAAGCG GTGGCCCGGG CGGCCTCACA TCGGCGGCGC CTGCCGGCGG GGACAAGAAG 000160 000161 GTCATCGCAA CGAAGGTTTT GGGAACAGTA AAATGGTTCA GTGTAAGGAA CGGATATGGT TTCATCAACA GGAATGACAC 000240 000241 CAAGGAAGAT GTATTTGTAC ACCAGACTGC CAGAAAGAAG AATAACCCCA GGAAGTACCT TCGCAGTGTA GGAGATGGAG 000320 000321 AGACTGTGGA GTTTGATGTT GTTGAAGGAG AAAAGGGTGC GGAGGCAGCA AATGTTACAG GGCCTGGTGG TGTTCCAGTT 000400 000401 CAAGGCAGTA CATATGCAGC AGACCGTAAC CATTATAGAC GCTATCCACG TCGTAGGGTC CTCCACGCAA TTACCAGCAA 000480 000481 AATTACCAGA ATAGTGAGAG TGGGGAAAAG AACGAGGGAT CGGAGAGTGC TCCCGCAGGC CAAGCCCAAC AACGCCGGCC 000560 000561 CTACCGCAGG CGAAGGTTCC CACCTTACTA CATGCGGAGA CCCTATGGGC GTCGACCACA GTATTCCAAC CCTCCTGTGC 000640 000641 AGGGTGAAGT GATGGAGGGT GCTGACAACC AGGGTGCAGG AGAACAAGGT AGACCAGTGA GGCAGAATAC GTATCGGGGA 000720 000721 TATAGACCAC GATTCCGCAG GGGCCCTCCA CGCCAAAGAC AGCCTAGAGA GGACGGCAAT GATGAAGATA AAGAAAATCA 000800 000801 AGGAGATGAG ACCCAAGGTC AGCAGCCACC TCAACGTCGG TACCGCCGCA ACTTCAATTG CCGACGCAGA CACCCAGAAA 000880 000881 ACCCTAAACC ACAAGATGGC AAAGAGACAA AAGCAGCCGA TCCACCAGCT GAGAATTCGT CCACTCCTGA GGCTGAGCGG 000960 000961 GGCAGGACTG AGTAA |
Predicted Small Protein
| Name | NONHSAT131002_smProtein_314:493 |
| Length | 60 |
| Molecular weight | 6859.1621 |
| Aromaticity | 0.0508474576271 |
| Instability index | 50.3542372881 |
| Isoelectric point | 10.4198608398 |
| Runs | 8 |
| Runs residual | 0.00886331830197 |
| Runs probability | 0.0282304363187 |
| Amino acid sequence | MERLWSLMLLKEKRVRRQQMLQGLVVFQFKAVHMQQTVTIIDAIHVVGSSTQLPAKLPE |
| Secondary structure | LLHHHHHHHHHHHHHHHHHHHHLLLLEEEEHHHHLLEEEEEEEEEEELLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
