Difference between revisions of "NONHSAT131185"

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sequence = <dnaseq>GAGTGCACCTGGCCTGAGAGCCCGCCAGGCCCTGCCCCTGCTCGGCTCCTCGTCTGCTGAAGCTCGGGACCTCTAGCCAGTGGCCCTCTGCAGCCACGGGGAATGGGGCTGAGAGCCGGTTCCCGCTGCAGGGCAGACCACCTAGCTCAGCCGCAGCCACAGGGACATCTGGCCCCGGTTCTGAGATGTGGGGAGTGCTGGCGGGCTCGGGGGTTGCCTGGAGGCTGCTGCCTGCACACAGAAGGCGGATGCAGCTTGGGTGCCCAGGCGGGCTGGAGGACAGCGGGCTGGGAAGCCAGGGGCCGCCGGGACCTGGGGCTGGAAACCACATCTGCCCACAGCCGCAGCCTCCTGCACCTGTCATCCTGGCGGCGCCCTGACGTCGGAGAAGCAGCAGGCGCGGAGCTCCTGCAGCGGGCACCGCTGCAGCAACCCGACCCGGCGCAGGCGGCAGTGGAAGGCGGCCTGCTAGCACGGCTCCCGCGGCCCCAGGACCAGGGGTGCGGCCAGCACCGCCCTCACTCCCCGCGTCTCGTGGATATTGCCCTCCCTGGAGGCGGCTGGACCTAAGCGAGGCTCGCAGCGATCGGCCCCGCGAAGACTCGCATGCAGGGCTCAGGATCCCGCATTCTGGCGCCGCGGCACCGCACCTTTCAGCAGCCCTGCTCCTCTTCTTGTTGGTAAACTTTTGTCACTCTGCCATGAAAAGCATCCAGGCGTCCTTGATTTCGACATTGCGTGCACGCTCAGCCGAGCTCATCAGACGGGCGGTTGTCCCCAGAGCCCGCGGGTAGCTTGTTCCCGGGCGGCGGCTCCTGCTGGATGCAGCTCCTTGTGGGCCTACCAGGCTTGGTGGAGCCACAGCAGACCTGTGGAGAGGAAGAGTAAGGCGGGCTCTGCAGGGCAGTGGGCCGGGACCATGAGAGAGGCGGGTCAGTCTGGGCTCCAAGCTCAGCCTCTCGGATTCCCCGGGACCCACGGCTTATAATGCGCTTAAATCCCACGCCTCGCCCGAGAGACAGCACGTCACCGTCACCGTCACCGCCTAGCGCCCCTGACCCGCTCCCACTCCGCTGCAGCGGAGGGTGTGTGAGGGAGAGGGACGCAGGGAGGGAAAAGCGTTGGGAGGGCAAACATCTTTTCATAAGCTTTTCCCCTTCTATATGCCATCTCTGATGGGAGCCTCTTTAGATCTTTCGTCCATTTACTAATTGGGTTGTTCGATTTCTTATTGTTGAGTTGTAAGTGGTTTTTAATGGTCTGGATGCCAGACAGGTGTTTTGCAAATATTTTCTCCGTCTGTGGCTTGTTTCTCCATTCTCTTATTTCCTTTCCCAGAGCAAAAGTTTTTAATTGTAACGACTTCATACCAATATCTTCTTTCATGGTAGAAATTTGTCTTTTATGTACTTTACTGTTGTATCTACAAAGTAATTGCCAAACCCAAAGTTACCTAAATATCCCTTTTGTTATTTTACAGAAGTTTTACAGCTTTTGGATTTAAATTTAGGTCTAAAAATTGAATTCATAAAAGTAGAGAGTATAATGATGCTTACCAGAGGCTGTGTTGCTGGGGAGAAAAATGGGAAGTTGTTCACAGATGCAAAGATTCAGTTAAACCGGAGAAATGCGTTTTGAAATCTATTGCACAGCAGGATGACTATAGTCAATAATAATGTACTGTATATTTAAATAACAAAAAGTAAATTTCAAATATCTAACCACAA</dnaseq>|
 
sequence = <dnaseq>GAGTGCACCTGGCCTGAGAGCCCGCCAGGCCCTGCCCCTGCTCGGCTCCTCGTCTGCTGAAGCTCGGGACCTCTAGCCAGTGGCCCTCTGCAGCCACGGGGAATGGGGCTGAGAGCCGGTTCCCGCTGCAGGGCAGACCACCTAGCTCAGCCGCAGCCACAGGGACATCTGGCCCCGGTTCTGAGATGTGGGGAGTGCTGGCGGGCTCGGGGGTTGCCTGGAGGCTGCTGCCTGCACACAGAAGGCGGATGCAGCTTGGGTGCCCAGGCGGGCTGGAGGACAGCGGGCTGGGAAGCCAGGGGCCGCCGGGACCTGGGGCTGGAAACCACATCTGCCCACAGCCGCAGCCTCCTGCACCTGTCATCCTGGCGGCGCCCTGACGTCGGAGAAGCAGCAGGCGCGGAGCTCCTGCAGCGGGCACCGCTGCAGCAACCCGACCCGGCGCAGGCGGCAGTGGAAGGCGGCCTGCTAGCACGGCTCCCGCGGCCCCAGGACCAGGGGTGCGGCCAGCACCGCCCTCACTCCCCGCGTCTCGTGGATATTGCCCTCCCTGGAGGCGGCTGGACCTAAGCGAGGCTCGCAGCGATCGGCCCCGCGAAGACTCGCATGCAGGGCTCAGGATCCCGCATTCTGGCGCCGCGGCACCGCACCTTTCAGCAGCCCTGCTCCTCTTCTTGTTGGTAAACTTTTGTCACTCTGCCATGAAAAGCATCCAGGCGTCCTTGATTTCGACATTGCGTGCACGCTCAGCCGAGCTCATCAGACGGGCGGTTGTCCCCAGAGCCCGCGGGTAGCTTGTTCCCGGGCGGCGGCTCCTGCTGGATGCAGCTCCTTGTGGGCCTACCAGGCTTGGTGGAGCCACAGCAGACCTGTGGAGAGGAAGAGTAAGGCGGGCTCTGCAGGGCAGTGGGCCGGGACCATGAGAGAGGCGGGTCAGTCTGGGCTCCAAGCTCAGCCTCTCGGATTCCCCGGGACCCACGGCTTATAATGCGCTTAAATCCCACGCCTCGCCCGAGAGACAGCACGTCACCGTCACCGTCACCGCCTAGCGCCCCTGACCCGCTCCCACTCCGCTGCAGCGGAGGGTGTGTGAGGGAGAGGGACGCAGGGAGGGAAAAGCGTTGGGAGGGCAAACATCTTTTCATAAGCTTTTCCCCTTCTATATGCCATCTCTGATGGGAGCCTCTTTAGATCTTTCGTCCATTTACTAATTGGGTTGTTCGATTTCTTATTGTTGAGTTGTAAGTGGTTTTTAATGGTCTGGATGCCAGACAGGTGTTTTGCAAATATTTTCTCCGTCTGTGGCTTGTTTCTCCATTCTCTTATTTCCTTTCCCAGAGCAAAAGTTTTTAATTGTAACGACTTCATACCAATATCTTCTTTCATGGTAGAAATTTGTCTTTTATGTACTTTACTGTTGTATCTACAAAGTAATTGCCAAACCCAAAGTTACCTAAATATCCCTTTTGTTATTTTACAGAAGTTTTACAGCTTTTGGATTTAAATTTAGGTCTAAAAATTGAATTCATAAAAGTAGAGAGTATAATGATGCTTACCAGAGGCTGTGTTGCTGGGGAGAAAAATGGGAAGTTGTTCACAGATGCAAAGATTCAGTTAAACCGGAGAAATGCGTTTTGAAATCTATTGCACAGCAGGATGACTATAGTCAATAATAATGTACTGTATATTTAAATAACAAAAAGTAAATTTCAAATATCTAACCACAA</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG052204]]
+
[[Category:Intergenic]][[Category:NONHSAG052204]][[Category:Transcripts]]

Latest revision as of 07:16, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT131185

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1727 nt

Genomic location

chr9+:38621085..38624987

Exon number

2

Exons

38621085..38621362,38621829..38624987

Genome context

Sequence
000001 GAGTGCACCT GGCCTGAGAG CCCGCCAGGC CCTGCCCCTG CTCGGCTCCT CGTCTGCTGA AGCTCGGGAC CTCTAGCCAG 000080
000081 TGGCCCTCTG CAGCCACGGG GAATGGGGCT GAGAGCCGGT TCCCGCTGCA GGGCAGACCA CCTAGCTCAG CCGCAGCCAC 000160
000161 AGGGACATCT GGCCCCGGTT CTGAGATGTG GGGAGTGCTG GCGGGCTCGG GGGTTGCCTG GAGGCTGCTG CCTGCACACA 000240
000241 GAAGGCGGAT GCAGCTTGGG TGCCCAGGCG GGCTGGAGGA CAGCGGGCTG GGAAGCCAGG GGCCGCCGGG ACCTGGGGCT 000320
000321 GGAAACCACA TCTGCCCACA GCCGCAGCCT CCTGCACCTG TCATCCTGGC GGCGCCCTGA CGTCGGAGAA GCAGCAGGCG 000400
000401 CGGAGCTCCT GCAGCGGGCA CCGCTGCAGC AACCCGACCC GGCGCAGGCG GCAGTGGAAG GCGGCCTGCT AGCACGGCTC 000480
000481 CCGCGGCCCC AGGACCAGGG GTGCGGCCAG CACCGCCCTC ACTCCCCGCG TCTCGTGGAT ATTGCCCTCC CTGGAGGCGG 000560
000561 CTGGACCTAA GCGAGGCTCG CAGCGATCGG CCCCGCGAAG ACTCGCATGC AGGGCTCAGG ATCCCGCATT CTGGCGCCGC 000640
000641 GGCACCGCAC CTTTCAGCAG CCCTGCTCCT CTTCTTGTTG GTAAACTTTT GTCACTCTGC CATGAAAAGC ATCCAGGCGT 000720
000721 CCTTGATTTC GACATTGCGT GCACGCTCAG CCGAGCTCAT CAGACGGGCG GTTGTCCCCA GAGCCCGCGG GTAGCTTGTT 000800
000801 CCCGGGCGGC GGCTCCTGCT GGATGCAGCT CCTTGTGGGC CTACCAGGCT TGGTGGAGCC ACAGCAGACC TGTGGAGAGG 000880
000881 AAGAGTAAGG CGGGCTCTGC AGGGCAGTGG GCCGGGACCA TGAGAGAGGC GGGTCAGTCT GGGCTCCAAG CTCAGCCTCT 000960
000961 CGGATTCCCC GGGACCCACG GCTTATAATG CGCTTAAATC CCACGCCTCG CCCGAGAGAC AGCACGTCAC CGTCACCGTC 001040
001041 ACCGCCTAGC GCCCCTGACC CGCTCCCACT CCGCTGCAGC GGAGGGTGTG TGAGGGAGAG GGACGCAGGG AGGGAAAAGC 001120
001121 GTTGGGAGGG CAAACATCTT TTCATAAGCT TTTCCCCTTC TATATGCCAT CTCTGATGGG AGCCTCTTTA GATCTTTCGT 001200
001201 CCATTTACTA ATTGGGTTGT TCGATTTCTT ATTGTTGAGT TGTAAGTGGT TTTTAATGGT CTGGATGCCA GACAGGTGTT 001280
001281 TTGCAAATAT TTTCTCCGTC TGTGGCTTGT TTCTCCATTC TCTTATTTCC TTTCCCAGAG CAAAAGTTTT TAATTGTAAC 001360
001361 GACTTCATAC CAATATCTTC TTTCATGGTA GAAATTTGTC TTTTATGTAC TTTACTGTTG TATCTACAAA GTAATTGCCA 001440
001441 AACCCAAAGT TACCTAAATA TCCCTTTTGT TATTTTACAG AAGTTTTACA GCTTTTGGAT TTAAATTTAG GTCTAAAAAT 001520
001521 TGAATTCATA AAAGTAGAGA GTATAATGAT GCTTACCAGA GGCTGTGTTG CTGGGGAGAA AAATGGGAAG TTGTTCACAG 001600
001601 ATGCAAAGAT TCAGTTAAAC CGGAGAAATG CGTTTTGAAA TCTATTGCAC AGCAGGATGA CTATAGTCAA TAATAATGTA 001680
001681 CTGTATATTT AAATAACAAA AAGTAAATTT CAAATATCTA ACCACAA
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Predicted Small Protein

Name NONHSAT131185_smProtein_185:379
Length 65
Molecular weight 6456.4265
Aromaticity 0.03125
Instability index 83.928125
Isoelectric point 9.00665283203
Runs 9
Runs residual 0.00796875
Runs probability 0.0270073995564
Amino acid sequence MWGVLAGSGVAWRLLPAHRRRMQLGCPGGLEDSGLGSQGPPGPGAGNHICPQPQPPAPVI
LAAP
Secondary structure LEEEELLLLHHHHLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEE
EELL
PRMN -
PiMo -