Difference between revisions of "NONHSAT131268"
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sequence = <dnaseq>CCGCCAGCGGCTCCGACTCCATCGCGTCCTCTTCCAGTCTAGTGCTTTTTTCCAGATCTCGATCCCAAACTCCCTCCTGCCAGAATCTGGACCCGAATCCACCCATTGCCCGTTTTCCGCTGCCGCTGGAGAGAATCTCTGAGGTCCCCAGGAGAGCCTGCCTGCACGGAAGAGACGCCTCCTCGGGAAATTTGTGCACAGAGATAACACAGGGGATATGCCATATGAAGATGAAGGCAGAATTCTACAAGCCCAGGGATGCCAAAGATTGCCAGCAAACCACCAGAAGCTAGGAGAGAAGTGTGGATTAGATTCTTCCTCACAGCCCTCAGAAGGATCCAGCCCTGCCAAGAACTTGATCTCAGACTTCTAGTCTCCAGAACTGTGAGACAGTGCATTTTGTTTTGTAAGTCAGCCATATGGTTTGTGGCACTTTTTTATGGCAGCCCTAGGAGATGAAGACAATATGCAACATGGTATGTCCATTATAGGACACTGTGGGCCATAAATGTGTTCTTTGGCCTGAAGAAATAAAACTTGGTGGTCC</dnaseq>| | sequence = <dnaseq>CCGCCAGCGGCTCCGACTCCATCGCGTCCTCTTCCAGTCTAGTGCTTTTTTCCAGATCTCGATCCCAAACTCCCTCCTGCCAGAATCTGGACCCGAATCCACCCATTGCCCGTTTTCCGCTGCCGCTGGAGAGAATCTCTGAGGTCCCCAGGAGAGCCTGCCTGCACGGAAGAGACGCCTCCTCGGGAAATTTGTGCACAGAGATAACACAGGGGATATGCCATATGAAGATGAAGGCAGAATTCTACAAGCCCAGGGATGCCAAAGATTGCCAGCAAACCACCAGAAGCTAGGAGAGAAGTGTGGATTAGATTCTTCCTCACAGCCCTCAGAAGGATCCAGCCCTGCCAAGAACTTGATCTCAGACTTCTAGTCTCCAGAACTGTGAGACAGTGCATTTTGTTTTGTAAGTCAGCCATATGGTTTGTGGCACTTTTTTATGGCAGCCCTAGGAGATGAAGACAATATGCAACATGGTATGTCCATTATAGGACACTGTGGGCCATAAATGTGTTCTTTGGCCTGAAGAAATAAAACTTGGTGGTCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG052261]] | + | [[Category:Intergenic]][[Category:NONHSAG052261]][[Category:Transcripts]] |
Latest revision as of 07:17, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT131268 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
547 nt |
| Genomic location |
chr9-:41948523..41954710 |
| Exon number |
2 |
| Exons |
41948523..41948877,41954504..41954710 |
| Genome context |
|
| Sequence |
000001 CCGCCAGCGG CTCCGACTCC ATCGCGTCCT CTTCCAGTCT AGTGCTTTTT TCCAGATCTC GATCCCAAAC TCCCTCCTGC 000080
000081 CAGAATCTGG ACCCGAATCC ACCCATTGCC CGTTTTCCGC TGCCGCTGGA GAGAATCTCT GAGGTCCCCA GGAGAGCCTG 000160 000161 CCTGCACGGA AGAGACGCCT CCTCGGGAAA TTTGTGCACA GAGATAACAC AGGGGATATG CCATATGAAG ATGAAGGCAG 000240 000241 AATTCTACAA GCCCAGGGAT GCCAAAGATT GCCAGCAAAC CACCAGAAGC TAGGAGAGAA GTGTGGATTA GATTCTTCCT 000320 000321 CACAGCCCTC AGAAGGATCC AGCCCTGCCA AGAACTTGAT CTCAGACTTC TAGTCTCCAG AACTGTGAGA CAGTGCATTT 000400 000401 TGTTTTGTAA GTCAGCCATA TGGTTTGTGG CACTTTTTTA TGGCAGCCCT AGGAGATGAA GACAATATGC AACATGGTAT 000480 000481 GTCCATTATA GGACACTGTG GGCCATAAAT GTGTTCTTTG GCCTGAAGAA ATAAAACTTG GTGGTCC |
Predicted Small Protein
| Name | NONHSAT131268_smProtein_224:292 |
| Length | 23 |
| Molecular weight | 2663.0611 |
| Aromaticity | 0.0909090909091 |
| Instability index | 57.6277272727 |
| Isoelectric point | 9.51397705078 |
| Runs | 5 |
| Runs residual | 0.00909090909091 |
| Runs probability | 0.0477124183006 |
| Amino acid sequence | MKMKAEFYKPRDAKDCQQTTRS |
| Secondary structure | LLEELLLLLLLLHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
