Difference between revisions of "NONHSAT131729"

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sequence = <dnaseq>AAAGGAGCTGGCTCGCAGTCCCTGTCTCGCGGGGGGTGCCTCCCCCCACTGCGATGGGGGTCCTAAGAGCCGGGGGGGGAAGAGGGGCTGGCTCTCAGTCCCCGCCTCGCGGGAGGTGCCTCCCCCCACTGCGATGGGGGTCCCAAGAGCCAGGGAGGGAAGAGGGGCTGGCTCTCAGTCCCCGCCTCGCGGGAGGTGCCTCCGCCCCTTCCGATGGGGGTCCCAAGACCCAGGGAGGGGAGAGGGGCTGGCTCTCAGTCCCCTCCTCCCGGGGGTACCTCCTCCGCCTGCGATGGGGGTCCCAAGAGACAGGGGGGGAAGAGGGGCTGGCTCTCAGTCCACGCCTCGTGGGGGATGCCTCCCCCCCCTGCGATTGGGGTCCCAACAGCCAGCGGGGGAAGAGGGGCTGGTTCTCAGTCCCCGCCTCGCGGGGGATGCctccccgtgctgcgatgggggtcctaaaagccagggggtgaaaaggggctggctctcagtccccacctcgcgaggggtgcctctcccccctgcgataggtgtcctaatagccagggggggaagaggggctggctgtcagtccccacctcgcgaggggtgcctctcccccctgcgacaggtgtcctaatagccagggggggaagaggggctggctgtcagtccctgcctcgcgggtggtccttcaccccgctgcgatgggggtcctaagagcaagggggggaAGTGGGGCTGGCTCTCTGTCCCCGCCTCGCCGGGGGTGCCTCGCACCCTTGCGATGGGGGTCCTAAGAGCCAGTAGGGGAAGAGGAGCTGGCTCTCagtcacctcagcatggagggcctttctgttctggttttgcccaagagtaagcttatttgcatctggttctagcaagggaattgctgcgaaggccctcaaacaggggggccatcctttcgaatccctatctagttgtttagagatgtaggccaccggcctcagccaaggccccacagtttgggttaaaagtccagctgccatcttttctctctgacgcatacaatggaaaaggctttgtgagatcgggtagcccctcggctggggctttcagaagtttttcctttaagtcatgaaagacttgctgttgttggaatccccattccaaaagttcccggtccccgcccccattgtgacctcatacaaaggcttggctaatactgcaaagtttgggattcccagtctacaaaaccccacagctcctaggaattctctcaccacccttgtgcctttaggcttcggtagattgcaaatgacctgctttctttcggatcccgggctgctttcggacacctgtcgaatagtaaatcccaagtaaggtacctgcggtcgtcggcagatctgaattttcttcttggacacctaatacccacagccctccagagaccgagaggttgatgtcactcccaatatcggaggaagtatacacccccgtgtgagatggtccttaataatattccacggcggagggggtgatatgactacatacatggcagaaagtggaaacctcccagggatattgttcccacgatcctggagggaagaagatgatgttactttcaatatgacagaaggtggatgaagtggtggactgcccctccacacctgtggacacgcccccactgatattccttctaattgcagcgtgggagaggaggatatgacacgcgatatcgcagggagtagaaacacccctgtgatactgttcttaatattcagggaggaagaggatgatattactcccaatacagacgggtgtacaccctctgtacaccgagggtgtacacctgtctgtgaaagagttcttaatctccagagggggagatgatattactcacaatatggtaaagaggctgtgagtccacggaggatcctcagagccagcgggggaagaggggctggctctcagtccccgcctcgcgggggtgactccccccagtgcgatgggggtcctaagagccagtgggggaagaggggctggctctgagaccccgcctcgcggggggtgcctccccgccctgtgatgggggtcccaagagccagaaggcttagaggggctggctctcagtccccgcctcgcggggggtgcctcctcccccTGCGATGGGGGTCGTAAGAGCCACTGGGGGAATAGGGGCTTGCTCTCAGTCACCGCCTCGCGGGGGGTGCCTCctttcctttctacatagacacagtgacagtctgatctctctttcttttccctacaGATGGacacgcccccactgatattgtttttaatgcagcgtgggaggggaggatatgacacgcgatatcgcaggtagtagaaacacccctttgatagtgttcttaatattcagggaggaagaagatgatgttactcccaatacagacggatgtacaccctctgtacaccgagggtgtacacccgtctgtgaaggagttcgtaatctccagaggtggagatgatattactcacaatatggtaaacaggctgcgagtccatcgcggatcctcagagccaggtggggaagaggggctggctgtcagtcccctcctcgcggggggtgcctcccccactgctatggggatcccaagagccagtgggggaagaggTGCTGGCTCTCAGTCTCCGCCTCGCGAGGTGCCTCCCCACCCTGCGATCGGGGTCCGAAGAGCCAGGGGGGAAGAGGGGCTGGCTCtcttcgtggatgattctttttccattctcaggcagttttcttttttctttctttcttttttttttttttgagactgagtcttgctctgttgcccatgctttgctcgatctcgggtgactgcaaccactgcctcccaggttcaagagattctcctgcctcagcctcctgagtagctgggactagaggcgtgtgtcaccacacccagctaatttttgtatttttagtagagatggggtttcaccatgtttgccaggatggtctttatctcctgcccttgtgatccacccacctcagcctcccaaagtgctgggattgcaggtgcgagccaccgggtccagcctctcaggcgattttcatacctgcatactctgatcactactctgttaaacagtcaaggagggtaagtattatcttcagatttccagagctctgtctctgtacagccctctcctcctcaatattctgccctatgaattctagccacattggccttcccaggctcacagttctgtcttctcaactcaggaagatctctgagttccatctgcattctttcttcctgtgctgtggcctggaaagttttctaaggtgttagggaggtcaattgtggggctagcctcatttgtttctcatctcttgaggatcactgccctttgatgcttgattccagtgattgattccctttgttgcttgagggccatagtttcatatattttgtccagtagttttgttgttttaggtcagaaagtaattttggtctctgttactctatcttggccagaagtgtaagAcctaagcatttacacatcaaaatactgcacacataattttagtttaagctactttttaaaaaatctccttcattttccatttagcattctatttagggtattacattggtttttttgaaattctgttattggcagtttctattgcctatcaatcccatttaaagatagtgcatagggtattctaaaatagctgttaagcaaagagaaaattgggcctgatagggtgagaatcacAGCTCTAATACCtagagtgaccttataatgtattgtccaaaggagatatttttgacagtgaaagagggtgttgttagtaattatatcaggaccatggcctaaaccaggactatcccaggaagcctgggacatatTTGTACCCCATCTCTATTTAATGCCTTTATACAATTCTTTACttaattctaccagcctttattgagcctgctttctttgtctagctgagtgccacgtgctgacgtcactaagatcaatacagcaaactctgaaagatggacagagagacaggagatggtcctttataatgcagtgtgatctgtgctgcaatagagatggaagagtgttctgattggctggaaaacaatgcacatgggaagctgtacagaaatgagtggggaaagttttggaagctagaagttcaaaacgaggtgttggcagcaccatgctctctctgaagatgctaggaagaatctgctccatgcctttccattcgctcctggggtttcctgcaagccctgacattccttggcttgtagatgcatcaccccagtttccgcccccatcatcacatggcctcctctctgtgtgtgcctctgcgttccctctattcttcttctaaggacaccgacaccagtcatagtggattaagggtccactcctaaccaattacatctgcaacaaccctatttccaaataaagtcacattctaagattcctagggagaacctg</dnaseq>|
 
sequence = <dnaseq>AAAGGAGCTGGCTCGCAGTCCCTGTCTCGCGGGGGGTGCCTCCCCCCACTGCGATGGGGGTCCTAAGAGCCGGGGGGGGAAGAGGGGCTGGCTCTCAGTCCCCGCCTCGCGGGAGGTGCCTCCCCCCACTGCGATGGGGGTCCCAAGAGCCAGGGAGGGAAGAGGGGCTGGCTCTCAGTCCCCGCCTCGCGGGAGGTGCCTCCGCCCCTTCCGATGGGGGTCCCAAGACCCAGGGAGGGGAGAGGGGCTGGCTCTCAGTCCCCTCCTCCCGGGGGTACCTCCTCCGCCTGCGATGGGGGTCCCAAGAGACAGGGGGGGAAGAGGGGCTGGCTCTCAGTCCACGCCTCGTGGGGGATGCCTCCCCCCCCTGCGATTGGGGTCCCAACAGCCAGCGGGGGAAGAGGGGCTGGTTCTCAGTCCCCGCCTCGCGGGGGATGCctccccgtgctgcgatgggggtcctaaaagccagggggtgaaaaggggctggctctcagtccccacctcgcgaggggtgcctctcccccctgcgataggtgtcctaatagccagggggggaagaggggctggctgtcagtccccacctcgcgaggggtgcctctcccccctgcgacaggtgtcctaatagccagggggggaagaggggctggctgtcagtccctgcctcgcgggtggtccttcaccccgctgcgatgggggtcctaagagcaagggggggaAGTGGGGCTGGCTCTCTGTCCCCGCCTCGCCGGGGGTGCCTCGCACCCTTGCGATGGGGGTCCTAAGAGCCAGTAGGGGAAGAGGAGCTGGCTCTCagtcacctcagcatggagggcctttctgttctggttttgcccaagagtaagcttatttgcatctggttctagcaagggaattgctgcgaaggccctcaaacaggggggccatcctttcgaatccctatctagttgtttagagatgtaggccaccggcctcagccaaggccccacagtttgggttaaaagtccagctgccatcttttctctctgacgcatacaatggaaaaggctttgtgagatcgggtagcccctcggctggggctttcagaagtttttcctttaagtcatgaaagacttgctgttgttggaatccccattccaaaagttcccggtccccgcccccattgtgacctcatacaaaggcttggctaatactgcaaagtttgggattcccagtctacaaaaccccacagctcctaggaattctctcaccacccttgtgcctttaggcttcggtagattgcaaatgacctgctttctttcggatcccgggctgctttcggacacctgtcgaatagtaaatcccaagtaaggtacctgcggtcgtcggcagatctgaattttcttcttggacacctaatacccacagccctccagagaccgagaggttgatgtcactcccaatatcggaggaagtatacacccccgtgtgagatggtccttaataatattccacggcggagggggtgatatgactacatacatggcagaaagtggaaacctcccagggatattgttcccacgatcctggagggaagaagatgatgttactttcaatatgacagaaggtggatgaagtggtggactgcccctccacacctgtggacacgcccccactgatattccttctaattgcagcgtgggagaggaggatatgacacgcgatatcgcagggagtagaaacacccctgtgatactgttcttaatattcagggaggaagaggatgatattactcccaatacagacgggtgtacaccctctgtacaccgagggtgtacacctgtctgtgaaagagttcttaatctccagagggggagatgatattactcacaatatggtaaagaggctgtgagtccacggaggatcctcagagccagcgggggaagaggggctggctctcagtccccgcctcgcgggggtgactccccccagtgcgatgggggtcctaagagccagtgggggaagaggggctggctctgagaccccgcctcgcggggggtgcctccccgccctgtgatgggggtcccaagagccagaaggcttagaggggctggctctcagtccccgcctcgcggggggtgcctcctcccccTGCGATGGGGGTCGTAAGAGCCACTGGGGGAATAGGGGCTTGCTCTCAGTCACCGCCTCGCGGGGGGTGCCTCctttcctttctacatagacacagtgacagtctgatctctctttcttttccctacaGATGGacacgcccccactgatattgtttttaatgcagcgtgggaggggaggatatgacacgcgatatcgcaggtagtagaaacacccctttgatagtgttcttaatattcagggaggaagaagatgatgttactcccaatacagacggatgtacaccctctgtacaccgagggtgtacacccgtctgtgaaggagttcgtaatctccagaggtggagatgatattactcacaatatggtaaacaggctgcgagtccatcgcggatcctcagagccaggtggggaagaggggctggctgtcagtcccctcctcgcggggggtgcctcccccactgctatggggatcccaagagccagtgggggaagaggTGCTGGCTCTCAGTCTCCGCCTCGCGAGGTGCCTCCCCACCCTGCGATCGGGGTCCGAAGAGCCAGGGGGGAAGAGGGGCTGGCTCtcttcgtggatgattctttttccattctcaggcagttttcttttttctttctttcttttttttttttttgagactgagtcttgctctgttgcccatgctttgctcgatctcgggtgactgcaaccactgcctcccaggttcaagagattctcctgcctcagcctcctgagtagctgggactagaggcgtgtgtcaccacacccagctaatttttgtatttttagtagagatggggtttcaccatgtttgccaggatggtctttatctcctgcccttgtgatccacccacctcagcctcccaaagtgctgggattgcaggtgcgagccaccgggtccagcctctcaggcgattttcatacctgcatactctgatcactactctgttaaacagtcaaggagggtaagtattatcttcagatttccagagctctgtctctgtacagccctctcctcctcaatattctgccctatgaattctagccacattggccttcccaggctcacagttctgtcttctcaactcaggaagatctctgagttccatctgcattctttcttcctgtgctgtggcctggaaagttttctaaggtgttagggaggtcaattgtggggctagcctcatttgtttctcatctcttgaggatcactgccctttgatgcttgattccagtgattgattccctttgttgcttgagggccatagtttcatatattttgtccagtagttttgttgttttaggtcagaaagtaattttggtctctgttactctatcttggccagaagtgtaagAcctaagcatttacacatcaaaatactgcacacataattttagtttaagctactttttaaaaaatctccttcattttccatttagcattctatttagggtattacattggtttttttgaaattctgttattggcagtttctattgcctatcaatcccatttaaagatagtgcatagggtattctaaaatagctgttaagcaaagagaaaattgggcctgatagggtgagaatcacAGCTCTAATACCtagagtgaccttataatgtattgtccaaaggagatatttttgacagtgaaagagggtgttgttagtaattatatcaggaccatggcctaaaccaggactatcccaggaagcctgggacatatTTGTACCCCATCTCTATTTAATGCCTTTATACAATTCTTTACttaattctaccagcctttattgagcctgctttctttgtctagctgagtgccacgtgctgacgtcactaagatcaatacagcaaactctgaaagatggacagagagacaggagatggtcctttataatgcagtgtgatctgtgctgcaatagagatggaagagtgttctgattggctggaaaacaatgcacatgggaagctgtacagaaatgagtggggaaagttttggaagctagaagttcaaaacgaggtgttggcagcaccatgctctctctgaagatgctaggaagaatctgctccatgcctttccattcgctcctggggtttcctgcaagccctgacattccttggcttgtagatgcatcaccccagtttccgcccccatcatcacatggcctcctctctgtgtgtgcctctgcgttccctctattcttcttctaaggacaccgacaccagtcatagtggattaagggtccactcctaaccaattacatctgcaacaaccctatttccaaataaagtcacattctaagattcctagggagaacctg</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG052491]]
+
[[Category:Intergenic]][[Category:NONHSAG052491]][[Category:Transcripts]]

Latest revision as of 07:19, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT131729

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4464 nt

Genomic location

chr9+:70937327..70945369

Exon number

5

Exons

70937327..70938741,70939950..70940173,70941179..70943606,70943805..70943873,70945042..70945369

Genome context

Sequence
000001 AAAGGAGCTG GCTCGCAGTC CCTGTCTCGC GGGGGGTGCC TCCCCCCACT GCGATGGGGG TCCTAAGAGC CGGGGGGGGA 000080
000081 AGAGGGGCTG GCTCTCAGTC CCCGCCTCGC GGGAGGTGCC TCCCCCCACT GCGATGGGGG TCCCAAGAGC CAGGGAGGGA 000160
000161 AGAGGGGCTG GCTCTCAGTC CCCGCCTCGC GGGAGGTGCC TCCGCCCCTT CCGATGGGGG TCCCAAGACC CAGGGAGGGG 000240
000241 AGAGGGGCTG GCTCTCAGTC CCCTCCTCCC GGGGGTACCT CCTCCGCCTG CGATGGGGGT CCCAAGAGAC AGGGGGGGAA 000320
000321 GAGGGGCTGG CTCTCAGTCC ACGCCTCGTG GGGGATGCCT CCCCCCCCTG CGATTGGGGT CCCAACAGCC AGCGGGGGAA 000400
000401 GAGGGGCTGG TTCTCAGTCC CCGCCTCGCG GGGGATGCct ccccgtgctg cgatgggggt cctaaaagcc agggggtgaa 000480
000481 aaggggctgg ctctcagtcc ccacctcgcg aggggtgcct ctcccccctg cgataggtgt cctaatagcc agggggggaa 000560
000561 gaggggctgg ctgtcagtcc ccacctcgcg aggggtgcct ctcccccctg cgacaggtgt cctaatagcc agggggggaa 000640
000641 gaggggctgg ctgtcagtcc ctgcctcgcg ggtggtcctt caccccgctg cgatgggggt cctaagagca agggggggaA 000720
000721 GTGGGGCTGG CTCTCTGTCC CCGCCTCGCC GGGGGTGCCT CGCACCCTTG CGATGGGGGT CCTAAGAGCC AGTAGGGGAA 000800
000801 GAGGAGCTGG CTCTCagtca cctcagcatg gagggccttt ctgttctggt tttgcccaag agtaagctta tttgcatctg 000880
000881 gttctagcaa gggaattgct gcgaaggccc tcaaacaggg gggccatcct ttcgaatccc tatctagttg tttagagatg 000960
000961 taggccaccg gcctcagcca aggccccaca gtttgggtta aaagtccagc tgccatcttt tctctctgac gcatacaatg 001040
001041 gaaaaggctt tgtgagatcg ggtagcccct cggctggggc tttcagaagt ttttccttta agtcatgaaa gacttgctgt 001120
001121 tgttggaatc cccattccaa aagttcccgg tccccgcccc cattgtgacc tcatacaaag gcttggctaa tactgcaaag 001200
001201 tttgggattc ccagtctaca aaaccccaca gctcctagga attctctcac cacccttgtg cctttaggct tcggtagatt 001280
001281 gcaaatgacc tgctttcttt cggatcccgg gctgctttcg gacacctgtc gaatagtaaa tcccaagtaa ggtacctgcg 001360
001361 gtcgtcggca gatctgaatt ttcttcttgg acacctaata cccacagccc tccagagacc gagaggttga tgtcactccc 001440
001441 aatatcggag gaagtataca cccccgtgtg agatggtcct taataatatt ccacggcgga gggggtgata tgactacata 001520
001521 catggcagaa agtggaaacc tcccagggat attgttccca cgatcctgga gggaagaaga tgatgttact ttcaatatga 001600
001601 cagaaggtgg atgaagtggt ggactgcccc tccacacctg tggacacgcc cccactgata ttccttctaa ttgcagcgtg 001680
001681 ggagaggagg atatgacacg cgatatcgca gggagtagaa acacccctgt gatactgttc ttaatattca gggaggaaga 001760
001761 ggatgatatt actcccaata cagacgggtg tacaccctct gtacaccgag ggtgtacacc tgtctgtgaa agagttctta 001840
001841 atctccagag ggggagatga tattactcac aatatggtaa agaggctgtg agtccacgga ggatcctcag agccagcggg 001920
001921 ggaagagggg ctggctctca gtccccgcct cgcgggggtg actcccccca gtgcgatggg ggtcctaaga gccagtgggg 002000
002001 gaagaggggc tggctctgag accccgcctc gcggggggtg cctccccgcc ctgtgatggg ggtcccaaga gccagaaggc 002080
002081 ttagaggggc tggctctcag tccccgcctc gcggggggtg cctcctcccc cTGCGATGGG GGTCGTAAGA GCCACTGGGG 002160
002161 GAATAGGGGC TTGCTCTCAG TCACCGCCTC GCGGGGGGTG CCTCctttcc tttctacata gacacagtga cagtctgatc 002240
002241 tctctttctt ttccctacaG ATGGacacgc ccccactgat attgttttta atgcagcgtg ggaggggagg atatgacacg 002320
002321 cgatatcgca ggtagtagaa acaccccttt gatagtgttc ttaatattca gggaggaaga agatgatgtt actcccaata 002400
002401 cagacggatg tacaccctct gtacaccgag ggtgtacacc cgtctgtgaa ggagttcgta atctccagag gtggagatga 002480
002481 tattactcac aatatggtaa acaggctgcg agtccatcgc ggatcctcag agccaggtgg ggaagagggg ctggctgtca 002560
002561 gtcccctcct cgcggggggt gcctccccca ctgctatggg gatcccaaga gccagtgggg gaagaggTGC TGGCTCTCAG 002640
002641 TCTCCGCCTC GCGAGGTGCC TCCCCACCCT GCGATCGGGG TCCGAAGAGC CAGGGGGGAA GAGGGGCTGG CTCtcttcgt 002720
002721 ggatgattct ttttccattc tcaggcagtt ttcttttttc tttctttctt tttttttttt ttgagactga gtcttgctct 002800
002801 gttgcccatg ctttgctcga tctcgggtga ctgcaaccac tgcctcccag gttcaagaga ttctcctgcc tcagcctcct 002880
002881 gagtagctgg gactagaggc gtgtgtcacc acacccagct aatttttgta tttttagtag agatggggtt tcaccatgtt 002960
002961 tgccaggatg gtctttatct cctgcccttg tgatccaccc acctcagcct cccaaagtgc tgggattgca ggtgcgagcc 003040
003041 accgggtcca gcctctcagg cgattttcat acctgcatac tctgatcact actctgttaa acagtcaagg agggtaagta 003120
003121 ttatcttcag atttccagag ctctgtctct gtacagccct ctcctcctca atattctgcc ctatgaattc tagccacatt 003200
003201 ggccttccca ggctcacagt tctgtcttct caactcagga agatctctga gttccatctg cattctttct tcctgtgctg 003280
003281 tggcctggaa agttttctaa ggtgttaggg aggtcaattg tggggctagc ctcatttgtt tctcatctct tgaggatcac 003360
003361 tgccctttga tgcttgattc cagtgattga ttccctttgt tgcttgaggg ccatagtttc atatattttg tccagtagtt 003440
003441 ttgttgtttt aggtcagaaa gtaattttgg tctctgttac tctatcttgg ccagaagtgt aagAcctaag catttacaca 003520
003521 tcaaaatact gcacacataa ttttagttta agctactttt taaaaaatct ccttcatttt ccatttagca ttctatttag 003600
003601 ggtattacat tggttttttt gaaattctgt tattggcagt ttctattgcc tatcaatccc atttaaagat agtgcatagg 003680
003681 gtattctaaa atagctgtta agcaaagaga aaattgggcc tgatagggtg agaatcacAG CTCTAATACC tagagtgacc 003760
003761 ttataatgta ttgtccaaag gagatatttt tgacagtgaa agagggtgtt gttagtaatt atatcaggac catggcctaa 003840
003841 accaggacta tcccaggaag cctgggacat atTTGTACCC CATCTCTATT TAATGCCTTT ATACAATTCT TTACttaatt 003920
003921 ctaccagcct ttattgagcc tgctttcttt gtctagctga gtgccacgtg ctgacgtcac taagatcaat acagcaaact 004000
004001 ctgaaagatg gacagagaga caggagatgg tcctttataa tgcagtgtga tctgtgctgc aatagagatg gaagagtgtt 004080
004081 ctgattggct ggaaaacaat gcacatggga agctgtacag aaatgagtgg ggaaagtttt ggaagctaga agttcaaaac 004160
004161 gaggtgttgg cagcaccatg ctctctctga agatgctagg aagaatctgc tccatgcctt tccattcgct cctggggttt 004240
004241 cctgcaagcc ctgacattcc ttggcttgta gatgcatcac cccagtttcc gcccccatca tcacatggcc tcctctctgt 004320
004321 gtgtgcctct gcgttccctc tattcttctt ctaaggacac cgacaccagt catagtggat taagggtcca ctcctaacca 004400
004401 attacatctg caacaaccct atttccaaat aaagtcacat tctaagattc ctagggagaa cctg
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