Difference between revisions of "NONHSAT131835"
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sequence = <dnaseq>AGTTGAGTACGAGCGGCAGCTGCGGGCGCCGGCAATCGAGTGGCTTCCTGGCCATGGAGAGGAGATCTGGACCCGAGGACGCCAGGGACTCCTCTCCGTCTCCCTGGACCGCTGTGTAGGCACCTGAGTTAACGGACGCTAAGCGGGGTAGGGGAAGTAACAGTGTATCATGTATGCCACTGATTCCAGGGGACACTCCCCTGCTTTCCTCCAACCTCAGAATGGAAATAGTCGTCACCCATCTGGCTATGTTCCAGGGAAGGTTGTCCCATTGCGTCCCCCTCCTCCTCCAAAGAGTCAAGCTTCAGCCAAATTTACCTCCATCAGACGAGAAGACCGGGCAACCTTCGCATTCTCACCTGAAGAACAGCAAGCCCAGAGAGAAAGTCAAAAGCAAAAGAGACACAAAAATACTTTCATTTGTTTTGCTATTACTAGTTTCTCATTTTTTATTGCACTTGCAATCATTTTAGGAATATCCTCAAAATATGCTCCAGATGGTAAGTGTGTGTATATGCACATAGAACATATTCTAGAAGACA</dnaseq>| | sequence = <dnaseq>AGTTGAGTACGAGCGGCAGCTGCGGGCGCCGGCAATCGAGTGGCTTCCTGGCCATGGAGAGGAGATCTGGACCCGAGGACGCCAGGGACTCCTCTCCGTCTCCCTGGACCGCTGTGTAGGCACCTGAGTTAACGGACGCTAAGCGGGGTAGGGGAAGTAACAGTGTATCATGTATGCCACTGATTCCAGGGGACACTCCCCTGCTTTCCTCCAACCTCAGAATGGAAATAGTCGTCACCCATCTGGCTATGTTCCAGGGAAGGTTGTCCCATTGCGTCCCCCTCCTCCTCCAAAGAGTCAAGCTTCAGCCAAATTTACCTCCATCAGACGAGAAGACCGGGCAACCTTCGCATTCTCACCTGAAGAACAGCAAGCCCAGAGAGAAAGTCAAAAGCAAAAGAGACACAAAAATACTTTCATTTGTTTTGCTATTACTAGTTTCTCATTTTTTATTGCACTTGCAATCATTTTAGGAATATCCTCAAAATATGCTCCAGATGGTAAGTGTGTGTATATGCACATAGAACATATTCTAGAAGACA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG052543]] | + | [[Category:Sense]][[Category:NONHSAG052543]][[Category:Transcripts]] |
Latest revision as of 07:19, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT131835 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
542 nt |
| Genomic location |
chr9-:74364917..74383429 |
| Exon number |
2 |
| Exons |
74364917..74365301,74383273..74383429 |
| Genome context |
|
| Sequence |
000001 AGTTGAGTAC GAGCGGCAGC TGCGGGCGCC GGCAATCGAG TGGCTTCCTG GCCATGGAGA GGAGATCTGG ACCCGAGGAC 000080
000081 GCCAGGGACT CCTCTCCGTC TCCCTGGACC GCTGTGTAGG CACCTGAGTT AACGGACGCT AAGCGGGGTA GGGGAAGTAA 000160 000161 CAGTGTATCA TGTATGCCAC TGATTCCAGG GGACACTCCC CTGCTTTCCT CCAACCTCAG AATGGAAATA GTCGTCACCC 000240 000241 ATCTGGCTAT GTTCCAGGGA AGGTTGTCCC ATTGCGTCCC CCTCCTCCTC CAAAGAGTCA AGCTTCAGCC AAATTTACCT 000320 000321 CCATCAGACG AGAAGACCGG GCAACCTTCG CATTCTCACC TGAAGAACAG CAAGCCCAGA GAGAAAGTCA AAAGCAAAAG 000400 000401 AGACACAAAA ATACTTTCAT TTGTTTTGCT ATTACTAGTT TCTCATTTTT TATTGCACTT GCAATCATTT TAGGAATATC 000480 000481 CTCAAAATAT GCTCCAGATG GTAAGTGTGT GTATATGCAC ATAGAACATA TTCTAGAAGA CA |
Predicted Small Protein
| Name | NONHSAT131835_smProtein_173:472 |
| Length | 100 |
| Molecular weight | 11223.2184 |
| Aromaticity | 0.040404040404 |
| Instability index | 40.103030303 |
| Isoelectric point | 10.2166137695 |
| Runs | 12 |
| Runs residual | 0.0124777183601 |
| Runs probability | 0.0229935818171 |
| Amino acid sequence | MPLIPGDTPLLSSNLRMEIVVTHLAMFQGRLSHCVPLLLQRVKLQPNLPPSDEKTGQPSH SHLKNSKPREKVKSKRDTKILSFVLLLLVSHFLLHLQSF |
| Secondary structure | LLLLLLLLLLLLLLLEEHHHHHHHHHHHLLHHHLHHHHHHHHHHLLLLLLLLLLLLLLLL LLLLLLLLLHHHLLLLLLHHHHHHHHHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
