Difference between revisions of "NONHSAT132726"

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sequence = <dnaseq>AAGCTGCACATTTCCTTCCCAGCTACTGGCTGCCAGAAGTTCATTGAAGTAGATAATGACAGCAAACCTCATACCTTTGTGAGAAGCGTATGGCCACAGAAATTGCTGCTGACACTCTGAGTGAAGAATAGAAGGGTTATGTGTACAAAATCAGTAGTGGGAAAAAACAAACAAGTTTTCCTCATGAAGCAGGGTACCTTGACCATGGCCATGTCTGCCTGCTGCTGAGCAGGGGCATTCCTGTAATAGACCAAGGAGGACTTGGGAAAGGAGGTGCTAATCTGTTCTGGGTTTATTGTGGACGCCAATCTGTGTGTTCTCACTTTGGTTATTTTTTTTTTTTTTAAGGAGGAAGATATTCTTGGACTGCCTTACTACTGTGCCTCGTCACCTGGGGCCTGAGAGAGCTAGCGGTGTCTGCAAATTTTCCAACTCTCTAAAGAAGATGATGTCCACCAGTTTGCTAAGAGAAAGCCCCTGAATAAAGACAGTAAGAAACTCAGGACCAAATTGCTAGAGATTCAGTGTCTTGTTACTCAGCATGTCCTGCAATACAGATGTAAGCACATTGTTCTAAACAAACAACATACTTGAAAAAAATAAGGACTAGGCAGCAGAATATGATAAACTTTTGCCCAAGACACCAGAGAAGGCCAAAGAAAAACAAAACAATAGGAACGGATTGCCAAGAGATGGGGGCTGTCTTCTCTGAGGGTTTCTGAGTCC</dnaseq>|
 
sequence = <dnaseq>AAGCTGCACATTTCCTTCCCAGCTACTGGCTGCCAGAAGTTCATTGAAGTAGATAATGACAGCAAACCTCATACCTTTGTGAGAAGCGTATGGCCACAGAAATTGCTGCTGACACTCTGAGTGAAGAATAGAAGGGTTATGTGTACAAAATCAGTAGTGGGAAAAAACAAACAAGTTTTCCTCATGAAGCAGGGTACCTTGACCATGGCCATGTCTGCCTGCTGCTGAGCAGGGGCATTCCTGTAATAGACCAAGGAGGACTTGGGAAAGGAGGTGCTAATCTGTTCTGGGTTTATTGTGGACGCCAATCTGTGTGTTCTCACTTTGGTTATTTTTTTTTTTTTTAAGGAGGAAGATATTCTTGGACTGCCTTACTACTGTGCCTCGTCACCTGGGGCCTGAGAGAGCTAGCGGTGTCTGCAAATTTTCCAACTCTCTAAAGAAGATGATGTCCACCAGTTTGCTAAGAGAAAGCCCCTGAATAAAGACAGTAAGAAACTCAGGACCAAATTGCTAGAGATTCAGTGTCTTGTTACTCAGCATGTCCTGCAATACAGATGTAAGCACATTGTTCTAAACAAACAACATACTTGAAAAAAATAAGGACTAGGCAGCAGAATATGATAAACTTTTGCCCAAGACACCAGAGAAGGCCAAAGAAAAACAAAACAATAGGAACGGATTGCCAAGAGATGGGGGCTGTCTTCTCTGAGGGTTTCTGAGTCC</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG052673]]
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[[Category:Intergenic]][[Category:NONHSAG052673]][[Category:Transcripts]]

Latest revision as of 07:20, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT132726

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

726 nt

Genomic location

chr9-:85358982..85359707

Exon number

1

Exons

85358982..85359707

Genome context

Sequence
000001 AAGCTGCACA TTTCCTTCCC AGCTACTGGC TGCCAGAAGT TCATTGAAGT AGATAATGAC AGCAAACCTC ATACCTTTGT 000080
000081 GAGAAGCGTA TGGCCACAGA AATTGCTGCT GACACTCTGA GTGAAGAATA GAAGGGTTAT GTGTACAAAA TCAGTAGTGG 000160
000161 GAAAAAACAA ACAAGTTTTC CTCATGAAGC AGGGTACCTT GACCATGGCC ATGTCTGCCT GCTGCTGAGC AGGGGCATTC 000240
000241 CTGTAATAGA CCAAGGAGGA CTTGGGAAAG GAGGTGCTAA TCTGTTCTGG GTTTATTGTG GACGCCAATC TGTGTGTTCT 000320
000321 CACTTTGGTT ATTTTTTTTT TTTTTAAGGA GGAAGATATT CTTGGACTGC CTTACTACTG TGCCTCGTCA CCTGGGGCCT 000400
000401 GAGAGAGCTA GCGGTGTCTG CAAATTTTCC AACTCTCTAA AGAAGATGAT GTCCACCAGT TTGCTAAGAG AAAGCCCCTG 000480
000481 AATAAAGACA GTAAGAAACT CAGGACCAAA TTGCTAGAGA TTCAGTGTCT TGTTACTCAG CATGTCCTGC AATACAGATG 000560
000561 TAAGCACATT GTTCTAAACA AACAACATAC TTGAAAAAAA TAAGGACTAG GCAGCAGAAT ATGATAAACT TTTGCCCAAG 000640
000641 ACACCAGAGA AGGCCAAAGA AAAACAAAAC AATAGGAACG GATTGCCAAG AGATGGGGGC TGTCTTCTCT GAGGGTTTCT 000720
000721 GAGTCC
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Predicted Small Protein

Name NONHSAT132726_smProtein_620:721
Length 34
Molecular weight 3827.4003
Aromaticity 0.0909090909091
Instability index 49.1424242424
Isoelectric point 9.38262939453
Runs 5
Runs residual 0.0326086956522
Runs probability 0.00703055997172
Amino acid sequence MINFCPRHQRRPKKNKTIGTDCQEMGAVFSEGF
Secondary structure LLLLLLLLLLLLLLLLLLLLLHHHHLLEELLLL
PRMN -
PiMo -