Difference between revisions of "NONHSAT132794"
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sequence = <dnaseq>TCAACGGAGCTGCTCTTCAGAAATCTGTACCTTTGGAAGAACACTGGGACAAAGAACATTCGAATGCTACCTGAGGCTGCAGAGAAGGAAACAGAAACCAGTGGTCAAATAAAaaaaaaataaaaaataaaaaaaataaaaAATAAGGCTGGAAGCTCCACTATGAAGTTACTTGGACAGGAGTTGGACTTGCTAAAAAATGGAAAATGTGAACACATCACACATCTGGAGCAAGTGTTTGAGACCCCTAAGTGAATGTACCTTGTGATGGGGCTCTGTGAACAGGGAGAATTTGAAGAAATTCTGAATAGGAGAGGGCACATCCAGAGAATGAGTCAAGGTAGGTCATCCTAAGCCTCACATCTGCTGTAGCGTGTCTTCACAATAAAGTACATAGAAATCTGAAACTGGAGAGCATAATGGTTCAAAGCAGCTTTATTGATGCTAACAACAAACTGAACTTCAACATAAAGGTAATTTTGGCTTAGCAGGGAGGAAGCCATGCTGCGCACCACATGTGGGGCTCCCGTCTGCATGACCCCTGAAGTTATCAATGCCCATAGCTATAGCCAGCAATGTGACACTGGGGCCATCAGGTCACAAGGACATATCGTTATGTGGGAACCCCCTTTATGGCAAGTTCAGAAGAGACATTTTTGAATTAACAGAAAGAGAGAGCTACATTTTGAAGATCCACTTTGGGATTCTATAAGTGATTGCACTAAAAGCATTTTGAAACGACTTATCAAAGTGGATCCTGCTCCCAGAATCACAGCTAAGGAACTGCTCGATGCCCAACGGCCAGCAGGCCATACACTTCCTTTGGCGAGATCAACCAATGTGATAGAAATGATTTAAGAATGGAAAGACAACCCAGGAACCGATGAGGAAAACACAGCAGGTCGAAAAAAGAGCAACTGCTTCATTCAAAGATAGTTGAGAAGCTACCAACCCGAGGAAATGCCACTGATGTCCTAACACTTCAATTGAAGAAGAGGAAAACCAGCCCTTTTGTGAAAAGATATCATCTGTGTCCAGTAAGAAGGCAAATATGGACAGAAGGCAAATATGGACAAGCAAATAAGGGCCACATGTAGCAACCACTTTCTGTTGGGCTCAGTGGAGACATAGAGAAACCCCCTGTGACTTCAAGACAGAGAATAACAACCAAATGCACTACTAAATCAACTGCAATGCCCTGTGTAGAACCAAATAAGG</dnaseq>| | sequence = <dnaseq>TCAACGGAGCTGCTCTTCAGAAATCTGTACCTTTGGAAGAACACTGGGACAAAGAACATTCGAATGCTACCTGAGGCTGCAGAGAAGGAAACAGAAACCAGTGGTCAAATAAAaaaaaaataaaaaataaaaaaaataaaaAATAAGGCTGGAAGCTCCACTATGAAGTTACTTGGACAGGAGTTGGACTTGCTAAAAAATGGAAAATGTGAACACATCACACATCTGGAGCAAGTGTTTGAGACCCCTAAGTGAATGTACCTTGTGATGGGGCTCTGTGAACAGGGAGAATTTGAAGAAATTCTGAATAGGAGAGGGCACATCCAGAGAATGAGTCAAGGTAGGTCATCCTAAGCCTCACATCTGCTGTAGCGTGTCTTCACAATAAAGTACATAGAAATCTGAAACTGGAGAGCATAATGGTTCAAAGCAGCTTTATTGATGCTAACAACAAACTGAACTTCAACATAAAGGTAATTTTGGCTTAGCAGGGAGGAAGCCATGCTGCGCACCACATGTGGGGCTCCCGTCTGCATGACCCCTGAAGTTATCAATGCCCATAGCTATAGCCAGCAATGTGACACTGGGGCCATCAGGTCACAAGGACATATCGTTATGTGGGAACCCCCTTTATGGCAAGTTCAGAAGAGACATTTTTGAATTAACAGAAAGAGAGAGCTACATTTTGAAGATCCACTTTGGGATTCTATAAGTGATTGCACTAAAAGCATTTTGAAACGACTTATCAAAGTGGATCCTGCTCCCAGAATCACAGCTAAGGAACTGCTCGATGCCCAACGGCCAGCAGGCCATACACTTCCTTTGGCGAGATCAACCAATGTGATAGAAATGATTTAAGAATGGAAAGACAACCCAGGAACCGATGAGGAAAACACAGCAGGTCGAAAAAAGAGCAACTGCTTCATTCAAAGATAGTTGAGAAGCTACCAACCCGAGGAAATGCCACTGATGTCCTAACACTTCAATTGAAGAAGAGGAAAACCAGCCCTTTTGTGAAAAGATATCATCTGTGTCCAGTAAGAAGGCAAATATGGACAGAAGGCAAATATGGACAAGCAAATAAGGGCCACATGTAGCAACCACTTTCTGTTGGGCTCAGTGGAGACATAGAGAAACCCCCTGTGACTTCAAGACAGAGAATAACAACCAAATGCACTACTAAATCAACTGCAATGCCCTGTGTAGAACCAAATAAGG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG052704]] | + | [[Category:Intergenic]][[Category:NONHSAG052704]][[Category:Transcripts]] |
Latest revision as of 07:21, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT132794 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1218 nt |
Genomic location |
chr9+:88107494..88109009 |
Exon number |
2 |
Exons |
88107494..88107606,88107905..88109009 |
Genome context |
|
Sequence |
000001 TCAACGGAGC TGCTCTTCAG AAATCTGTAC CTTTGGAAGA ACACTGGGAC AAAGAACATT CGAATGCTAC CTGAGGCTGC 000080
000081 AGAGAAGGAA ACAGAAACCA GTGGTCAAAT AAAaaaaaaa taaaaaataa aaaaaataaa aAATAAGGCT GGAAGCTCCA 000160 000161 CTATGAAGTT ACTTGGACAG GAGTTGGACT TGCTAAAAAA TGGAAAATGT GAACACATCA CACATCTGGA GCAAGTGTTT 000240 000241 GAGACCCCTA AGTGAATGTA CCTTGTGATG GGGCTCTGTG AACAGGGAGA ATTTGAAGAA ATTCTGAATA GGAGAGGGCA 000320 000321 CATCCAGAGA ATGAGTCAAG GTAGGTCATC CTAAGCCTCA CATCTGCTGT AGCGTGTCTT CACAATAAAG TACATAGAAA 000400 000401 TCTGAAACTG GAGAGCATAA TGGTTCAAAG CAGCTTTATT GATGCTAACA ACAAACTGAA CTTCAACATA AAGGTAATTT 000480 000481 TGGCTTAGCA GGGAGGAAGC CATGCTGCGC ACCACATGTG GGGCTCCCGT CTGCATGACC CCTGAAGTTA TCAATGCCCA 000560 000561 TAGCTATAGC CAGCAATGTG ACACTGGGGC CATCAGGTCA CAAGGACATA TCGTTATGTG GGAACCCCCT TTATGGCAAG 000640 000641 TTCAGAAGAG ACATTTTTGA ATTAACAGAA AGAGAGAGCT ACATTTTGAA GATCCACTTT GGGATTCTAT AAGTGATTGC 000720 000721 ACTAAAAGCA TTTTGAAACG ACTTATCAAA GTGGATCCTG CTCCCAGAAT CACAGCTAAG GAACTGCTCG ATGCCCAACG 000800 000801 GCCAGCAGGC CATACACTTC CTTTGGCGAG ATCAACCAAT GTGATAGAAA TGATTTAAGA ATGGAAAGAC AACCCAGGAA 000880 000881 CCGATGAGGA AAACACAGCA GGTCGAAAAA AGAGCAACTG CTTCATTCAA AGATAGTTGA GAAGCTACCA ACCCGAGGAA 000960 000961 ATGCCACTGA TGTCCTAACA CTTCAATTGA AGAAGAGGAA AACCAGCCCT TTTGTGAAAA GATATCATCT GTGTCCAGTA 001040 001041 AGAAGGCAAA TATGGACAGA AGGCAAATAT GGACAAGCAA ATAAGGGCCA CATGTAGCAA CCACTTTCTG TTGGGCTCAG 001120 001121 TGGAGACATA GAGAAACCCC CTGTGACTTC AAGACAGAGA ATAACAACCA AATGCACTAC TAAATCAACT GCAATGCCCT 001200 001201 GTGTAGAACC AAATAAGG |
Predicted Small Protein
Name | NONHSAT132794_smProtein_419:487 |
Length | 23 |
Molecular weight | 2479.8909 |
Aromaticity | 0.0909090909091 |
Instability index | 59.3545454545 |
Isoelectric point | 8.34503173828 |
Runs | 5 |
Runs residual | 0.00909090909091 |
Runs probability | 0.0477124183008 |
Amino acid sequence | MVQSSFIDANNKLNFNIKVILA |
Secondary structure | LLHHHHHHHHHHHLLLEEEEEL |
PRMN | - |
PiMo | - |