Difference between revisions of "NONHSAT132794"

From LncRNAWiki
Jump to: navigation, search
 
Line 42: Line 42:
 
sequence = <dnaseq>TCAACGGAGCTGCTCTTCAGAAATCTGTACCTTTGGAAGAACACTGGGACAAAGAACATTCGAATGCTACCTGAGGCTGCAGAGAAGGAAACAGAAACCAGTGGTCAAATAAAaaaaaaataaaaaataaaaaaaataaaaAATAAGGCTGGAAGCTCCACTATGAAGTTACTTGGACAGGAGTTGGACTTGCTAAAAAATGGAAAATGTGAACACATCACACATCTGGAGCAAGTGTTTGAGACCCCTAAGTGAATGTACCTTGTGATGGGGCTCTGTGAACAGGGAGAATTTGAAGAAATTCTGAATAGGAGAGGGCACATCCAGAGAATGAGTCAAGGTAGGTCATCCTAAGCCTCACATCTGCTGTAGCGTGTCTTCACAATAAAGTACATAGAAATCTGAAACTGGAGAGCATAATGGTTCAAAGCAGCTTTATTGATGCTAACAACAAACTGAACTTCAACATAAAGGTAATTTTGGCTTAGCAGGGAGGAAGCCATGCTGCGCACCACATGTGGGGCTCCCGTCTGCATGACCCCTGAAGTTATCAATGCCCATAGCTATAGCCAGCAATGTGACACTGGGGCCATCAGGTCACAAGGACATATCGTTATGTGGGAACCCCCTTTATGGCAAGTTCAGAAGAGACATTTTTGAATTAACAGAAAGAGAGAGCTACATTTTGAAGATCCACTTTGGGATTCTATAAGTGATTGCACTAAAAGCATTTTGAAACGACTTATCAAAGTGGATCCTGCTCCCAGAATCACAGCTAAGGAACTGCTCGATGCCCAACGGCCAGCAGGCCATACACTTCCTTTGGCGAGATCAACCAATGTGATAGAAATGATTTAAGAATGGAAAGACAACCCAGGAACCGATGAGGAAAACACAGCAGGTCGAAAAAAGAGCAACTGCTTCATTCAAAGATAGTTGAGAAGCTACCAACCCGAGGAAATGCCACTGATGTCCTAACACTTCAATTGAAGAAGAGGAAAACCAGCCCTTTTGTGAAAAGATATCATCTGTGTCCAGTAAGAAGGCAAATATGGACAGAAGGCAAATATGGACAAGCAAATAAGGGCCACATGTAGCAACCACTTTCTGTTGGGCTCAGTGGAGACATAGAGAAACCCCCTGTGACTTCAAGACAGAGAATAACAACCAAATGCACTACTAAATCAACTGCAATGCCCTGTGTAGAACCAAATAAGG</dnaseq>|
 
sequence = <dnaseq>TCAACGGAGCTGCTCTTCAGAAATCTGTACCTTTGGAAGAACACTGGGACAAAGAACATTCGAATGCTACCTGAGGCTGCAGAGAAGGAAACAGAAACCAGTGGTCAAATAAAaaaaaaataaaaaataaaaaaaataaaaAATAAGGCTGGAAGCTCCACTATGAAGTTACTTGGACAGGAGTTGGACTTGCTAAAAAATGGAAAATGTGAACACATCACACATCTGGAGCAAGTGTTTGAGACCCCTAAGTGAATGTACCTTGTGATGGGGCTCTGTGAACAGGGAGAATTTGAAGAAATTCTGAATAGGAGAGGGCACATCCAGAGAATGAGTCAAGGTAGGTCATCCTAAGCCTCACATCTGCTGTAGCGTGTCTTCACAATAAAGTACATAGAAATCTGAAACTGGAGAGCATAATGGTTCAAAGCAGCTTTATTGATGCTAACAACAAACTGAACTTCAACATAAAGGTAATTTTGGCTTAGCAGGGAGGAAGCCATGCTGCGCACCACATGTGGGGCTCCCGTCTGCATGACCCCTGAAGTTATCAATGCCCATAGCTATAGCCAGCAATGTGACACTGGGGCCATCAGGTCACAAGGACATATCGTTATGTGGGAACCCCCTTTATGGCAAGTTCAGAAGAGACATTTTTGAATTAACAGAAAGAGAGAGCTACATTTTGAAGATCCACTTTGGGATTCTATAAGTGATTGCACTAAAAGCATTTTGAAACGACTTATCAAAGTGGATCCTGCTCCCAGAATCACAGCTAAGGAACTGCTCGATGCCCAACGGCCAGCAGGCCATACACTTCCTTTGGCGAGATCAACCAATGTGATAGAAATGATTTAAGAATGGAAAGACAACCCAGGAACCGATGAGGAAAACACAGCAGGTCGAAAAAAGAGCAACTGCTTCATTCAAAGATAGTTGAGAAGCTACCAACCCGAGGAAATGCCACTGATGTCCTAACACTTCAATTGAAGAAGAGGAAAACCAGCCCTTTTGTGAAAAGATATCATCTGTGTCCAGTAAGAAGGCAAATATGGACAGAAGGCAAATATGGACAAGCAAATAAGGGCCACATGTAGCAACCACTTTCTGTTGGGCTCAGTGGAGACATAGAGAAACCCCCTGTGACTTCAAGACAGAGAATAACAACCAAATGCACTACTAAATCAACTGCAATGCCCTGTGTAGAACCAAATAAGG</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG052704]]
+
[[Category:Intergenic]][[Category:NONHSAG052704]][[Category:Transcripts]]

Latest revision as of 07:21, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT132794

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1218 nt

Genomic location

chr9+:88107494..88109009

Exon number

2

Exons

88107494..88107606,88107905..88109009

Genome context

Sequence
000001 TCAACGGAGC TGCTCTTCAG AAATCTGTAC CTTTGGAAGA ACACTGGGAC AAAGAACATT CGAATGCTAC CTGAGGCTGC 000080
000081 AGAGAAGGAA ACAGAAACCA GTGGTCAAAT AAAaaaaaaa taaaaaataa aaaaaataaa aAATAAGGCT GGAAGCTCCA 000160
000161 CTATGAAGTT ACTTGGACAG GAGTTGGACT TGCTAAAAAA TGGAAAATGT GAACACATCA CACATCTGGA GCAAGTGTTT 000240
000241 GAGACCCCTA AGTGAATGTA CCTTGTGATG GGGCTCTGTG AACAGGGAGA ATTTGAAGAA ATTCTGAATA GGAGAGGGCA 000320
000321 CATCCAGAGA ATGAGTCAAG GTAGGTCATC CTAAGCCTCA CATCTGCTGT AGCGTGTCTT CACAATAAAG TACATAGAAA 000400
000401 TCTGAAACTG GAGAGCATAA TGGTTCAAAG CAGCTTTATT GATGCTAACA ACAAACTGAA CTTCAACATA AAGGTAATTT 000480
000481 TGGCTTAGCA GGGAGGAAGC CATGCTGCGC ACCACATGTG GGGCTCCCGT CTGCATGACC CCTGAAGTTA TCAATGCCCA 000560
000561 TAGCTATAGC CAGCAATGTG ACACTGGGGC CATCAGGTCA CAAGGACATA TCGTTATGTG GGAACCCCCT TTATGGCAAG 000640
000641 TTCAGAAGAG ACATTTTTGA ATTAACAGAA AGAGAGAGCT ACATTTTGAA GATCCACTTT GGGATTCTAT AAGTGATTGC 000720
000721 ACTAAAAGCA TTTTGAAACG ACTTATCAAA GTGGATCCTG CTCCCAGAAT CACAGCTAAG GAACTGCTCG ATGCCCAACG 000800
000801 GCCAGCAGGC CATACACTTC CTTTGGCGAG ATCAACCAAT GTGATAGAAA TGATTTAAGA ATGGAAAGAC AACCCAGGAA 000880
000881 CCGATGAGGA AAACACAGCA GGTCGAAAAA AGAGCAACTG CTTCATTCAA AGATAGTTGA GAAGCTACCA ACCCGAGGAA 000960
000961 ATGCCACTGA TGTCCTAACA CTTCAATTGA AGAAGAGGAA AACCAGCCCT TTTGTGAAAA GATATCATCT GTGTCCAGTA 001040
001041 AGAAGGCAAA TATGGACAGA AGGCAAATAT GGACAAGCAA ATAAGGGCCA CATGTAGCAA CCACTTTCTG TTGGGCTCAG 001120
001121 TGGAGACATA GAGAAACCCC CTGTGACTTC AAGACAGAGA ATAACAACCA AATGCACTAC TAAATCAACT GCAATGCCCT 001200
001201 GTGTAGAACC AAATAAGG
[back to top]

Predicted Small Protein

Name NONHSAT132794_smProtein_419:487
Length 23
Molecular weight 2479.8909
Aromaticity 0.0909090909091
Instability index 59.3545454545
Isoelectric point 8.34503173828
Runs 5
Runs residual 0.00909090909091
Runs probability 0.0477124183008
Amino acid sequence MVQSSFIDANNKLNFNIKVILA
Secondary structure LLHHHHHHHHHHHLLLEEEEEL
PRMN -
PiMo -