Difference between revisions of "NONHSAT040875"
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| − | + | ''PWRN2'',prader-willi region non-protein-coding RNA 2 of 5128 bp,located between NDN and C15orf2. | |
==Annotated Information== | ==Annotated Information== | ||
===Transcriptomic Nomeclature=== | ===Transcriptomic Nomeclature=== | ||
| − | + | ''PWRN2'': Prader-Willi region non-protein coding RNA 2(HGNC nomenclature) | |
| + | |||
| + | ''NCRNA00199'', "non-protein coding RNA 199"<ref name="ref1" /> | ||
| + | |||
| + | ===Characteristics=== | ||
| + | [[File:phisical maps of ''PWRN2''.png|right|thumb|400px|'''phisical maps of ''PWRN2'''''<ref name="ref1" />]] | ||
| + | |||
| + | ''PWRN2'',prader-willi region non-protein-coding RNA 2 of 5128 bp,located between NDN and C15orf2 in 15q11.2<ref name="ref1" />. | ||
===Function=== | ===Function=== | ||
| Line 12: | Line 19: | ||
===Expression=== | ===Expression=== | ||
| − | + | For PWRN2 the following primers were used, | |
| + | {|class='wikitable' style="text-align:center" | ||
| + | |- | ||
| + | ! | Primer | ||
| + | ! | Sequences | ||
| + | |- | ||
| + | | | BI561478-F1 | ||
| + | | | 5'-GCCCTTTAGTGGGGATCTGT-3'<ref name="ref1" /> | ||
| + | |- | ||
| + | | | CD557156-R2 | ||
| + | | | 5'-AAGCATGAAGGCTTGGACAT-3'<ref name="ref1" /> | ||
| + | |} | ||
===Allelic Information and Variation=== | ===Allelic Information and Variation=== | ||
| − | + | PWRN2 is expressed only in testis and is biallelic<ref name="ref1" />. | |
| − | |||
| − | = | ||
| − | |||
| − | |||
==Labs working on this lncRNA== | ==Labs working on this lncRNA== | ||
| − | + | * Institut für Humangenetik, Universitätsklinikum Essen, Hufelandstrasse 55, 45122 Essen, Germany<ref name="ref1" />. | |
==References== | ==References== | ||
| − | + | <references> | |
| + | <ref name="ref1">Buiting K, Nazlican H, Galetzka D, Wawrzik M, Gross S, Horsthemke B. C15orf2 and a novel noncoding transcript from the Prader-Willi/Angelman syndrome region show monoallelic expression in fetal brain[J]. Genomics. 2007,89(5):588-95.</ref> | ||
| + | </references> | ||
{{basic| | {{basic| | ||
tID = NONHSAT040875| | tID = NONHSAT040875| | ||
source = NONCODE4.0| | source = NONCODE4.0| | ||
| − | same = ,| | + | same = ''PWRN2'', ''NCRNA00199''| |
classification = intergenic| | classification = intergenic| | ||
length = 5128 nt| | length = 5128 nt| | ||
Revision as of 03:39, 21 April 2015
PWRN2,prader-willi region non-protein-coding RNA 2 of 5128 bp,located between NDN and C15orf2.
Contents
Annotated Information
Transcriptomic Nomeclature
PWRN2: Prader-Willi region non-protein coding RNA 2(HGNC nomenclature)
NCRNA00199, "non-protein coding RNA 199"[1]
Characteristics
phisical maps of PWRN2[1]
PWRN2,prader-willi region non-protein-coding RNA 2 of 5128 bp,located between NDN and C15orf2 in 15q11.2[1].
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
For PWRN2 the following primers were used,
| Primer | Sequences |
|---|---|
| BI561478-F1 | 5'-GCCCTTTAGTGGGGATCTGT-3'[1] |
| CD557156-R2 | 5'-AAGCATGAAGGCTTGGACAT-3'[1] |
Allelic Information and Variation
PWRN2 is expressed only in testis and is biallelic[1].
Labs working on this lncRNA
- Institut für Humangenetik, Universitätsklinikum Essen, Hufelandstrasse 55, 45122 Essen, Germany[1].
References
Basic Information
| Transcript ID |
NONHSAT040875 |
| Source |
NONCODE4.0 |
| Same with |
PWRN2, NCRNA00199 |
| Classification |
intergenic |
| Length |
5128 nt |
| Genomic location |
chr15-:24409926..24415053 |
| Exon number |
1 |
| Exons |
24409926..24415053 |
| Genome context |
|
| Sequence |
000001 GGGCTTTGCT CCACTTGGAG TCAGCTGATT GACAGGAGGG CATCTGAAAT TGAGAGGAGA TTTCAGGACG TTTACCCAGC 000080
000081 CCTTTAGTGG GGATCTGTCC GGGACTGTGC AGTCTGAACC TGCAACTGTA AAAGGTACAA TATCTACATT TAGGCCCTCA 000160 000161 TCTCTGTCTC TCTCTCCTCC TCCTCCTTTC CTCTGCAGGG TGATCTGCAT AAGCCCCACT CCATCCAGGA TCCGGCCCTG 000240 000241 GAGGGAAACA GCCTCCACTG CCCTAGCAGG GTCACTCTTT TTAGGGCCCT GGAGTACTTC TCACAGCTGT GCCAGTTTTT 000320 000321 ATGGGGAAAG GAAGGATGTG AACAATTCCA TAGGTTATCT AAAGGGCTTG CCACCATGCT TATGGTGCTT AATGTTGTTT 000400 000401 ATGTGAAAAA AAGCTTAACA GCATATGGGA TAAGTATTTA GGCAGTCCTG ACTCCAACCC CTCTGCCCTT TTTATCTGCC 000480 000481 TAATTTACCA TTTAATTTGT TGCCATTCGG TTACCATCTA CTAGGGTACT AAGGACAGCA GAACATGGAC TTGGGATGAA 000560 000561 GTTGATGTGC TGGTGGGCCG GGGCAGGGGG TGGAGCGGGG GCAGGGTGGT GGTGGGGGAG TGCTGTGCTA GCTGGTGCTA 000640 000641 ATCACTAGCC TGCCCAACTA GTTTATTCTC TGGTCTCTTT GGCTGTCCCA GCTGTGTGGT GAGATTTCCA CAAGTCTTCC 000720 000721 TTTTAGGACC ATGAGTGGTA TTAATTGCAC TGCTTATATG AAGCTAGAAA CGTCTTTCCA ACCCATAGAG GTCTGGTTGA 000800 000801 AGGATATGAG CAGTGCAGAA CAGAAGAGAG ACAACAAATA AAAGTTGTCA TCACTGTTTC ACAGGGATGA GCAGTATGGA 000880 000881 CATAGAAACC ACGTCAGGAG GGGAAACAAG GTCTCTATCA CCTCTGGGAG GCCCCTGGGG CATACCCTAG CTAACTGTAG 000960 000961 AGCCTATAGC TATCAGCCCA TGACTAACAG AAAAATGGTC TATTATTGCA GTGCTGTTTG GACTGTGGAC AAGTTAGGTT 001040 001041 ATAAATTTTG ACCTCTGAAT GGACGCAACC AATATTAGCC TTTAATGCAG TTAGACTCAT TTTGTCAGAG GTCTGGAAAA 001120 001121 TTAGGAAAAA CTACCATATG TCCAAGCCTT CATGCTTTTC GAAAATCAGG ATTCATACCA TGAGGGAAGA TGCCAGCTGC 001200 001201 TAGCTATACC AAAGGACAGA ATGGAAAAAA GGCTCTTCAC AAGCCAGAGA GCCAAACTCA GGCAGAAAGC AATGAAGAAG 001280 001281 AATTAGGACT TTTAAATGTC CTACACCCAA GCTGTTTTAG CAGCTCCAAC CACCACAGCC AGAACGCACC TGGCCTCTGC 001360 001361 TCCACCTCAA CAGCTCCCAC TGCAGTACCA CCATACGGGG CCCTTAGCAC TGGCCTCTGC GTTGGACCGG ATTGCCTTGA 001440 001441 TGCTACCAAG TGAGGCATCA GACCAATAAG AGGGAGCTAC TCTGCCGCCT CAGTATAATG AGAGAACAGA GACGGCCTCT 001520 001521 CCCTCCAGTG CTTGACAGGG AACATGATTT AGCAAGGAAT TGCCATGGCC GGAGCAAAGG AATTACCGTT TACAGGGATG 001600 001601 GCCATGGGTG GCTTGGATGA GAGTGGGCAA CCTGTCAGAC ATTACTGGAC ATCCAGCCCA TTTTCAACAT CTAACTTGTG 001680 001681 AAATGGAAAA ACTCCACCCC ACTTTATACA ATGGATCCCC AGAAAATGAC TGATCTCTAT GTGTCTATCT GTGCTACCCA 001760 001761 CCAGCGTACC TGAGCAGATG TGTAGTCTCT CCTAAATATG TTTCTGACTG CAGACCAAAG AAGGTCCAGA GTCTTGGTGC 001840 001841 CTCCATGAAA CAAATCCAAA TACCCCAAAC CTGAAGGGAC CATTCTGGAT GCAAACCCTA ATTGGGGCTC CAATTGATAA 001920 001921 GGGGACATGG CCCATCTGGA ATATTCACAA ACATTCTTCC TGTTTGGACT CAGGAAAGGG GTACCAAAAC AGGAAGCCTC 002000 002001 ACTAGGAATG ACCCCTTCCC CGCTCCAGAG ACAAAGAAAC AGAAGTTTCA ACCATAAACG TGGAATGAAC AAGGAAGCCT 002080 002081 CTGCATCAGA AAAATCGAGG CAAGCCTCTG GAACACAGCC AGTGTGCCTA GTGTAAGGAG AAAGGCCACT GAAAGGATGA 002160 002161 CTGTCCCAAA AGAAAGGACC AAGGGGCCAG AAAAAGGAGG AATATGATGA GGAAAAAGCT CAAAGTCAAA TCATGGAGCA 002240 002241 GGGTCACTGC TCTGACCACA GAGAGTGATG CCTGGGGACT CTCCTTAATC ACTCAGAGAC AATTAAAATT TCCCCACAGG 002320 002321 AACCCTGGGT ACAACTGACA GTGAGGAAAA AGTTAATTGA TTTCCTGGTT GATACTGGGC AAACTATTCA GTTTTAACAC 002400 002401 TTTATGAGCA AAAAGCACCA AAATGATTGT ACCTGTGATA GGAGTTGCAA GAATAATGCA ACAAAAGGCT TTCCTACAAC 002480 002481 CTTTAGAATG CAAACTAGAA AGTTTGGACC TAAGGCACTG CTATTTCTAT ATGTAAGAAT GCCCAATTCC CTTGCTGGGA 002560 002561 AAAGACCCAT TATGCAAATT AAATACTCAA GTAATTTATC CCCAGAGAAA CAACTATGGC TGCAGGTCCT GCTAAAGCAA 002640 002641 GCACTGCAAC TAAGATGTTA CTCACTTGCC TTAAGAAGAA ACAAGAATTC TCCCTCAGAA GTCTATGAGA GAGTGCGTAA 002720 002721 TTGTGAATAG GCAGAAGGAA TCCCAGGAAA AACAAGAAAT ATACAGTGAG TGCATATAGA AAAAATAGAA GGGGCTACTG 002800 002801 TGACCTGGGC GGCGGGGAGG AGGCGAATAA AAAAATCAGT ATACATTAAG AAAGGAAGCC TTAGAAGGAA TACAGCCTGT 002880 002881 CTTTCAAAAA TTTGAGAAGT GGACTGATTC ATCCTTGCAG ATCCCCATAT AATAGCCCTA TCGTGCCTGT AAGGAAGCTA 002960 002961 CACTTCTACA AATATCAATT TGCCCAAGAC CTGAGAACCG TTAATAAAAT AGTCTTGGAT ATTCACCCAG TGGTGCCTAA 003040 003041 CCCAGATACT CTACTGACTG CTATATATAG ACATTATGAA TGCTTTTCAG TGCTAGATCT GAAAGATGTT TTCTTCTGCA 003120 003121 TTCCAATTGA AGAAAAGACC CAACAATTAT CATTATTATT TTTAATGACA GGACCGAGAG ACTAAAACAA CCTTTCAATA 003200 003201 CTGTTAGACA GTGGGGTCTC AATGTGTTAA AAAATGCACC AACAATTTTT GGGGAAATAC TGGCAAAAGA CTTAGGAGAC 003280 003281 CTACAACAAG ATTAAGAAGC CTGGCTACAA CACATAGATA ATTAATAGCC AGCCACAACT ATAGGAAATG CTTAGCTGAT 003360 003361 GTCATTTTAG TTCTAAATCA CCTGGTACAA TATGGATACA AAGTATTCCC AAGAAGCCCC AAATATGTAA GTAGAAAGTA 003440 003441 ACCTGTCTTG GCTTTAGGTT AAAGCAAGGC CAAAGGAGCC TGGTCTGGTA AAAAAAAAAA ACAAAAAACA GGCAATAGCA 003520 003521 GCCATAAAGC TCCAGAGAAT GGGGGCAACC ATGGGGATTC TTAGAAAGGG TTAGCTTCTG CCAGATTTGA TTCCTAAGTT 003600 003601 TGGACTAATG ACTAAAACAC TTTATGAATC CTTAAAGGAT TCACTAGACT CAGAGGCCCT TCTCTGGACA TCTAAAGGTC 003680 003681 AACAAACATT TTATACCATC AAAGAAAAGC TGATATCACC CCCTGCACTG GGATACCAAA TTCCCAAAAG CTGTTCAAAC 003760 003761 TCTATATCCA AGAGAAACAA AGCATAGGTG TGGGTTGTGC TAATGCAAAT GCTGGGAGAT GCCCCACAAT CCATGGCCTA 003840 003841 TTTCTCTAAA CAATTACACC AAAGATTAAG GGATGGCTCC CCTTCCTCTG GGCAAGAGCA CCCACTGTGA AGTCCTACAG 003920 003921 GAAGTAGAAC AATTTACTCT GGGACAGCCA GTTACCTTGT TTGTACCCCA TCAGGTGCTG ACTCTGCTAG AACAAACGGG 004000 004001 AGGCTACTGG CTCACTGTGG GGTGAGTGGG CAGATACCAG GCCATCCTCT TATATGATCC AAATATCACC CTACAAACCA 004080 004081 CCATGGCTCT AAACCCTGCC ACACTGCTCT CAGCCACTGA ACACAATCCT GGGTTAAAGC ATGACTGTAA ATCCTTGATG 004160 004161 CAGCTTATTC AAGCATGCTG AACCTGTCAA ACTAGACAAT GAGTGCTCTG GACTTGAACT ACACTGATGG GAGCAGCTTA 004240 004241 ATGAAAGATG TGCACAGAGC CGGATGTGCC ACTGTGACTA CCAAAAGGGT AATAGTAGTC CATACCCTTC CTGCAGCTAC 004320 004321 CTCCGCACAA AGAGCTGAGT TAATTGCTCT TACCTGAGTC TTTAGAACTG TCCCAGGAAA TGGGAGTAAA GATTTATTCT 004400 004401 GATTCCATAT ATGCATTCCT GGAAATGCAC GCCAATTGGG TGATCTGGAA ACATAGAGGA GGTTGCTTGA AATCAGAAAA 004480 004481 TACAGACATT AAACACCCAA GAGAAATTCT GGACCTAGTA AAGGCAATTG CCTTGCCTGC CCAGGCTTCC ATCATGCACT 004560 004561 TCCCCAACAC CAGAGACATA ATTCACAACC GAAGGTAACC AGGCAGCTGG CAAAGCTGCA AAATGAGCTG CTTGGGAGGC 004640 004641 ACAGGTCCTG GGACATGAAT ACTCCATTTG GAATTACTAG ATTTTAAACC TCATTACACT GAACAAGATC CCAAACGTGC 004720 004721 CCAAGCCAGG GGTTTGAGAA AAGAGATTCC AATTCCCCTA GAAAACTGAC ACCTATAAGA TAACGCCTAC AGGATGATGA 004800 004801 AACCCCAAGG CCTTGGTTTA TCCAATCTCA AAACATCTAC ATAAAGGAAT GCACTATGGG AGTGATGTCC TCGCCAACCT 004880 004881 AGTACAACCA CACCTCAGTA GACCACACTT TCAAAACATC ACTCGGAAAA TTACACAGGG ATGCATCTTG TGCACTACAA 004960 004961 ACAAACAATC CCAAGATGGA ATGTAGTCCT CCTAAAAAGG AGATATAGTA CAAAGAGCTG AGTCCCTTCA AAGACTGAAA 005040 005041 GGCGGGCTTC ACTCAGATGC CTACCTGGTT ATGTGCGCCA AGGAAAGATC TGAAGTTATT AATAAAAGAA AAAGAAGGAG 005120 005121 ATATAAGC |
Predicted Small Protein
| Name | NONHSAT040875_smProtein_4379:4597 |
| Length | 73 |
| Molecular weight | 8368.661 |
| Aromaticity | 0.0833333333333 |
| Instability index | 51.7513888889 |
| Isoelectric point | 9.35809326172 |
| Runs | 11 |
| Runs residual | 0.0118613138686 |
| Runs probability | 0.03861347979 |
| Amino acid sequence | MGVKIYSDSIYAFLEMHANWVIWKHRGGCLKSENTDIKHPREILDLVKAIALPAQASIMH FPNTRDIIHNRR |
| Secondary structure | LLEEEELLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHLLLLLHHHHL LLLHHHHHHLLL |
| PRMN | - |
| PiMo | - |
