Difference between revisions of "NONHSAT041063"

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==References==
 
==References==
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[http://www.lncrnadb.org/ipw/ Annotation originally sourced from lncRNAdb.]
  
 
{{basic|
 
{{basic|

Latest revision as of 02:59, 26 August 2015

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Annotated Information

Name

IPW: Imprinted in Prader-Willi syndrome

Characteristics

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Function

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Expression

Ubiquitously expressed in humans. From part of Snurf-Snrpn domain that shows ubiquitous human expression (Vitali (2010)). Host transcript for multiple snoRNA genes. Mouse RNA stability was close to median for lncRNAs, with a half-life of 3.2 hr in N2A (neuroblastoma) cells (Clark (2012)).

Conservation

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Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

Annotation originally sourced from lncRNAdb.

Basic Information

Transcript ID

NONHSAT041063

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4498 nt

Genomic location

chr15+:25361692..25367623

Exon number

3

Exons

25361692..25362662,25363415..25363529,25364212..25367623

Genome context

Sequence
000001 CCAAATCATA GATCAAGATA TTTTATTTAT GTATGTCTTT TAAATGAAGA GTGGTTAGGA TAGTCCTGAT TATTGCACAT 000080
000081 AAATATTGCC TTTCACTAGA TTATTGTTTT GGGCCAAATT TTAGACTATT ATTTTAAAAA AGAGTACCTT AGTTTAATCC 000160
000161 AACCTTTCCA GATACTTAGA AATTATTGAA ATGTATATTT TGTGAAGATG GTCTTATGAA AGTTGTTGAG CTAGAAACAT 000240
000241 GTCCTTCACC AGTGGAATTC TTAGAAGCTT TCCTTGGGCT TCACTGGGTG CTAATAGACC ATGATCGTAT TGCTCTGTAT 000320
000321 ATAATGGTAC AAATTTTGTT TTATAACACT CAGTCTTAAT AGAATGGGAA TATTTTATCT TACTAACGTA GTCATTAGCT 000400
000401 GGCCACTCTC TGTGTCCATT GGACCTTATA GGGTAAAGGG AGGGCAGTGC GTATTTGAAG CCTGTGCACG TGACACACAA 000480
000481 AGGGCTTAGC AACCTCCGTG TTTTCCCAGC ACAGGATACC CATTCTTCCT GAATGTTTCA TTGTTAAATT AGATTGTGTG 000560
000561 TGTGTGTGTG TGTGTGTGTG TGTATTTTAT ATTAACATAC AGATGTATGT ATTTTAGTTG CATTTTTTTT CTTAAAATGT 000640
000641 TATTTTTTCT CTTTTTCTTT TATGTCAGGT GATGATAGAG CCCCTAGGGA AGCAAAACTG TCCATGCCCT TGCCTTAACT 000720
000721 TTCAGATACG ATAAAAACAA CATTTATAAA ATACCTGTCT TAGAAATATT AGCTAAAATT ATGTTGGGGA AAGTATGTTT 000800
000801 GAAAATAGAA TTGTAAGCTA CCACATTGTG ATAAATATTA CTAAATTTGT TTATTGACTT GTCAGGAAGC AAAAGAATGA 000880
000881 ATTAAAGAAA ACTCCAGAGA ATGAGCTGAC AACCTACTCC CTGGTCAGTG GCTCTCCATG CCTACCTGTG GTCTCTTGGA 000960
000961 CACCCTTGCA GAAGATGACT TCCTGGGAAC TCTTCTGGGA GTGAATGTTA TCAGCAAATT CCCAAAACAA CACCCCTTAG 001040
001041 ACAAAAAGCC TCCTCACCTA TGCATTGCCT AGACCACCCA CTAAAGGTGA TGGCCACAAA GAGGTGGATT TGTTGAGTTG 001120
001121 GTGCCATTCC TTCTACTGCC AGCTTCACCA AAACAATGAC ACAGTCTTCC TTCCGCATGG AGACTCTTCT CTTTCCTGTG 001200
001201 TTGCAGTGGA TGCCTCCTGC AGATAAGAAA TGCTTAACTG AGAAATGCTC ATGTTGGGAT ATCATCGATG AGACTTTAAT 001280
001281 TTGGGCATGG TGACTGTTTC CCTTGCTGCC ACTTGACTCA ATCCCAGGAG CCTCAGTAGA GGATATAATA TTACACAAGA 001360
001361 TGCTCAAAAT GGTGGAATTG CTCAGTGCTC CCATAAATAT ACATTTATAA TTTTCATTTG CCACATGGTA AACTGAAAAA 001440
001441 TACAGACTAT ATTAAAAAGA AACTGCATGA TTTTTTTTCA AAAATTCAAA GCATATTTAA ATAATATATA AATTAAATGC 001520
001521 CCTCCTCTCT TCCAATTCTG TCCCTATAGT TTTCCTCTAT TAAGTGAACT ACATGCATTC TTTTAGTGGA TAGATGCACA 001600
001601 CAAACACACA AGCCATTATG GGGAAGGATC CACGTGTGTG GCCATATTGT AACACATTTT TCTGCAAATC ACCTCTTTCA 001680
001681 TTTAACAGCC CTTATTCAAT GGCCTTTTTC TTTTTCAGTA GTACATACAC ATCTGTGTCA TTTGTTGAAT GACGACATGA 001760
001761 ATGTTTTGTA GATAAAATAT AATTAAATGT TTTAAGCATT TCTCACTCAT AGATATTTAT GTTAGCACCA AATTTCTGTG 001840
001841 CAATGAACCT CCCTATATAT CAGTAATTTT GCATTTGTCT ATAATATCAT AATAAATTAC TTATCAGTTG AATTACTGGG 001920
001921 ATTAAGTATG TGCACACTTT ATATTTATAT TTTGAAAATT ATTGCAAGAT TGCCTTCAAA AATGTGGTTA ACAACTTTAT 002000
002001 CTTCAAATGG CAATGAATGA GATTGCCAGC TTTCCTACAG CCTCACAGAC AATGGATTTT ATAAATATTT A