Difference between revisions of "CERNA2"
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==Annotated Information== | ==Annotated Information== | ||
| − | === | + | ===Name=== |
| − | CERNA2 | + | CERNA2:competing endogenous lncRNA 2 for microRNA let-7b |
| − | + | ||
| − | competing endogenous lncRNA 2 for microRNA let-7b | + | HOST2<ref name="ref1" /> |
| − | = | + | ===Characteristics=== |
| − | + | HOST2 is a novel member of the family of long non-coding mRNA-like genes, 2.9 kb in length, without an obvious open reading frame (ORF)<ref name="ref1" /> | |
| − | === | + | |
| − | HOST2 | + | ===Function=== |
| − | + | Specific and high-expression of HOST2 promotes EOC(epithelial ovarian cancer) cell migration, invasion and proliferation. | |
| − | + | HOST2 knockdown releases more let-7b, leading to heightened let-7bfunction, and the HOST2/let-7b axis contributes to regulating tumor cell growth and biological functions.<ref name="ref1" /> | |
| − | === | + | |
| − | + | ===Regulation=== | |
| − | = | + | Let-7b repressed HOST2 expression in EOC<ref name="ref1" /> |
| − | + | ||
| − | === | ||
| − | |||
| − | = | ||
| − | " | ||
===Disease=== | ===Disease=== | ||
| − | Ovarian cancer | + | Ovarian cancer<ref name="ref1" /> |
| + | |||
| + | Hepatocellular carcinoma | ||
| + | |||
| + | ===Expression=== | ||
| + | HOST2 is obviously upregulated in an EOC-derived cell line, OVCAR-3, compared with the other tested cell lines, including MKN28, Huh-7, HepG2, McF-7, DU145, A357, MG63, Hep-2, ARK2 and HeLa<ref name="ref1" /> | ||
| + | |||
| + | ===Sequence=== | ||
| + | >NR_134505.1 Homo sapiens competing endogenous lncRNA 2 for microRNA let-7b (CERNA2), long non-coding RNA | ||
| + | <dnaseq>CAGTAGCTTGCCGATGCTCCCAGCTGAATAAAGCCCTGCCTTCTACAACTCAGTGTCTGAGAGGTTTTGT | ||
| + | CTGCGGCTCACCCTGCTACATTTCTTGGTTCCCTGACTGGGAAACGAGGTGACTGACGGATGGCCGAGGC | ||
| + | AGCCCCTTAGGCGGCTTAGGCCTGCCCTGTGGAGCATCCGTGAGGGGAACTCCGGCCAGCCTGAGTGACG | ||
| + | TGATCCAAAGAGCGCTCCCGGGTAGGCAATTGCCCCAATGGAACGCCTTGCCAGAGCAGCGTGTAGCAGG | ||
| + | CCCCCACGGAAGATTAACACAGTGGCTGAACACCAGGAAGGAACTGGCACTTGGAGTCCGGACATCTACA | ||
| + | ACTTGGCCCAACCACCGAGACCACCCTTAAACATCAGTAGACTGGGAGCTGTACGTGGATGGGAGCAGCT | ||
| + | TTGCCAACCCTTGCAAAGTGACTCTGAAGAAGACGACAAGCCTTGTTCCGGTCACACCCGGAAGCTGACT | ||
| + | GGTTCACGCATGGCCGAAGCATGAGGAAACTCATCGCGGGAATAATTTTCCTTAAAATTTGGACTTGTAC | ||
| + | AGTAAGGACTTCAACTGACCTTATGCTAAGCTGCCTGATCAGTGGACAGGTAGCTGTGTAATTGGACAGG | ||
| + | TAGCTGTGTAATTGGCACCATTAAGCCATCTTTCTTCTTACTGCCAATAAAAACAGGTGAACTTCTAGGC | ||
| + | TTCCTAGTCTATGCTTCCCGTGAAAAATGAAGCATAGCCATAGGTGATTAGAAAATAATGAATGGCCCCC | ||
| + | TGAAAGAATCATACAATACTATAGACCCACCACTTAGGCACAAGATGGCTCATGAGGATATCGAACCCCC | ||
| + | ATCTACATGCTCAACCGAATCATACAGTTACAAGCGGTTTTAGAAATTATTACTAATAAAACCGGTCAAG | ||
| + | CCTTGACTGTTCTTGCCCGGCAAGAGACTCTGATGAGAAATTTTATCTATCAAAATATACTAGCTCTTGA | ||
| + | CTACTTGCTAGCAGCTGAAGGAGAAGTTTGTAAAAAATTTAACCTTACTAATTGTTGTCTACACATAAAT | ||
| + | GATTAAGGGCAAGTAGTTAAAAATATAGTTAAAGATATAACAAAACTGGCACATGTACCCATGCAAGTGT | ||
| + | GGCATGGGCTCAATCCGGGAGCCATGTTTGCAAATTGGTTCCCAGCAATGAAAAAATTTAAAACTCTTAT | ||
| + | AATAAGAGTAATAATAGTAATAGAAACCTGCTTACTGCTCCTTTGTCTGATACCTGTATTTCTCCAAATG | ||
| + | ATAAAAAACTTTGTCACGACCTTAGTTCACCAAAATGCTTTAGCAGAAGCATACTATATAAATCACTATC | ||
| + | AATCTATTGCACAAAAAGACATAAGTAGCAAAAATAAGACTCAGAACTCCCACTAATAAAAACTGAGAGT | ||
| + | CTCAAAGGGGGGAAATGAGGGAAGAGAGAGAGACCCTCTCATATTGTTTTATATTGTTTTATACTCAGTA | ||
| + | CCTCTTTTAAGAAAAAGTGACAAGGAAGTAAAACCAAAGACAGGCAGCCTGGTGCCAGGCCTGAAACCAG | ||
| + | GCCTGGGCCTGTCTGGCCTAAACCCAGTAGTTAAAAATCAACTCATAACTTAGAAACTGATGTTATTCAT | ||
| + | AGATTCCAGACATTGTATAGAAGAACATTGTGAAACTCCCTGCCCTGTTCTGTTTCTCTCTGACCACTGG | ||
| + | TGCATGCAGCCCCTGTCATGTACCGCCTGCTTGCTCAAATCAATCACGACCCTTTCATGTGAAATCTTTA | ||
| + | GTGTTGTGAGCCCTTAAAAGGGACAGAAATTGAGTATTTGGGGAGCTTGGATTTTAAGGCAGTAGCTTGC | ||
| + | TGATGCTCCCAGCTGAATAAAGCCCTTCCTTCCACAAAAAAAAAAAAAAAAAAAA</dnaseq> | ||
| + | |||
| + | |||
| + | ==Labs working on this lncRNA== | ||
| + | *Chinese PLA General Hospital, Beijing 100853, China Changhai Hospital of Second Military Medical University, Shanghai 200433, China.<ref name="ref1" /> | ||
| + | ==References== | ||
| + | <references> | ||
| + | <ref name="ref1"> | ||
| + | Gao Y, Meng H, Liu S, Hu J, Zhang Y, Jiao T, Liu Y, Ou J, Wang D, Yao L, Liu | ||
| + | S, Hui N. LncRNA-HOST2 regulates cell biological behaviors in epithelial ovarian | ||
| + | cancer through a mechanism involving microRNA let-7b. Hum Mol Genet. 2015 Feb | ||
| + | 1;24(3):841-52. | ||
| + | </ref> | ||
| + | </references> | ||
Revision as of 09:48, 26 July 2017
Contents
Annotated Information
Name
CERNA2:competing endogenous lncRNA 2 for microRNA let-7b
HOST2[1]
Characteristics
HOST2 is a novel member of the family of long non-coding mRNA-like genes, 2.9 kb in length, without an obvious open reading frame (ORF)[1]
Function
Specific and high-expression of HOST2 promotes EOC(epithelial ovarian cancer) cell migration, invasion and proliferation. HOST2 knockdown releases more let-7b, leading to heightened let-7bfunction, and the HOST2/let-7b axis contributes to regulating tumor cell growth and biological functions.[1]
Regulation
Let-7b repressed HOST2 expression in EOC[1]
Disease
Ovarian cancer[1]
Hepatocellular carcinoma
Expression
HOST2 is obviously upregulated in an EOC-derived cell line, OVCAR-3, compared with the other tested cell lines, including MKN28, Huh-7, HepG2, McF-7, DU145, A357, MG63, Hep-2, ARK2 and HeLa[1]
Sequence
>NR_134505.1 Homo sapiens competing endogenous lncRNA 2 for microRNA let-7b (CERNA2), long non-coding RNA
000001 CAGTAGCTTG CCGATGCTCC CAGCTGAATA AAGCCCTGCC TTCTACAACT CAGTGTCTGA GAGGTTTTGT CTGCGGCTCA 000080
000081 CCCTGCTACA TTTCTTGGTT CCCTGACTGG GAAACGAGGT GACTGACGGA TGGCCGAGGC AGCCCCTTAG GCGGCTTAGG 000160
000161 CCTGCCCTGT GGAGCATCCG TGAGGGGAAC TCCGGCCAGC CTGAGTGACG TGATCCAAAG AGCGCTCCCG GGTAGGCAAT 000240
000241 TGCCCCAATG GAACGCCTTG CCAGAGCAGC GTGTAGCAGG CCCCCACGGA AGATTAACAC AGTGGCTGAA CACCAGGAAG 000320
000321 GAACTGGCAC TTGGAGTCCG GACATCTACA ACTTGGCCCA ACCACCGAGA CCACCCTTAA ACATCAGTAG ACTGGGAGCT 000400
000401 GTACGTGGAT GGGAGCAGCT TTGCCAACCC TTGCAAAGTG ACTCTGAAGA AGACGACAAG CCTTGTTCCG GTCACACCCG 000480
000481 GAAGCTGACT GGTTCACGCA TGGCCGAAGC ATGAGGAAAC TCATCGCGGG AATAATTTTC CTTAAAATTT GGACTTGTAC 000560
000561 AGTAAGGACT TCAACTGACC TTATGCTAAG CTGCCTGATC AGTGGACAGG TAGCTGTGTA ATTGGACAGG TAGCTGTGTA 000640
000641 ATTGGCACCA TTAAGCCATC TTTCTTCTTA CTGCCAATAA AAACAGGTGA ACTTCTAGGC TTCCTAGTCT ATGCTTCCCG 000720
000721 TGAAAAATGA AGCATAGCCA TAGGTGATTA GAAAATAATG AATGGCCCCC TGAAAGAATC ATACAATACT ATAGACCCAC 000800
000801 CACTTAGGCA CAAGATGGCT CATGAGGATA TCGAACCCCC ATCTACATGC TCAACCGAAT CATACAGTTA CAAGCGGTTT 000880
000881 TAGAAATTAT TACTAATAAA ACCGGTCAAG CCTTGACTGT TCTTGCCCGG CAAGAGACTC TGATGAGAAA TTTTATCTAT 000960
000961 CAAAATATAC TAGCTCTTGA CTACTTGCTA GCAGCTGAAG GAGAAGTTTG TAAAAAATTT AACCTTACTA ATTGTTGTCT 001040
001041 ACACATAAAT GATTAAGGGC AAGTAGTTAA AAATATAGTT AAAGATATAA CAAAACTGGC ACATGTACCC ATGCAAGTGT 001120
001121 GGCATGGGCT CAATCCGGGA GCCATGTTTG CAAATTGGTT CCCAGCAATG AAAAAATTTA AAACTCTTAT AATAAGAGTA 001200
001201 ATAATAGTAA TAGAAACCTG CTTACTGCTC CTTTGTCTGA TACCTGTATT TCTCCAAATG ATAAAAAACT TTGTCACGAC 001280
001281 CTTAGTTCAC CAAAATGCTT TAGCAGAAGC ATACTATATA AATCACTATC AATCTATTGC ACAAAAAGAC ATAAGTAGCA 001360
001361 AAAATAAGAC TCAGAACTCC CACTAATAAA AACTGAGAGT CTCAAAGGGG GGAAATGAGG GAAGAGAGAG AGACCCTCTC 001440
001441 ATATTGTTTT ATATTGTTTT ATACTCAGTA CCTCTTTTAA GAAAAAGTGA CAAGGAAGTA AAACCAAAGA CAGGCAGCCT 001520
001521 GGTGCCAGGC CTGAAACCAG GCCTGGGCCT GTCTGGCCTA AACCCAGTAG TTAAAAATCA ACTCATAACT TAGAAACTGA 001600
001601 TGTTATTCAT AGATTCCAGA CATTGTATAG AAGAACATTG TGAAACTCCC TGCCCTGTTC TGTTTCTCTC TGACCACTGG 001680
001681 TGCATGCAGC CCCTGTCATG TACCGCCTGC TTGCTCAAAT CAATCACGAC CCTTTCATGT GAAATCTTTA GTGTTGTGAG 001760
001761 CCCTTAAAAG GGACAGAAAT TGAGTATTTG GGGAGCTTGG ATTTTAAGGC AGTAGCTTGC TGATGCTCCC AGCTGAATAA 001840
001841 AGCCCTTCCT TCCACAAAAA AAAAAAAAAA AAAAA
000081 CCCTGCTACA TTTCTTGGTT CCCTGACTGG GAAACGAGGT GACTGACGGA TGGCCGAGGC AGCCCCTTAG GCGGCTTAGG 000160
000161 CCTGCCCTGT GGAGCATCCG TGAGGGGAAC TCCGGCCAGC CTGAGTGACG TGATCCAAAG AGCGCTCCCG GGTAGGCAAT 000240
000241 TGCCCCAATG GAACGCCTTG CCAGAGCAGC GTGTAGCAGG CCCCCACGGA AGATTAACAC AGTGGCTGAA CACCAGGAAG 000320
000321 GAACTGGCAC TTGGAGTCCG GACATCTACA ACTTGGCCCA ACCACCGAGA CCACCCTTAA ACATCAGTAG ACTGGGAGCT 000400
000401 GTACGTGGAT GGGAGCAGCT TTGCCAACCC TTGCAAAGTG ACTCTGAAGA AGACGACAAG CCTTGTTCCG GTCACACCCG 000480
000481 GAAGCTGACT GGTTCACGCA TGGCCGAAGC ATGAGGAAAC TCATCGCGGG AATAATTTTC CTTAAAATTT GGACTTGTAC 000560
000561 AGTAAGGACT TCAACTGACC TTATGCTAAG CTGCCTGATC AGTGGACAGG TAGCTGTGTA ATTGGACAGG TAGCTGTGTA 000640
000641 ATTGGCACCA TTAAGCCATC TTTCTTCTTA CTGCCAATAA AAACAGGTGA ACTTCTAGGC TTCCTAGTCT ATGCTTCCCG 000720
000721 TGAAAAATGA AGCATAGCCA TAGGTGATTA GAAAATAATG AATGGCCCCC TGAAAGAATC ATACAATACT ATAGACCCAC 000800
000801 CACTTAGGCA CAAGATGGCT CATGAGGATA TCGAACCCCC ATCTACATGC TCAACCGAAT CATACAGTTA CAAGCGGTTT 000880
000881 TAGAAATTAT TACTAATAAA ACCGGTCAAG CCTTGACTGT TCTTGCCCGG CAAGAGACTC TGATGAGAAA TTTTATCTAT 000960
000961 CAAAATATAC TAGCTCTTGA CTACTTGCTA GCAGCTGAAG GAGAAGTTTG TAAAAAATTT AACCTTACTA ATTGTTGTCT 001040
001041 ACACATAAAT GATTAAGGGC AAGTAGTTAA AAATATAGTT AAAGATATAA CAAAACTGGC ACATGTACCC ATGCAAGTGT 001120
001121 GGCATGGGCT CAATCCGGGA GCCATGTTTG CAAATTGGTT CCCAGCAATG AAAAAATTTA AAACTCTTAT AATAAGAGTA 001200
001201 ATAATAGTAA TAGAAACCTG CTTACTGCTC CTTTGTCTGA TACCTGTATT TCTCCAAATG ATAAAAAACT TTGTCACGAC 001280
001281 CTTAGTTCAC CAAAATGCTT TAGCAGAAGC ATACTATATA AATCACTATC AATCTATTGC ACAAAAAGAC ATAAGTAGCA 001360
001361 AAAATAAGAC TCAGAACTCC CACTAATAAA AACTGAGAGT CTCAAAGGGG GGAAATGAGG GAAGAGAGAG AGACCCTCTC 001440
001441 ATATTGTTTT ATATTGTTTT ATACTCAGTA CCTCTTTTAA GAAAAAGTGA CAAGGAAGTA AAACCAAAGA CAGGCAGCCT 001520
001521 GGTGCCAGGC CTGAAACCAG GCCTGGGCCT GTCTGGCCTA AACCCAGTAG TTAAAAATCA ACTCATAACT TAGAAACTGA 001600
001601 TGTTATTCAT AGATTCCAGA CATTGTATAG AAGAACATTG TGAAACTCCC TGCCCTGTTC TGTTTCTCTC TGACCACTGG 001680
001681 TGCATGCAGC CCCTGTCATG TACCGCCTGC TTGCTCAAAT CAATCACGAC CCTTTCATGT GAAATCTTTA GTGTTGTGAG 001760
001761 CCCTTAAAAG GGACAGAAAT TGAGTATTTG GGGAGCTTGG ATTTTAAGGC AGTAGCTTGC TGATGCTCCC AGCTGAATAA 001840
001841 AGCCCTTCCT TCCACAAAAA AAAAAAAAAA AAAAA
Labs working on this lncRNA
- Chinese PLA General Hospital, Beijing 100853, China Changhai Hospital of Second Military Medical University, Shanghai 200433, China.[1]
