Difference between revisions of "LINC00578"
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==Annotated Information== | ==Annotated Information== | ||
| − | === | + | ===Name=== |
| − | LINC00578 | + | LINC00578:long intergenic non-protein coding RNA 578 |
| − | + | ||
| − | long intergenic non-protein coding RNA 578 | + | ===Characteristics=== |
| − | === | + | In previous GWA studies, a total of 16 SNPs are examined as intergenic MDD(Major depression disorder)-associated loci, the rs644695 is present in LncRNA LINC00578.<ref name="ref1" /> |
| − | + | ||
| − | + | ===Expression=== | |
| − | + | ||
| − | === | + | The expression of LINC00578 shows no difference between the patient group and the control group.<ref name="ref1" /> |
| − | + | ===Diseases=== | |
| − | === | + | Major depression disorder<ref name="ref1" /> |
| − | + | ===Sequence=== | |
| − | === | + | >NR_047568.1 Homo sapiens long intergenic non-protein coding RNA 578 (LINC00578), long non-coding RNA |
| − | + | <dnaseq>CGGTGTAGCACGATGGAATCTGGTGGCTTAAACCTAGCTGTCCACATTTCACTATCTGAAGAGCAGAAAA | |
| − | + | TGTGTTAATAGGAGCCTGGTGAGTGGAGGAGACTGAAGATGGAGAGAGAGCCTGGACCTCAACATGAGCA | |
| − | + | TCTGGAGCCATTTGGCAGCATTAGGCTGTGACCGCTTAGAGAACCGAAAGGTGCAGAGCTTTAAAGGATT | |
| − | == | + | ATGGAGTCTGAAGACCAAATGGGATGATGGAGAACAGCTATTCAGTGGTACAAATGTAAATGCTCCCAGG |
| − | + | CCCGGGCAGAAAAGAGAAAACATTTCCATGGAAGAGGAAACAGGAAATTCCAACAGATCAGCAACAGTTG | |
| − | == | + | GAGTGCTAACCTGTCACTGGAATGGGAAAAAAAATGCTGTCGTTGACACATCTTTTCCTTGTTTTTGACA |
| − | major | + | CAAATTAGAAACACCACCTGGAACACAGCTGTGACTTGATAAACAAGTGAAACATTCTTTGGTGTGGTGA |
| + | GGGGAAAACAAATTTCTCAAAGGACACGCACCATGGTGTATGAGAGGACACTGGAGCCCAGCCAGCATCT | ||
| + | GACATGCTGAATTCAAAGTGCAGGTGAAAGTAGGACAACTGATTCACAAGCTGGGATGCCTGTGTTGTTG | ||
| + | TTTGCCAGTGTGCGTGTGTGTGTTTTCCTGGCACCCTTCATTCATTCCCCAGCACAGTTGACATCAGGTT | ||
| + | GGAAGCAGTGAGTTCTGAGGGAGACTGCTAGAGGACCCAACTTGGAGAATCAACGATCTGCGATGAAGAT | ||
| + | AATGAAGATAAAGACAATGTCAATGTCAGCGTCCAAAATCATAAGGACCCTTTAAGAAGCTTCCAGAGCA | ||
| + | GAAGTGACTGTGCAAGAAGGGCCAATAAAGTCTAGGCAATGCACGACCAGGCGCGGTCGCTCACGCCTGT | ||
| + | AATCCCAGCACTTTGGGAGGCCGAGGTGGTTGGATTACCTGAGGTTAGGAGTTTGAGACCAGCCTGACCA | ||
| + | ACATAGTTTCACCCCATCTCTACTAAAAAAAAAAAAAAAAACAAAACAAAAGTTAGCCAGGTGTGGTGCT | ||
| + | GCACACCTGTAATCCCAGCTACTCTGGAAGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTG | ||
| + | GCAGTGAGCTGAGATTGCACCGCTGCACTCCAGCCTGGGCGACAGAGTGAGACTCTGTCTCAAAAATAAA | ||
| + | TAAATAAATAAATAATAAAGTCTAGGCAATGC | ||
| + | </dnaseq> | ||
| + | |||
| + | ==Labs working on this lncRNA== | ||
| + | *State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences & Neuroscience Center, Chinese Academy of Medical Sciences & Peking Union Medical College, Tsinghua University, China. | ||
| + | ==References== | ||
| + | <references> | ||
| + | <ref name="ref1"> | ||
| + | Ye N, Rao S, Du T, Hu H, Liu Z, Shen Y, Xu Q. Intergenic variants may | ||
| + | predispose to major depression disorder through regulation of long non-coding RNA | ||
| + | expression. Gene. 2017 Feb 15;601:21-26. | ||
| + | </ref> | ||
| + | </references> | ||
Revision as of 09:07, 19 November 2017
Contents
Annotated Information
Name
LINC00578:long intergenic non-protein coding RNA 578
Characteristics
In previous GWA studies, a total of 16 SNPs are examined as intergenic MDD(Major depression disorder)-associated loci, the rs644695 is present in LncRNA LINC00578.[1]
Expression
The expression of LINC00578 shows no difference between the patient group and the control group.[1]
Diseases
Major depression disorder[1]
Sequence
>NR_047568.1 Homo sapiens long intergenic non-protein coding RNA 578 (LINC00578), long non-coding RNA
000001 CGGTGTAGCA CGATGGAATC TGGTGGCTTA AACCTAGCTG TCCACATTTC ACTATCTGAA GAGCAGAAAA TGTGTTAATA 000080
000081 GGAGCCTGGT GAGTGGAGGA GACTGAAGAT GGAGAGAGAG CCTGGACCTC AACATGAGCA TCTGGAGCCA TTTGGCAGCA 000160
000161 TTAGGCTGTG ACCGCTTAGA GAACCGAAAG GTGCAGAGCT TTAAAGGATT ATGGAGTCTG AAGACCAAAT GGGATGATGG 000240
000241 AGAACAGCTA TTCAGTGGTA CAAATGTAAA TGCTCCCAGG CCCGGGCAGA AAAGAGAAAA CATTTCCATG GAAGAGGAAA 000320
000321 CAGGAAATTC CAACAGATCA GCAACAGTTG GAGTGCTAAC CTGTCACTGG AATGGGAAAA AAAATGCTGT CGTTGACACA 000400
000401 TCTTTTCCTT GTTTTTGACA CAAATTAGAA ACACCACCTG GAACACAGCT GTGACTTGAT AAACAAGTGA AACATTCTTT 000480
000481 GGTGTGGTGA GGGGAAAACA AATTTCTCAA AGGACACGCA CCATGGTGTA TGAGAGGACA CTGGAGCCCA GCCAGCATCT 000560
000561 GACATGCTGA ATTCAAAGTG CAGGTGAAAG TAGGACAACT GATTCACAAG CTGGGATGCC TGTGTTGTTG TTTGCCAGTG 000640
000641 TGCGTGTGTG TGTTTTCCTG GCACCCTTCA TTCATTCCCC AGCACAGTTG ACATCAGGTT GGAAGCAGTG AGTTCTGAGG 000720
000721 GAGACTGCTA GAGGACCCAA CTTGGAGAAT CAACGATCTG CGATGAAGAT AATGAAGATA AAGACAATGT CAATGTCAGC 000800
000801 GTCCAAAATC ATAAGGACCC TTTAAGAAGC TTCCAGAGCA GAAGTGACTG TGCAAGAAGG GCCAATAAAG TCTAGGCAAT 000880
000881 GCACGACCAG GCGCGGTCGC TCACGCCTGT AATCCCAGCA CTTTGGGAGG CCGAGGTGGT TGGATTACCT GAGGTTAGGA 000960
000961 GTTTGAGACC AGCCTGACCA ACATAGTTTC ACCCCATCTC TACTAAAAAA AAAAAAAAAA ACAAAACAAA AGTTAGCCAG 001040
001041 GTGTGGTGCT GCACACCTGT AATCCCAGCT ACTCTGGAAG CTGAGGCAGG AGAATCGCTT GAACCCAGGA GGCGGAGGTG 001120
001121 GCAGTGAGCT GAGATTGCAC CGCTGCACTC CAGCCTGGGC GACAGAGTGA GACTCTGTCT CAAAAATAAA TAAATAAATA 001200
001201 AATAATAAAG TCTAGGCAAT GC
000081 GGAGCCTGGT GAGTGGAGGA GACTGAAGAT GGAGAGAGAG CCTGGACCTC AACATGAGCA TCTGGAGCCA TTTGGCAGCA 000160
000161 TTAGGCTGTG ACCGCTTAGA GAACCGAAAG GTGCAGAGCT TTAAAGGATT ATGGAGTCTG AAGACCAAAT GGGATGATGG 000240
000241 AGAACAGCTA TTCAGTGGTA CAAATGTAAA TGCTCCCAGG CCCGGGCAGA AAAGAGAAAA CATTTCCATG GAAGAGGAAA 000320
000321 CAGGAAATTC CAACAGATCA GCAACAGTTG GAGTGCTAAC CTGTCACTGG AATGGGAAAA AAAATGCTGT CGTTGACACA 000400
000401 TCTTTTCCTT GTTTTTGACA CAAATTAGAA ACACCACCTG GAACACAGCT GTGACTTGAT AAACAAGTGA AACATTCTTT 000480
000481 GGTGTGGTGA GGGGAAAACA AATTTCTCAA AGGACACGCA CCATGGTGTA TGAGAGGACA CTGGAGCCCA GCCAGCATCT 000560
000561 GACATGCTGA ATTCAAAGTG CAGGTGAAAG TAGGACAACT GATTCACAAG CTGGGATGCC TGTGTTGTTG TTTGCCAGTG 000640
000641 TGCGTGTGTG TGTTTTCCTG GCACCCTTCA TTCATTCCCC AGCACAGTTG ACATCAGGTT GGAAGCAGTG AGTTCTGAGG 000720
000721 GAGACTGCTA GAGGACCCAA CTTGGAGAAT CAACGATCTG CGATGAAGAT AATGAAGATA AAGACAATGT CAATGTCAGC 000800
000801 GTCCAAAATC ATAAGGACCC TTTAAGAAGC TTCCAGAGCA GAAGTGACTG TGCAAGAAGG GCCAATAAAG TCTAGGCAAT 000880
000881 GCACGACCAG GCGCGGTCGC TCACGCCTGT AATCCCAGCA CTTTGGGAGG CCGAGGTGGT TGGATTACCT GAGGTTAGGA 000960
000961 GTTTGAGACC AGCCTGACCA ACATAGTTTC ACCCCATCTC TACTAAAAAA AAAAAAAAAA ACAAAACAAA AGTTAGCCAG 001040
001041 GTGTGGTGCT GCACACCTGT AATCCCAGCT ACTCTGGAAG CTGAGGCAGG AGAATCGCTT GAACCCAGGA GGCGGAGGTG 001120
001121 GCAGTGAGCT GAGATTGCAC CGCTGCACTC CAGCCTGGGC GACAGAGTGA GACTCTGTCT CAAAAATAAA TAAATAAATA 001200
001201 AATAATAAAG TCTAGGCAAT GC
Labs working on this lncRNA
- State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences & Neuroscience Center, Chinese Academy of Medical Sciences & Peking Union Medical College, Tsinghua University, China.
