Difference between revisions of "PEG3-AS1"
(Created page with "==Annotated Information== ===Approved Symbol=== PEG3-AS1 ===Approved Name=== PEG3 antisense RNA 1 ===Previous Symbols=== PEG3AS, PEG3-AS ===Synonyms=== APEG3, NCRNA00155 ===Ch...") |
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==Annotated Information== | ==Annotated Information== | ||
===Approved Symbol=== | ===Approved Symbol=== | ||
| − | PEG3-AS1 | + | PEG3-AS1 (PEG3 antisense RNA 1) |
| − | |||
| − | PEG3 antisense RNA 1 | ||
===Previous Symbols=== | ===Previous Symbols=== | ||
PEG3AS, PEG3-AS | PEG3AS, PEG3-AS | ||
===Synonyms=== | ===Synonyms=== | ||
APEG3, NCRNA00155 | APEG3, NCRNA00155 | ||
| + | [[File:Genomic structures of PEG3 and APEG3 in mouse, human and cow.jpg|right|thumb|400px|'''Genomic structures of PEG3 and APEG3 in mouse, human and cow'''<ref name="ref1" />]] | ||
===Chromosome=== | ===Chromosome=== | ||
19q13.43 | 19q13.43 | ||
===RefSeq ID=== | ===RefSeq ID=== | ||
NR_023847 | NR_023847 | ||
| − | |||
| − | |||
| − | |||
| − | |||
===pubmed IDs=== | ===pubmed IDs=== | ||
18166281, 15950772, 24582979 | 18166281, 15950772, 24582979 | ||
| + | |||
| + | ===Characteristics=== | ||
| + | APeg3 is an antisense transcript gene of Peg3.<ref name="ref1" /> | ||
| + | |||
| + | ===Expression=== | ||
| + | PEG3-AS1 displayd paternal allele-specific expression.<ref name="ref1" /> | ||
| + | {| class='wikitable' style="text-align:center" | ||
| + | |- | ||
| + | ! | Experiment | ||
| + | ! | Forward primer | ||
| + | ! | Reverse primer | ||
| + | |- | ||
| + | | rowspan="1"|RT PCR | ||
| + | | | 5'-CTATCATGCCTACAGCTTCAC-3' | ||
| + | | | 5'-CTGCAGAGGTACCTTACCTGGT-3' <ref name="ref1" /> | ||
| + | |} | ||
| + | |||
| + | ==Labs working on this lncRNA== | ||
| + | * Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA. <ref name="ref1" /> | ||
| + | |||
| + | ==References== | ||
| + | <references> | ||
| + | <ref name="ref1"> 1: Choo JH, Kim JD, Kim J. Imprinting of an evolutionarily conserved antisense transcript gene APeg3. Gene. 2008 Feb 15;409(1-2):28-33. doi:10.1016/j.gene.2007.10.036. Epub 2007 Nov 21. PubMed PMID: 18166281; PubMed Central PMCID: PMC2259222. | ||
| + | </ref>(1) | ||
| + | </references> | ||
| + | |||
===Sequence=== | ===Sequence=== | ||
>gi|260166653|ref|NR_023847.2| Homo sapiens PEG3 antisense RNA 1 (PEG3-AS1), antisense RNA | >gi|260166653|ref|NR_023847.2| Homo sapiens PEG3 antisense RNA 1 (PEG3-AS1), antisense RNA | ||
<dnaseq>ATTAAGTTAGCGATAGAAAGATCTAAGGATACTAGCTCCTGGGCACCTAGGGTGCAAACTGACTTGTGGCAGCATAAGCTGATGCTGCACAGGGGACCCAAGCCATGTTGCTACTTGTCACTTAAGGCAGGAAGCGCACAAAGGAAGTGATGAAAGGTTATTAGCCTGCAACATTATTTACAGCATGAGAGCCTCTCCTACGGTTCTCAACCTTCATTAGGCACTACTGTGATCTAGTGATGGTTGTAACCCATTCTTTAAAGGCAAAGATGTAAGATTTACAGGGAAAAGCTTCGGGTTTTATCAATTCACTATCATCAAACACATATTGAGTTGGTTAAAAAAAAAAAAAACCCAGAACACAAATGTGTAATATTTTTGCATGAGAACCACTTCAACAAACATAACATGTGGCAACCAATCAATCTGGGTCACAAAAAGCCAATCCGTATATTGTAAAGCCTTACACAGTATTAGGTTCCAAAGTGTTGGCGCAGATGAAATGGCTGCAGAAAGAAGCTAAAGTACTTATCTTTTCAAACAGTAAGGAGTAAAAGCCATGTTATCTATCATGCCTACAGCTTCACAAGACTATTTAAGGGTAAGAAACAAAACAATTACTCAAAAAGATATTGACAGGGTTCAAATAATGCACAATAAATCTTTCTCAGGATCTAAGACACTTAAAAATATAATCAAATTTGTTGCTCTCTTCCTCCTCCAAAAAAAAAAAAAATTCAAAGAATACCAGGTAAGGTACCTCTGCAGAGTAAACTGTAACTGTATATCATATAAATCCAAATATATGTGATCACTGTTCTGTCATAATTTGCTATTTTATATACACCTCATGAAACACTATATATACGTTACACAAGTGTCATTTACAGTTGATTTGGGCAAACTCTGTAGTCTGGAATACTCATAGGGTTTTCTCAATCTGATTACTTGGAAAGGTAAGATGTGTGCTATGGCTTTCCCACATGCAGACACTGACATCTGAAGGGGAAAGCTTAAGACTGTGGAATCTGCACATTCGGTCTCTTTTCAATCTGAGTTTAGAGATGTTAAGTCAGGTGTGTAACACACTAAGGTTAAGTCTCCTACTGACATTATCATGGATTGGTTTGGATTCTCTGTGGTTTGGTAAGGGTCAAGTCCTAGGTGAAGGTTTTCTAACCTTTACCCCATGCCCTCAGCCAGTGTGGGTATTCTGGTGTCTGGCGAGGGACAGGCGGTCATTGAAGAGCTGCCCACAGACGTCACATTTGAAGTACTTCTCATCAGCTTGATTGGCACCACCTGTGCTGGTGC</dnaseq> | <dnaseq>ATTAAGTTAGCGATAGAAAGATCTAAGGATACTAGCTCCTGGGCACCTAGGGTGCAAACTGACTTGTGGCAGCATAAGCTGATGCTGCACAGGGGACCCAAGCCATGTTGCTACTTGTCACTTAAGGCAGGAAGCGCACAAAGGAAGTGATGAAAGGTTATTAGCCTGCAACATTATTTACAGCATGAGAGCCTCTCCTACGGTTCTCAACCTTCATTAGGCACTACTGTGATCTAGTGATGGTTGTAACCCATTCTTTAAAGGCAAAGATGTAAGATTTACAGGGAAAAGCTTCGGGTTTTATCAATTCACTATCATCAAACACATATTGAGTTGGTTAAAAAAAAAAAAAACCCAGAACACAAATGTGTAATATTTTTGCATGAGAACCACTTCAACAAACATAACATGTGGCAACCAATCAATCTGGGTCACAAAAAGCCAATCCGTATATTGTAAAGCCTTACACAGTATTAGGTTCCAAAGTGTTGGCGCAGATGAAATGGCTGCAGAAAGAAGCTAAAGTACTTATCTTTTCAAACAGTAAGGAGTAAAAGCCATGTTATCTATCATGCCTACAGCTTCACAAGACTATTTAAGGGTAAGAAACAAAACAATTACTCAAAAAGATATTGACAGGGTTCAAATAATGCACAATAAATCTTTCTCAGGATCTAAGACACTTAAAAATATAATCAAATTTGTTGCTCTCTTCCTCCTCCAAAAAAAAAAAAAATTCAAAGAATACCAGGTAAGGTACCTCTGCAGAGTAAACTGTAACTGTATATCATATAAATCCAAATATATGTGATCACTGTTCTGTCATAATTTGCTATTTTATATACACCTCATGAAACACTATATATACGTTACACAAGTGTCATTTACAGTTGATTTGGGCAAACTCTGTAGTCTGGAATACTCATAGGGTTTTCTCAATCTGATTACTTGGAAAGGTAAGATGTGTGCTATGGCTTTCCCACATGCAGACACTGACATCTGAAGGGGAAAGCTTAAGACTGTGGAATCTGCACATTCGGTCTCTTTTCAATCTGAGTTTAGAGATGTTAAGTCAGGTGTGTAACACACTAAGGTTAAGTCTCCTACTGACATTATCATGGATTGGTTTGGATTCTCTGTGGTTTGGTAAGGGTCAAGTCCTAGGTGAAGGTTTTCTAACCTTTACCCCATGCCCTCAGCCAGTGTGGGTATTCTGGTGTCTGGCGAGGGACAGGCGGTCATTGAAGAGCTGCCCACAGACGTCACATTTGAAGTACTTCTCATCAGCTTGATTGGCACCACCTGTGCTGGTGC</dnaseq> | ||
Revision as of 13:51, 13 January 2018
Contents
Annotated Information
Approved Symbol
PEG3-AS1 (PEG3 antisense RNA 1)
Previous Symbols
PEG3AS, PEG3-AS
Synonyms
APEG3, NCRNA00155
Genomic structures of PEG3 and APEG3 in mouse, human and cow[1]
Chromosome
19q13.43
RefSeq ID
NR_023847
pubmed IDs
18166281, 15950772, 24582979
Characteristics
APeg3 is an antisense transcript gene of Peg3.[1]
Expression
PEG3-AS1 displayd paternal allele-specific expression.[1]
| Experiment | Forward primer | Reverse primer |
|---|---|---|
| RT PCR | 5'-CTATCATGCCTACAGCTTCAC-3' | 5'-CTGCAGAGGTACCTTACCTGGT-3' [1] |
Labs working on this lncRNA
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA. [1]
References
Sequence
>gi|260166653|ref|NR_023847.2| Homo sapiens PEG3 antisense RNA 1 (PEG3-AS1), antisense RNA
000001 ATTAAGTTAG CGATAGAAAG ATCTAAGGAT ACTAGCTCCT GGGCACCTAG GGTGCAAACT GACTTGTGGC AGCATAAGCT 000080
000081 GATGCTGCAC AGGGGACCCA AGCCATGTTG CTACTTGTCA CTTAAGGCAG GAAGCGCACA AAGGAAGTGA TGAAAGGTTA 000160
000161 TTAGCCTGCA ACATTATTTA CAGCATGAGA GCCTCTCCTA CGGTTCTCAA CCTTCATTAG GCACTACTGT GATCTAGTGA 000240
000241 TGGTTGTAAC CCATTCTTTA AAGGCAAAGA TGTAAGATTT ACAGGGAAAA GCTTCGGGTT TTATCAATTC ACTATCATCA 000320
000321 AACACATATT GAGTTGGTTA AAAAAAAAAA AAACCCAGAA CACAAATGTG TAATATTTTT GCATGAGAAC CACTTCAACA 000400
000401 AACATAACAT GTGGCAACCA ATCAATCTGG GTCACAAAAA GCCAATCCGT ATATTGTAAA GCCTTACACA GTATTAGGTT 000480
000481 CCAAAGTGTT GGCGCAGATG AAATGGCTGC AGAAAGAAGC TAAAGTACTT ATCTTTTCAA ACAGTAAGGA GTAAAAGCCA 000560
000561 TGTTATCTAT CATGCCTACA GCTTCACAAG ACTATTTAAG GGTAAGAAAC AAAACAATTA CTCAAAAAGA TATTGACAGG 000640
000641 GTTCAAATAA TGCACAATAA ATCTTTCTCA GGATCTAAGA CACTTAAAAA TATAATCAAA TTTGTTGCTC TCTTCCTCCT 000720
000721 CCAAAAAAAA AAAAAATTCA AAGAATACCA GGTAAGGTAC CTCTGCAGAG TAAACTGTAA CTGTATATCA TATAAATCCA 000800
000801 AATATATGTG ATCACTGTTC TGTCATAATT TGCTATTTTA TATACACCTC ATGAAACACT ATATATACGT TACACAAGTG 000880
000881 TCATTTACAG TTGATTTGGG CAAACTCTGT AGTCTGGAAT ACTCATAGGG TTTTCTCAAT CTGATTACTT GGAAAGGTAA 000960
000961 GATGTGTGCT ATGGCTTTCC CACATGCAGA CACTGACATC TGAAGGGGAA AGCTTAAGAC TGTGGAATCT GCACATTCGG 001040
001041 TCTCTTTTCA ATCTGAGTTT AGAGATGTTA AGTCAGGTGT GTAACACACT AAGGTTAAGT CTCCTACTGA CATTATCATG 001120
001121 GATTGGTTTG GATTCTCTGT GGTTTGGTAA GGGTCAAGTC CTAGGTGAAG GTTTTCTAAC CTTTACCCCA TGCCCTCAGC 001200
001201 CAGTGTGGGT ATTCTGGTGT CTGGCGAGGG ACAGGCGGTC ATTGAAGAGC TGCCCACAGA CGTCACATTT GAAGTACTTC 001280
001281 TCATCAGCTT GATTGGCACC ACCTGTGCTG GTGC
000081 GATGCTGCAC AGGGGACCCA AGCCATGTTG CTACTTGTCA CTTAAGGCAG GAAGCGCACA AAGGAAGTGA TGAAAGGTTA 000160
000161 TTAGCCTGCA ACATTATTTA CAGCATGAGA GCCTCTCCTA CGGTTCTCAA CCTTCATTAG GCACTACTGT GATCTAGTGA 000240
000241 TGGTTGTAAC CCATTCTTTA AAGGCAAAGA TGTAAGATTT ACAGGGAAAA GCTTCGGGTT TTATCAATTC ACTATCATCA 000320
000321 AACACATATT GAGTTGGTTA AAAAAAAAAA AAACCCAGAA CACAAATGTG TAATATTTTT GCATGAGAAC CACTTCAACA 000400
000401 AACATAACAT GTGGCAACCA ATCAATCTGG GTCACAAAAA GCCAATCCGT ATATTGTAAA GCCTTACACA GTATTAGGTT 000480
000481 CCAAAGTGTT GGCGCAGATG AAATGGCTGC AGAAAGAAGC TAAAGTACTT ATCTTTTCAA ACAGTAAGGA GTAAAAGCCA 000560
000561 TGTTATCTAT CATGCCTACA GCTTCACAAG ACTATTTAAG GGTAAGAAAC AAAACAATTA CTCAAAAAGA TATTGACAGG 000640
000641 GTTCAAATAA TGCACAATAA ATCTTTCTCA GGATCTAAGA CACTTAAAAA TATAATCAAA TTTGTTGCTC TCTTCCTCCT 000720
000721 CCAAAAAAAA AAAAAATTCA AAGAATACCA GGTAAGGTAC CTCTGCAGAG TAAACTGTAA CTGTATATCA TATAAATCCA 000800
000801 AATATATGTG ATCACTGTTC TGTCATAATT TGCTATTTTA TATACACCTC ATGAAACACT ATATATACGT TACACAAGTG 000880
000881 TCATTTACAG TTGATTTGGG CAAACTCTGT AGTCTGGAAT ACTCATAGGG TTTTCTCAAT CTGATTACTT GGAAAGGTAA 000960
000961 GATGTGTGCT ATGGCTTTCC CACATGCAGA CACTGACATC TGAAGGGGAA AGCTTAAGAC TGTGGAATCT GCACATTCGG 001040
001041 TCTCTTTTCA ATCTGAGTTT AGAGATGTTA AGTCAGGTGT GTAACACACT AAGGTTAAGT CTCCTACTGA CATTATCATG 001120
001121 GATTGGTTTG GATTCTCTGT GGTTTGGTAA GGGTCAAGTC CTAGGTGAAG GTTTTCTAAC CTTTACCCCA TGCCCTCAGC 001200
001201 CAGTGTGGGT ATTCTGGTGT CTGGCGAGGG ACAGGCGGTC ATTGAAGAGC TGCCCACAGA CGTCACATTT GAAGTACTTC 001280
001281 TCATCAGCTT GATTGGCACC ACCTGTGCTG GTGC
