Difference between revisions of "PEG3-AS1"
| Line 1: | Line 1: | ||
==Annotated Information== | ==Annotated Information== | ||
===Approved Symbol=== | ===Approved Symbol=== | ||
| + | [[File:Genomic structures of PEG3 and APEG3 in mouse, human and cow.jpg|right|thumb|400px|'''Genomic structures of PEG3 and APEG3 in mouse, human and cow'''<ref name="ref1" />]] | ||
| + | [[File:Peg3 (A) and APeg3 (B) expression level.png|right|thumb|400px|'''Peg3 (A) and APeg3 (B) expression level'''<ref name="ref2" />]] | ||
PEG3-AS1 (PEG3 antisense RNA 1) | PEG3-AS1 (PEG3 antisense RNA 1) | ||
===Previous Symbols=== | ===Previous Symbols=== | ||
PEG3AS, PEG3-AS,APEG3, NCRNA00155 | PEG3AS, PEG3-AS,APEG3, NCRNA00155 | ||
| − | |||
===Chromosome=== | ===Chromosome=== | ||
19q13.43 | 19q13.43 | ||
| Line 13: | Line 14: | ||
===Characteristics=== | ===Characteristics=== | ||
| − | APeg3 is | + | APeg3 is transcribed in the antisense direction to the 3′ untranslated region of the Peg3 gene.<ref name="ref1" /> <ref name="ref2" /> |
===Expression=== | ===Expression=== | ||
PEG3-AS1 displayd paternal allele-specific expression.<ref name="ref1" /> | PEG3-AS1 displayd paternal allele-specific expression.<ref name="ref1" /> | ||
| + | PEG3-AS1 is specifically expressed in vasopressinergic magnocellular neurons.<ref name="ref2" /> | ||
{| class='wikitable' style="text-align:center" | {| class='wikitable' style="text-align:center" | ||
|- | |- | ||
| Line 30: | Line 32: | ||
==Labs working on this lncRNA== | ==Labs working on this lncRNA== | ||
* Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA. <ref name="ref1" /> | * Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA. <ref name="ref1" /> | ||
| + | * Department of Neurobiology, Northeastern Ohio Universities College of Medicine, Rootstown, OH 44272, USA. <ref name="ref2" /> | ||
==References== | ==References== | ||
<references> | <references> | ||
| − | <ref name="ref1"> | + | <ref name="ref1"> Choo JH, Kim JD, Kim J. Imprinting of an evolutionarily conserved antisense transcript gene APeg3. Gene. 2008 Feb 15;409(1-2):28-33. doi:10.1016/j.gene.2007.10.036. Epub 2007 Nov 21. PubMed PMID: 18166281; PubMed Central PMCID: PMC2259222. |
</ref>(1) | </ref>(1) | ||
| + | <ref name="ref2"> Glasgow E, Ryu SL, Yamashita M, Zhang BJ, Mutsuga N, Gainer H. APeg3, a novel paternally expressed gene 3 antisense RNA transcript specifically expressed in vasopressinergic magnocellular neurons in the rat supraoptic nucleus. Brain Res Mol Brain Res. 2005 Jun 13;137(1-2):143-51. Epub 2005 Apr 8. PubMed PMID:15950772. | ||
| + | </ref>(2) | ||
</references> | </references> | ||
Revision as of 14:03, 13 January 2018
Contents
Annotated Information
Approved Symbol
Genomic structures of PEG3 and APEG3 in mouse, human and cow[1]
_and_APeg3_(B)_expression_level.png)
Peg3 (A) and APeg3 (B) expression level[2]
PEG3-AS1 (PEG3 antisense RNA 1)
Previous Symbols
PEG3AS, PEG3-AS,APEG3, NCRNA00155
Chromosome
19q13.43
RefSeq ID
NR_023847
pubmed IDs
18166281, 15950772, 24582979
Characteristics
APeg3 is transcribed in the antisense direction to the 3′ untranslated region of the Peg3 gene.[1] [2]
Expression
PEG3-AS1 displayd paternal allele-specific expression.[1] PEG3-AS1 is specifically expressed in vasopressinergic magnocellular neurons.[2]
| Experiment | Forward primer | Reverse primer |
|---|---|---|
| RT PCR | 5'-CTATCATGCCTACAGCTTCAC-3' | 5'-CTGCAGAGGTACCTTACCTGGT-3' [1] |
Labs working on this lncRNA
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA. [1]
- Department of Neurobiology, Northeastern Ohio Universities College of Medicine, Rootstown, OH 44272, USA. [2]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Choo JH, Kim JD, Kim J. Imprinting of an evolutionarily conserved antisense transcript gene APeg3. Gene. 2008 Feb 15;409(1-2):28-33. doi:10.1016/j.gene.2007.10.036. Epub 2007 Nov 21. PubMed PMID: 18166281; PubMed Central PMCID: PMC2259222.
- ↑ 2.0 2.1 2.2 2.3 Glasgow E, Ryu SL, Yamashita M, Zhang BJ, Mutsuga N, Gainer H. APeg3, a novel paternally expressed gene 3 antisense RNA transcript specifically expressed in vasopressinergic magnocellular neurons in the rat supraoptic nucleus. Brain Res Mol Brain Res. 2005 Jun 13;137(1-2):143-51. Epub 2005 Apr 8. PubMed PMID:15950772.
Sequence
>gi|260166653|ref|NR_023847.2| Homo sapiens PEG3 antisense RNA 1 (PEG3-AS1), antisense RNA
000001 ATTAAGTTAG CGATAGAAAG ATCTAAGGAT ACTAGCTCCT GGGCACCTAG GGTGCAAACT GACTTGTGGC AGCATAAGCT 000080
000081 GATGCTGCAC AGGGGACCCA AGCCATGTTG CTACTTGTCA CTTAAGGCAG GAAGCGCACA AAGGAAGTGA TGAAAGGTTA 000160
000161 TTAGCCTGCA ACATTATTTA CAGCATGAGA GCCTCTCCTA CGGTTCTCAA CCTTCATTAG GCACTACTGT GATCTAGTGA 000240
000241 TGGTTGTAAC CCATTCTTTA AAGGCAAAGA TGTAAGATTT ACAGGGAAAA GCTTCGGGTT TTATCAATTC ACTATCATCA 000320
000321 AACACATATT GAGTTGGTTA AAAAAAAAAA AAACCCAGAA CACAAATGTG TAATATTTTT GCATGAGAAC CACTTCAACA 000400
000401 AACATAACAT GTGGCAACCA ATCAATCTGG GTCACAAAAA GCCAATCCGT ATATTGTAAA GCCTTACACA GTATTAGGTT 000480
000481 CCAAAGTGTT GGCGCAGATG AAATGGCTGC AGAAAGAAGC TAAAGTACTT ATCTTTTCAA ACAGTAAGGA GTAAAAGCCA 000560
000561 TGTTATCTAT CATGCCTACA GCTTCACAAG ACTATTTAAG GGTAAGAAAC AAAACAATTA CTCAAAAAGA TATTGACAGG 000640
000641 GTTCAAATAA TGCACAATAA ATCTTTCTCA GGATCTAAGA CACTTAAAAA TATAATCAAA TTTGTTGCTC TCTTCCTCCT 000720
000721 CCAAAAAAAA AAAAAATTCA AAGAATACCA GGTAAGGTAC CTCTGCAGAG TAAACTGTAA CTGTATATCA TATAAATCCA 000800
000801 AATATATGTG ATCACTGTTC TGTCATAATT TGCTATTTTA TATACACCTC ATGAAACACT ATATATACGT TACACAAGTG 000880
000881 TCATTTACAG TTGATTTGGG CAAACTCTGT AGTCTGGAAT ACTCATAGGG TTTTCTCAAT CTGATTACTT GGAAAGGTAA 000960
000961 GATGTGTGCT ATGGCTTTCC CACATGCAGA CACTGACATC TGAAGGGGAA AGCTTAAGAC TGTGGAATCT GCACATTCGG 001040
001041 TCTCTTTTCA ATCTGAGTTT AGAGATGTTA AGTCAGGTGT GTAACACACT AAGGTTAAGT CTCCTACTGA CATTATCATG 001120
001121 GATTGGTTTG GATTCTCTGT GGTTTGGTAA GGGTCAAGTC CTAGGTGAAG GTTTTCTAAC CTTTACCCCA TGCCCTCAGC 001200
001201 CAGTGTGGGT ATTCTGGTGT CTGGCGAGGG ACAGGCGGTC ATTGAAGAGC TGCCCACAGA CGTCACATTT GAAGTACTTC 001280
001281 TCATCAGCTT GATTGGCACC ACCTGTGCTG GTGC
000081 GATGCTGCAC AGGGGACCCA AGCCATGTTG CTACTTGTCA CTTAAGGCAG GAAGCGCACA AAGGAAGTGA TGAAAGGTTA 000160
000161 TTAGCCTGCA ACATTATTTA CAGCATGAGA GCCTCTCCTA CGGTTCTCAA CCTTCATTAG GCACTACTGT GATCTAGTGA 000240
000241 TGGTTGTAAC CCATTCTTTA AAGGCAAAGA TGTAAGATTT ACAGGGAAAA GCTTCGGGTT TTATCAATTC ACTATCATCA 000320
000321 AACACATATT GAGTTGGTTA AAAAAAAAAA AAACCCAGAA CACAAATGTG TAATATTTTT GCATGAGAAC CACTTCAACA 000400
000401 AACATAACAT GTGGCAACCA ATCAATCTGG GTCACAAAAA GCCAATCCGT ATATTGTAAA GCCTTACACA GTATTAGGTT 000480
000481 CCAAAGTGTT GGCGCAGATG AAATGGCTGC AGAAAGAAGC TAAAGTACTT ATCTTTTCAA ACAGTAAGGA GTAAAAGCCA 000560
000561 TGTTATCTAT CATGCCTACA GCTTCACAAG ACTATTTAAG GGTAAGAAAC AAAACAATTA CTCAAAAAGA TATTGACAGG 000640
000641 GTTCAAATAA TGCACAATAA ATCTTTCTCA GGATCTAAGA CACTTAAAAA TATAATCAAA TTTGTTGCTC TCTTCCTCCT 000720
000721 CCAAAAAAAA AAAAAATTCA AAGAATACCA GGTAAGGTAC CTCTGCAGAG TAAACTGTAA CTGTATATCA TATAAATCCA 000800
000801 AATATATGTG ATCACTGTTC TGTCATAATT TGCTATTTTA TATACACCTC ATGAAACACT ATATATACGT TACACAAGTG 000880
000881 TCATTTACAG TTGATTTGGG CAAACTCTGT AGTCTGGAAT ACTCATAGGG TTTTCTCAAT CTGATTACTT GGAAAGGTAA 000960
000961 GATGTGTGCT ATGGCTTTCC CACATGCAGA CACTGACATC TGAAGGGGAA AGCTTAAGAC TGTGGAATCT GCACATTCGG 001040
001041 TCTCTTTTCA ATCTGAGTTT AGAGATGTTA AGTCAGGTGT GTAACACACT AAGGTTAAGT CTCCTACTGA CATTATCATG 001120
001121 GATTGGTTTG GATTCTCTGT GGTTTGGTAA GGGTCAAGTC CTAGGTGAAG GTTTTCTAAC CTTTACCCCA TGCCCTCAGC 001200
001201 CAGTGTGGGT ATTCTGGTGT CTGGCGAGGG ACAGGCGGTC ATTGAAGAGC TGCCCACAGA CGTCACATTT GAAGTACTTC 001280
001281 TCATCAGCTT GATTGGCACC ACCTGTGCTG GTGC
