Difference between revisions of "ENST00000602580.1"
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===Disease=== | ===Disease=== | ||
| − | * myeloid leukemia | + | * myeloid leukemia <ref name="ref1" /> |
===Expression=== | ===Expression=== | ||
Latest revision as of 09:51, 29 March 2018
MIR99AHG, the human miR-99a/100 ~ 125b cluster host genes, resides in the nuclear cell compartment, where it plays a role in the regulation of erythro-megakaryocytic development.
Contents
Annotated Information
Name
MIR99AHG: mir-99a-let-7c cluster host gene(HGNC nomenclature)
"megakaryocytic oncogenic non-coding RNA", MONC[1]
Characteristics
MIR99AHG 5 spans ~ 500 kb and is composed of at least 11 exons, of which only 3 are consistently predicted by coding exon-prediction programs.Exons 3, 6, 7, and 10 are alternatively spliced, suggesting multiple transcripts can be produced. The longest possible tran-script is ~ 1300 bp, with the only significant open reading frame (> 100 amino acids) located in exons 1 and 2. If this indeed represents a translated product, it implies MIR99AHG has an unusual 3’ UTR composed of ~ 9 exons[2].
Cellular Localization
MIR99HG is localized in the nucleus and their expression correlated with the corresponding miRNA clusters[1].
Function
LncRNAs MONC and MIR100HG as regulators of hematopoiesis and oncogenes in the development of myeloid leukemia[1]. In AMKL they contribute to the maintenance of leukemic growth[1].
Disease
- myeloid leukemia [1]
Expression
LncRNAs MONC and MIR100HG are highly expressed in AMKL（acute megakaryoblastic leukemia） blasts[1].
MONC is ubiquitously expressed at reasonably high levels and is conserved in mouse ESTs[2].
Labs working on this lncRNA
- Pediatric Hematology and Oncology, Hannover Medical School, Carl-Neuberg-Straße 1, 30625 Hannover, Germany[1]
- Eleanor Roosevelt Institute, 1899 Gaylord Street, Denver, CO 80206, USA. [1]
References
Basic Information
| Transcript ID |
ENST00000602580.1 |
| Source |
Gencode19 |
| Same with |
NONHSAT081219, MIR99HG, MONC |
| Classification |
intergenic |
| Length |
560 nt |
| Genomic location |
chr21+:17442842..17859828 |
| Exon number |
6 |
| Exons |
17442842..17442868,17443434..17443718,17553911..17554007,17603376..17603435,17763934..17764005,17859810..17859828 |
| Genome context |
|
| Sequence |
000001 ATAAAGGACT TGTCTAGGGG AGAGCCTATG GATCTGAGAA CGCTGTCTGG GCTTGGTACC AAGAGCTGGT ATTTCACAGC 000080
000081 AGCGACCGCC TCACAGACGA GCTGTGGGAA GCAGGAGGGA GACTCTCTCT TAGGGTGCCA CTACTATGGA GACACAGCTG 000160 000161 GGCTGAACAA GATTTGCTTC AAACGACAAC AAGAGAGACA GAAAGTATCT GGTTCAACCG CTGCCCGAGC AGGCAGGCAC 000240 000241 CAGAAGAGCT AGCAGCCAAT CCGGCCATGC TCGAAGCCAG CTCTGCAGCT CAGCCAATCA GTGACATCAT TGCTTTCTTT 000320 000321 AGCTTGCCCA TGGTGATGTG AAGATGAGAA GAAATAGCAA GGCCCAACCA GTTCTTCATC TGGAGACAGT TCAACGTTCT 000400 000401 GCAAACCAGA TCTTCAGGAA TTTTACTGGG ATAATTATCC AAATAAATTG CAAGCATTCT ATCCAAATGG AGCTCTTTCT 000480 000481 GAGATGAAGA GAATTCTCAA TGTCAAGATT TGAACAAGAA GAGAATGGAA TACACAATAT GGACATCCAT AAAAATTCAT 000560 |
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Emmrich S, Streltsov A, Schmidt F, Thangapandi VR, Reinhardt D, Klusmann JH. LincRNAs MONC and MIR100HG act as oncogenes in acute megakaryoblastic leukemia[J]. Molecular cancer. 2014,13:171.
- ↑ 2.0 2.1 2.2 Gardiner K, Slavov D, Bechtel L, Davisson M. Annotation of human chromosome 21 for relevance to Down syndrome: gene structure and expression analysis[J]. Genomics. 2002,79(6):833-43.
