Difference between revisions of "CT70"
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===Function=== | ===Function=== | ||
− | [[File:LeXis functions as a ceRNA of β-catenin.|right|thumb|:LeXis functions as a ceRNA of β-catenin([https://www.ncbi.nlm.nih.gov/pubmed/28744406 (Wang G 2017)]) | + | [[File:LeXis functions as a ceRNA of β-catenin.JPG|right|thumb|:LeXis functions as a ceRNA of β-catenin([https://www.ncbi.nlm.nih.gov/pubmed/28744406 (Wang G 2017)]) |
LeXis binds with heterogeneous ribonucleoprotein Raly which contains both an RNA-binding domain and a leucine-zipper coiled domain, to affect the expression of srebf2 gene, resulting to the change of the level of SREBP-2(sterol regulatory element-binding protein), to modulate cholesterol metabolism([https://www.ncbi.nlm.nih.gov/pubmed/27251289 (Sallam T 2016)]). | LeXis binds with heterogeneous ribonucleoprotein Raly which contains both an RNA-binding domain and a leucine-zipper coiled domain, to affect the expression of srebf2 gene, resulting to the change of the level of SREBP-2(sterol regulatory element-binding protein), to modulate cholesterol metabolism([https://www.ncbi.nlm.nih.gov/pubmed/27251289 (Sallam T 2016)]). | ||
Revision as of 04:43, 27 July 2019
Contents
Annotated Information
Name
Approved symbol: CT70
Approved name: cancer/testis associated transcript 70
HGNC ID: HGNC:37195
Previous names: cancer/testis antigen 70
Alias symbols: LeXis
RefSeq ID: XR_001746866
Characteristics
LeXis, named as "Liver-expressed LXR-induced sequence", it's gene locus Lie in close proximity to the canonical LXR target gene Abca1 in mouse((Sallam T 2016)), was distinct gene with Abca1, almost exclusively located in the insoluble nuclear pellet in fractionation studies, along with the known nuclear lncRNAs XIST and histone H3.
Expression
The highly expressed in primary mouse hepatocytes treated with GW3965((Sallam T 2016)) and upregulated in OS(Osteosarcoma) tissues((Wang G 2017)).
Regulation
Please input evolution information here.
Function
[[File:LeXis functions as a ceRNA of β-catenin.JPG|right|thumb|:LeXis functions as a ceRNA of β-catenin((Wang G 2017)) LeXis binds with heterogeneous ribonucleoprotein Raly which contains both an RNA-binding domain and a leucine-zipper coiled domain, to affect the expression of srebf2 gene, resulting to the change of the level of SREBP-2(sterol regulatory element-binding protein), to modulate cholesterol metabolism((Sallam T 2016)).
LeXis positively regulates CTNNB1 expression by functioning as a ceRNA against miR-199a to promote osteosarcoma growth((Wang G 2017)).
Disease
- osteosarcoma
- colon adenocarcinoma [1]
Evolution
Please input evolution information here.
Labs working on this lncRNA
- No.4 Department of Orthopedics, Cangzhou Central HospitalCangzhou, Hebei Province, China
- Department of Pathology and Laboratory Medicine, Howard Hughes Medical Institute, University of California, Los Angeles, California 90095, USA.
References
- ↑ Shahriyari L. Effect of normalization methods on the performance of supervised learning algorithms applied to HTSeq-FPKM-UQ data sets: 7SK RNA expression as a predictor of survival in patients with colon adenocarcinoma. Brief Bioinform. 2017 Nov 3. doi: 10.1093/bib/bbx153.
Annotation originally sourced from lncRNAdb.
Basic Information
Transcript ID |
NONHSAT113149 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
332 nt |
Genomic location |
chr6+:52860418..52860749 |
Exon number |
1 |
Exons |
52860418..52860749 |
Genome context |
|
Sequence |
000001 GGATGTGAGG GCGATCTGGC TGCGACATCT GTCACCCCAT TGATCGCCAG GGTTGATTCG GCTGATCTGG CTGGCTAGGC 000080
000081 GGGTGTCCCC TTCCTCCCTC ACCGCTCCAT GTGCGTCCCT CCCGAAGCTG CGCGCTCGGT CGAAGAGGAC GACCATCCCC 000160 000161 GATAGAGGAG GACCGGTCTT CGGTCAAGGG TATACGAGTA GCTGCGCTCC CCTGCTAGAA CCTCCAAACA AGCTCTCAAG 000240 000241 GTCCATTTGT AGGAGAACGT AGGGTAGTCA AGCTTCCAAG ACTCCAGACA CATCCAAATG AGGCGCTGCA TGTGGCAGTC 000320 000321 TGCCTTTCTT TT |