Difference between revisions of "NONHSAT129210"
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Revision as of 08:05, 8 October 2014
Please input one-sentence summary here.
Contents
Name
AK023948
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT129210 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
2807 nt |
| Genomic location |
chr8+:134067204..134070012 |
| Exon number |
1 |
| Exons |
134067204..134070012 |
| Genome context |
|
| Sequence |
000001 TTTGTCACTT CCAGTGCCCT GCCCAGCCCT ACAGAAAATA CGTGATTATT TAAGGGTGAA GAAGCCAAAG CTGGGAGAGT 000080
000081 TTTAGTCACC TATCTAGGGG AAAGTGTGAA GATTTCAAAG CCCAGGGTCC TTCACGGAGC CACACGGCTC TCCTTGGCAC 000160 000161 TTAATCTTCA AGCTCTCCTC AGCCCACACT TGACCCTTAA CAGGGGAGAC AAAGGCAGAC TCCAGGTAAG TTGTCAGGGT 000240 000241 TAGCATAAGC AGCTCAGGGC AACTGGTGGG TAGGGAGCTG TACAGCCCAG GGATTGCAGC CTCTTGTTTT GCATTTCCTG 000320 000321 GAGTCAAGGC TAAACTCATG GTCTCCTCAG GGGTCAAAGC AGGCCTGACT TTCAGTGTCA TCTTCAGGAC ACACACACGC 000400 000401 ACGCGCACAC ACACACACAC ACACACACAC ACACACACAC ACACACAGGA TTATACATGC AACTAACCAA TCACACAGAG 000480 000481 CTGGACCATC TAGCCTGGTA GAAGGTCTGC CGAGTTCTGC GGGTCACCAT GAACCAGGCT TGTGAGCCCT CTTAGTCATA 000560 000561 TGTAAAGGGC TGTGTTTGAG ACCCGGTAGC CCACAAAGCT CTTTTCTGCC CAAGCCTTGG TTTTTCCGTA TGTTAGTGGG 000640 000641 GACAGATTGG AACTAAACAG ACCTTGAGTC TTTTCAGGGT CAGTCTCAAC TCTCTTAGAT GCTAGAGGGA TATAGGCAGG 000720 000721 GCTAGCACAG AACAGAAGCA AGAAATAGTC AAAATGAATA TTTTGGACTG CATAGACTCA GAATGTGCTT TACTTGGGCA 000800 000801 CCCAGGGCTT CTCAGACTTC AGTTGTTTTC ATTCCACCAT TCCCTTCCTC CCCCTCCTCA TCACCAGCAG CAGCAGCAGC 000880 000881 AGCAGCAGCA GCAGCAGCAG CAGCAGCAGC AGGGCGCACA GCTCTGGGGG GAATCAGGCA CTGGGCTGTG GTGGTACCGA 000960 000961 GGTTACCCCT GAAGTCCTCA CGCCTCCCTG TGAGGTTGAT AGATTGAAAC TACCTTATTT TGAGTATGAG GAAATAGAGG 001040 001041 CACAGTGAGG TCCAGAGACC GCCCAAGAGC ACACACCTAG GAAGCTGAGT GCCAGGTTTC AAAACCAGGT CTCCCTGGGC 001120 001121 AGGGCAGGGC ATGGCTGTGT TTGAACCACT CAGGTCTCCT TTGTCATAGT TGACAGCACT AGTTACTTGA TAATGTCTTT 001200 001201 TTAAAAATTA ATTTACTTAA AAAAACTTGA GTGCTATTCT AAGCAATGTG ACATCGTGGA TTTCTTGGGC TAGTTATATA 001280 001281 TTTTATGATG TTCATCAATG TACAATTATG TAAAAGTTGA ATGATCAAGT TCTGCCTAAG ACCATCTCAT GTACCAGCAG 001360 001361 CGAGGTTAGA TTCAAATAGA AAAAAGGGAT CTGGTCCAAG ATTTGACACG GATTCACTGT CTGTGGGACC CCTTGCTAGG 001440 001441 GCACTTGATC ATCTGGGTCA TTAAATCTGG GGGCCAGGCA CATTCTCATT CATTCGAGAC GAGCCCATCC TCTTCCAGAG 001520 001521 CATGGGGGCT TCTTGAAACC CTGTCCTTTC CAGGCACACA CTGAGGTGGG GAGAGGGACC CTGGAGTCAG ACCACCTGGC 001600 001601 TTTGAATCCC AGCTGTCTCC TCTGAGCTGT ATGGCCTAAG GCAAGTCATT TAAGCTTCTT GTACCTCAGA TTCTCCAACT 001680 001681 GCAAAACGGA GATGATAATA GGCAGAAGCC TCGTGGGGCT GTGAGAATCG AGTCTGCATA TGTAAAGCAC TGGGCACTGT 001760 001761 GTCTGGAGGC TGTGAGCACC AAGCGGCTCT AATCATTCCC GTTTTACAAA GGAGGACAGA GAGACTAAGG AGACAAACTC 001840 001841 TTTCTCATCT CTCGTTGTGT GTCAGTGCAG GGGCAGGACT AAAAGCTGGT CTGTGGTCTG CAAGCTTTAG GGGTTACAGA 001920 001921 GTCCCCAGGA ACTCCTAGGA AATTCAGCTG GCGGCTACCT TCCACCATCC CCAGGTTCTG ATTCGTGGGC CTGGGGTGGG 002000 002001 ACCCAGGAAT CTGCATTTCA GTTACTTCCC AGGGGATTCT GATGCAGGTG GTGCGAAGAC CACTTACTGA GAAGCTGCAA 002080 002081 GCTGGGTTTG AGAGGTCCCT ACCTCCTTCT TCCTTCCCCG AGCCCCACCC GCCCCCTTCT TTCCACTGGG CAACTATGTA 002160 002161 AACAGCATTA TTTCTACCCT TGCACGGACA GAAAGGGGTC TGTGCTGCTG CCTCTGTTGG TGCCTCTTCA GGTCAGGGTG 002240 002241 ATAAGAAGAG AAGGAACAAA GAGGGGAAAA AGATCACAGC AGAGAGACAG AGTGCTCATT TTAAGGTGGA AATATGCCAT 002320 002321 TTCCTGACCA CAGCGGGACT TCCCTAGGTT GTATTAAAAA ATCCTGTACT GCCCATGTCT GGTACAGAAG TATGTATAGA 002400 002401 ATTGTAGAGA AAATGAACAC TTTGGGATGA TTTGAAAGCA AATTACAGAA CTACCAGTTT CACCACTTTA AAACTTTTGG 002480 002481 GGAATGGCCA TTTAGATATA ACCTGGTGCA GTCAGGTAAC CCCAAACAGA GTTTTTAAAA GTTTCCACAC CCTTCTTTGC 002560 002561 TGGTGCCTGC CCTGCATCAT GCTGTCGCTG TGAGGAGGGA CTTGTTCCAG ATCTCTGGGG CAGCCCGAGT GTCTCACCTA 002640 002641 AAGTCACACA GCTTCCACGG AACATTACTG GAAGCTCAGT GAGGGCCTTC TGCCTCTGAA ACTTGCTCTA TTTCCCTCAA 002720 002721 GTCCTGCTTC CTTTTGTAGG TTTAAGACAT TAGTTCCTGA GAAATTGACT AATCAAGAAT ATTCTGGAAA TCTTAGTTTA 002800 002801 GCAAAAC |
Predicted Small Protein
| Name | NONHSAT129210_smProtein_782:1006 |
| Length | 75 |
| Molecular weight | 7494.6628 |
| Aromaticity | 0.0675675675676 |
| Instability index | 59.0527027027 |
| Isoelectric point | 12.003112793 |
| Runs | 9 |
| Runs residual | 0.0210283454186 |
| Runs probability | 0.0501678148737 |
| Amino acid sequence | MCFTWAPRASQTSVVFIPPFPSSPSSSPAAAAAAAAAAAAAAAGRTALGGIRHWAVVVPR LPLKSSRLPVRLID |
| Secondary structure | LLLLLLLLLLLLEEEEELLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLEEEEEEELL LLLLLLLLLLEELL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLLLLLL |
| PiMo | ooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiii iiiiiiiiiiiiii |
