Difference between revisions of "Lnc-EVX1-9:1"

Revision as of 02:27, 10 October 2014

Please input one-sentence summary here.

Annotated Information

Name

HOXA6as

Characteristics

Multiple spliced transcripts between HoxA6 and HOXA7 on the antisense strand, share some splice junctions but have different 5' and 3' ends (Sessa (2007), Sasaki (2007)). Some HOX6as transcripts overlap to one or both HOX protein coding genes (Sessa (2007), Sasaki (2007)).

Function

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Expression

Expressed in adult lung, kidney, testis, placenta, colon, muscle. Fetal ovary and kidney, similar to HOXA6 and HOXA7 (Sessa (2007), Sasaki (2007)). Expression can be induced by retinoic acid (Sessa (2007)). Shows collinear regulation of expression like HOX PTC genes (Sessa (2007), Sasaki (2007)).

Conservation

HOXA6as transcripts contain sequences conserved in mammals and even sequences ultra conserved in vertebrates. Similar mouse transcripts are not known, however, transcripts which run antisense to both HOXA5 and HOXA6, that share an splice junction with HOXA6as and transcribe through the vertebrate conserved element, are present in both species. Misc Example accessions: AK091933, AK092154.

Misc

Example accessions: AK091933, AK092154.

Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	lnc-EVX1-9:1
Source	LNCipedia2.1
Same with	,
Classification	intergenic
Length	2354 nt
Genomic location	chr7+:27186781..27193904
Exon number	,
Exons	,
Genome context
Sequence	000001 TTCTCTTTTA AGAAGCCAAA GAAACTTTGC TGGTTCTTTC ATCCTTTCTT TCTCTCTATT CCTCTTTCTA CTCTGTTTCC 000080 000081 TCCTTCTTTC TTTCTTTTCC TGCCTCCTTT CCCCTCTCCC TCCACTGTCT TGGGATATGT CTTACCCGCG CAGGAGTTCA 000160 000161 TCCGCTGCAT CCAAGGGTAA ACCGGGCTCG TGTACTTCCG GTCGGCGCCT TCGTCATGGA GTGCTTTGCC CTGCCCGCTG 000240 000241 CTGCTGTCGG AATTCCACCC ACGCACCTAT TCCCCCTCCC AGCGCTTCAG ACACCTCTCT CATCGAAAAA CCGGGCGAAG 000320 000321 GGAAGCCGGC AACGAGCGGA GAACTCTGGC TGAATTAACG GTGGCTCCCA GAAGCTCCTG CCCCTCTGAC AGCTGTCGCT 000400 000401 TGGGCAGCCC GAGAGAAGAA TTGTCCTCTT TCCTGGTGCC AGAGGACGCA GGAAATTAGC CAGGTTGCGA GTTGCAAAGC 000480 000481 TGCTGCCGCG GCGCCGGGAA CGGAGCGCGC CCAATCTCCA GCGGGAGCCG CCAGGCCTGG CCTGGCCTGG CCGGGGCTTC 000560 000561 CCTTCGCTCG CCATCTCCGG ACAAAGCACA GCCGAGCCCG GCTGGAAGGC AGAGCTCCGA AGCAGGCAGG ACGGAGTGGA 000640 000641 GCAAAAGAAT GCGGCTCTAT TCTCGCAAGG GAAATTATAA AAAAGTTCAT GTTCACGGTT CTCATCCACA TGACCGACAG 000720 000721 CGGCCAATGG AAGGGCCGAA CAACTCATAA AGTTGTATTG CAAAGTTGTA AATTTTCATA AACAACAACG GATTTATGAC 000800 000801 CCTTTCCCCA TCACTGAGAG GAGGCAGCTC TTACACCGGC GCCATCTTAC CACCGAGGCC GCCCCGACTT GGGGCCTCAG 000880 000881 GTTTTACAGA CCCTTTTGGG CCAGGTTTTA CTAAAAGAGC CATAAGAAGC GGGCCCAGCC CAGGCAGGAG ACTGGAGACG 000960 000961 AGGTCTTGCA GGCGGAACTC AGGATGCTCT GAGCTGCCCG CACAACCCCT GGACCTTCAC CCCTCGCCCC TTCCCCGCAT 001040 001041 CCAGCTGCCC CAGCCCCTGC CCAGGCTGCG TAGCCTAGCG GGGGTCTGCG GTCCTAGCCC CTCCCCGCGC CACCTACTGC 001120 001121 AGTGCCGGAC CCTGGGGCCC CCTCGCCTGG TCTGCAGGCG GGGTGGGGAC CTTAAATCCC ATTTCCTAGC CTGGGGCTGG 001200 001201 GTTCAGGGCG CATGCGAATC CGGAATCAGC TCTGGGTAAT GCCCCTTTCC AAGCCCACTG CTCAGCCTTA GAGGAAAGTG 001280 001281 TGGATTTGAA ATTTCCTCAT GGAATTGATG GAGGTTTTTA GGTAGATTCA TAGAATATAA CGTATCTACC AAAGATTCCG 001360 001361 TTTTCAAGGG ATCTAGAAGA TGTTAGTGCA CACGCAAAAA CCAGACAAAC GTCTCTACAC GGATAAAGGC ACATATACAA 001440 001441 TTATGCACAC AGGGAAGGGC ATACACTCTA TTGTGGGCAC AGAATGACAT GCAATTATGG ACACACAAAA ACACATGCAC 001520 001521 CCAATTATGG ACACCAAAAT ATATACAATT GTGGAATTAG GTAAAAACAC ACACACAGAA ATACATACAC AGAAAAATAA 001600 001601 GCACATACTC ATACAAATAC ACACATAAAA ATACATTAAA AAGATACATG ACACCAATAC ATGGGTACCC AACACTTGGA 001680 001681 CCATCACAAG GACAGCCACC CCACTTTTGC TTCCCCACTG CCCCCTGCCC TCCAGCCATA CTCACCTCCC CTTT

@@ Line 2: / Line 2: @@
 ==Annotated Information==
-===Transcriptomic Nomeclature===
+===Name===
-Please input transcriptomic nomeclature information here.
+HOXA6as
+===Characteristics===
+Multiple spliced transcripts between HoxA6 and HOXA7 on the antisense strand, share some splice junctions but have different 5' and 3' ends ([http://www.ncbi.nlm.nih.gov/pubmed/17185360 Sessa (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/17445766 Sasaki (2007)]). Some HOX6as transcripts overlap to one or both HOX protein coding genes ([http://www.ncbi.nlm.nih.gov/pubmed/17185360 Sessa (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/17445766 Sasaki (2007)]).
 ===Function===
 Please input function information here.
+===Expression===
+Expressed in adult lung, kidney, testis, placenta, colon, muscle. Fetal ovary and kidney, similar to HOXA6 and HOXA7 ([http://www.ncbi.nlm.nih.gov/pubmed/17185360 Sessa (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/17445766 Sasaki (2007)]). Expression can be induced by retinoic acid [http://www.ncbi.nlm.nih.gov/pubmed/17185360 (Sessa (2007)]). Shows collinear regulation of expression like HOX PTC genes ([http://www.ncbi.nlm.nih.gov/pubmed/17185360 Sessa (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/17445766 Sasaki (2007)]).
+===Conservation===
+HOXA6as transcripts contain sequences conserved in mammals and even sequences ultra conserved in vertebrates. Similar mouse transcripts are not known, however, transcripts which run antisense to both HOXA5 and HOXA6, that share an splice junction with HOXA6as and transcribe through the vertebrate conserved element, are present in both species.
+Misc	Example accessions: AK091933, AK092154.
+===Misc===
+Example accessions: AK091933, AK092154.
+===Transcriptomic Nomeclature===
+Please input transcriptomic nomeclature information here.
 ===Regulation===
 Please input regulation information here.
-===Expression===
-Please input expression information here.
 ===Allelic Information and Variation===
@@ Line 43: / Line 56: @@
 }}
 [[Category:Intergenic]]
-{{lncrnadb|
-tID = lnc-EVX1-9:1|
-ltID = HOXA6as|
-ann = <tab class=wikitable sep=tab head=top>
-Section	Description
-ID	HOXA6as
-Characteristics	Multiple spliced transcripts between HoxA6 and HOXA7 on the antisense strand, share some splice junctions but have different 5' and 3' ends ([http://www.ncbi.nlm.nih.gov/pubmed/17185360 Sessa (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/17445766 Sasaki (2007)]). Some HOX6as transcripts overlap to one or both HOX protein coding genes ([http://www.ncbi.nlm.nih.gov/pubmed/17185360 Sessa (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/17445766 Sasaki (2007)]).
-Expression	Expressed in adult lung, kidney, testis, placenta, colon, muscle. Fetal ovary and kidney, similar to HOXA6 and HOXA7 ([http://www.ncbi.nlm.nih.gov/pubmed/17185360 Sessa (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/17445766 Sasaki (2007)]). Expression can be induced by retinoic acid [http://www.ncbi.nlm.nih.gov/pubmed/17185360 (Sessa (2007)]). Shows collinear regulation of expression like HOX PTC genes ([http://www.ncbi.nlm.nih.gov/pubmed/17185360 Sessa (2007)], [http://www.ncbi.nlm.nih.gov/pubmed/17445766 Sasaki (2007)]).
-Conservation	HOXA6as transcripts contain sequences conserved in mammals and even sequences ultra conserved in vertebrates. Similar mouse transcripts are not known, however, transcripts which run antisense to both HOXA5 and HOXA6, that share an splice junction with HOXA6as and transcribe through the vertebrate conserved element, are present in both species.
-Misc	Example accessions: AK091933, AK092154.
-</tab>|
-}}