NONHSAT041063

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Annotated Information

Name

IPW: Imprinted in Prader-Willi syndrome

Characteristics

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Function

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Expression

Ubiquitously expressed in humans. From part of Snurf-Snrpn domain that shows ubiquitous human expression (Vitali (2010)). Host transcript for multiple snoRNA genes. Mouse RNA stability was close to median for lncRNAs, with a half-life of 3.2 hr in N2A (neuroblastoma) cells (Clark (2012)).

Conservation

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Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	NONHSAT041063
Source	NONCODE4.0
Same with	,
Classification	intergenic
Length	4498 nt
Genomic location	chr15+:25361692..25367623
Exon number	3
Exons	25361692..25362662,25363415..25363529,25364212..25367623
Genome context
Sequence	000001 CCAAATCATA GATCAAGATA TTTTATTTAT GTATGTCTTT TAAATGAAGA GTGGTTAGGA TAGTCCTGAT TATTGCACAT 000080 000081 AAATATTGCC TTTCACTAGA TTATTGTTTT GGGCCAAATT TTAGACTATT ATTTTAAAAA AGAGTACCTT AGTTTAATCC 000160 000161 AACCTTTCCA GATACTTAGA AATTATTGAA ATGTATATTT TGTGAAGATG GTCTTATGAA AGTTGTTGAG CTAGAAACAT 000240 000241 GTCCTTCACC AGTGGAATTC TTAGAAGCTT TCCTTGGGCT TCACTGGGTG CTAATAGACC ATGATCGTAT TGCTCTGTAT 000320 000321 ATAATGGTAC AAATTTTGTT TTATAACACT CAGTCTTAAT AGAATGGGAA TATTTTATCT TACTAACGTA GTCATTAGCT 000400 000401 GGCCACTCTC TGTGTCCATT GGACCTTATA GGGTAAAGGG AGGGCAGTGC GTATTTGAAG CCTGTGCACG TGACACACAA 000480 000481 AGGGCTTAGC AACCTCCGTG TTTTCCCAGC ACAGGATACC CATTCTTCCT GAATGTTTCA TTGTTAAATT AGATTGTGTG 000560 000561 TGTGTGTGTG TGTGTGTGTG TGTATTTTAT ATTAACATAC AGATGTATGT ATTTTAGTTG CATTTTTTTT CTTAAAATGT 000640 000641 TATTTTTTCT CTTTTTCTTT TATGTCAGGT GATGATAGAG CCCCTAGGGA AGCAAAACTG TCCATGCCCT TGCCTTAACT 000720 000721 TTCAGATACG ATAAAAACAA CATTTATAAA ATACCTGTCT TAGAAATATT AGCTAAAATT ATGTTGGGGA AAGTATGTTT 000800 000801 GAAAATAGAA TTGTAAGCTA CCACATTGTG ATAAATATTA CTAAATTTGT TTATTGACTT GTCAGGAAGC AAAAGAATGA 000880 000881 ATTAAAGAAA ACTCCAGAGA ATGAGCTGAC AACCTACTCC CTGGTCAGTG GCTCTCCATG CCTACCTGTG GTCTCTTGGA 000960 000961 CACCCTTGCA GAAGATGACT TCCTGGGAAC TCTTCTGGGA GTGAATGTTA TCAGCAAATT CCCAAAACAA CACCCCTTAG 001040 001041 ACAAAAAGCC TCCTCACCTA TGCATTGCCT AGACCACCCA CTAAAGGTGA TGGCCACAAA GAGGTGGATT TGTTGAGTTG 001120 001121 GTGCCATTCC TTCTACTGCC AGCTTCACCA AAACAATGAC ACAGTCTTCC TTCCGCATGG AGACTCTTCT CTTTCCTGTG 001200 001201 TTGCAGTGGA TGCCTCCTGC AGATAAGAAA TGCTTAACTG AGAAATGCTC ATGTTGGGAT ATCATCGATG AGACTTTAAT 001280 001281 TTGGGCATGG TGACTGTTTC CCTTGCTGCC ACTTGACTCA ATCCCAGGAG CCTCAGTAGA GGATATAATA TTACACAAGA 001360 001361 TGCTCAAAAT GGTGGAATTG CTCAGTGCTC CCATAAATAT ACATTTATAA TTTTCATTTG CCACATGGTA AACTGAAAAA 001440 001441 TACAGACTAT ATTAAAAAGA AACTGCATGA TTTTTTTTCA AAAATTCAAA GCATATTTAA ATAATATATA AATTAAATGC 001520 001521 CCTCCTCTCT TCCAATTCTG TCCCTATAGT TTTCCTCTAT TAAGTGAACT ACATGCATTC TTTTAGTGGA TAGATGCACA 001600 001601 CAAACACACA AGCCATTATG GGGAAGGATC CACGTGTGTG GCCATATTGT AACACATTTT TCTGCAAATC ACCTCTTTCA 001680 001681 TTTAACAGCC CTTATTCAAT GGCCTTTTTC TTTTTCAGTA GTACATACAC ATCTGTGTCA TTTGTTGAAT GACGACATGA 001760 001761 ATGTTTTGTA GATAAAATAT AATTAAATGT TTTAAGCATT TCTCACTCAT AGATATTTAT GTTAGCACCA AATTTCTGTG 001840 001841 CAATGAACCT CCCTATATAT CAGTAATTTT GCATTTGTCT ATAATATCAT AATAAATTAC TTATCAGTTG AATTACTGGG 001920 001921 ATTAAGTATG TGCACACTTT ATATTTATAT TTTGAAAATT ATTGCAAGAT TGCCTTCAAA AATGTGGTTA ACAACTTTAT 002000 002001 CTTCAAATGG CAATGAATGA GATTGCCAGC TTTCCTACAG CCTCACAGAC AATGGATTTT ATAAATATTT AACATTTTTG 002080 002081 CCAATGTGAT CACCCAAACT ATTGTCTTAA ATTGTATCTC TTTTGTTTTT GAGTTTGGTC ATTTTTTCAT GTTTATTAGC 002160 002161 CATCTGTATT TTTTAATTTC TTCTTTATGT CCAATTTTGT GGGTGGGAGG AGGATTTAGT CTCTTCCTGA TTTCGAAGAG 002240 002241 CTCATTTACT ATTTCGGGAA ATAAGATTTG GATTGTCAAC CATTATAGCT ATTTTTTACA CACTTTTCAA CTTTGTTTTT 002320 002321 GTTATAAGAA TGTGTATGAT TGTTACATGT CCAAGTATAA CCATGTTCGC TTTTATGGCT TCTGAGTTTC ATGTCATTTT 002400 002401 TGGAAAGATA TATATATTGA GTCCATAAAA CCCTTCACCT ATGTTAAATT CTAATTCTTT TGTGTTTTTT TAATTCAAAT 002480 002481 TCTTAAATCA TGAGAAATTT TTTTGTTTTG AAATCTTAAA GTTGCCAAGT TACTTGCCAT TACTTGCGAT TATTTGCCAA 002560 002561 TAATTGCCCA TTTATCTGTA CCGCCATCTT GCGCATATGC TGTACTCTCA TCTGTGACTG GCTCCATTTT TGTTCTGTGG 002640 002641 ATTTGTGTGT CTCTTCTTCT GCCTCCTGTC TCGTGTCTGC TCGTTGGAAG AAATTACAGT TTAGACTGCA ATTTCATCAA 002720 002721 CTTTAATAAA TCAATTGAGG GGAGAATTGG TTTTTAAAAA TATTAAGTAA GTCTTCGTAT CCAAGGACAA GGTATGTCTT 002800 002801 TTCTTATTCA ATAATTTTAA TTACTGTTAA TATTTTCACT GTGGTGATGG GAGTTTTTCT TTTAATTTAT TTTCTTGTTC 002880 002881 ATTTTTTGTA TCTAAAGTTT TTGTTTTGTT TTGTTTTGGG GGTAAGTTGT CACCTTACTG TTTCTTGTTG CTTTTCAGAT 002960 002961 TTTTTCAAAG TATAGACTAA ATCCTTCACA AATATTTAAA GTTTTTATTT TCCCCCTTCA TATTGATCCT GATTTTAGTT 003040 003041 ATGTTGACAA AGTCCACAGA CTGTTACTAT CAGAACACTT GAACAGTTAT GGAAATATTA CCTACCCTTG ATTTAATCAG 003120 003121 AGTTTAATGG TATGCTTCTT TGGTTTGACT GGCACATTGT CGCTGGTCAT TTCCTCCCAA AGACCACCAG AAAGAGCTAT 003200 003201 GATCAAGCAA AGCTGAGTTT GTTAAACTTA CCTGCAGCAA GGGAAAACAC CACCTTGATA GGGTTTAATA ATGTTTCAAA 003280 003281 ATCAAGAAAT GAGGCTTTGG GGTCTGGGCA GGGAACTAAT TAGAAATGGG CAAAATTTGT CATGCAATAC CTTGTGGGAA 003360 003361 AGTGAGATGA GGTTCTTAAT GTGAGTATTG ATGGTGAAAT CATTTTCTAG GTGAGCTGTT TGCCTATATA AAGATGTTAT 003440 003441 CAATGACAGA AGAACTATTT GCCTAGATAA ACAAACTGAA TTTATTTATT GGTTTACAGT TTTATCTTGC TGGGCAGGAC 003520 003521 TCTGCTGGGG GTGGTATCAG GTCTTATTCC CAATAGGTAA GTTATTTGGA TATGGGTGGT CTTAATCATC AATGTGTAAA 003600 003601 ATGCTGATTT TAAGTGCGAA ATACTTTGTC TACCATGTTA GGAAAGTCTG CCACCTTTTA TCTTTTTTAA GGAATTTTAA 003680 003681 TCAAAACCAG GTGGTAGATA TAATCAAATT GTTTTGCAGA ATCAATTTTC CTGTTCTCTT TAAAGACTTT TATCACTGTG 003760 003761 AATTAATTTA CTATTATTGC AACTTCCTTT AATTCCTTGA ATGAACAGAC CCTACTGGTT TTAAAAATGT TTTATTCTTT 003840 003841 TAATTTACTA CTTAATTGTG GGTATTTTAA TTTGATTTGG AATTTTTACA AGTATACAAC TAAGTGAAAT TGATCTGTGA 003920 003921 TTTTTCTTTT TTGTGCTATT TTTGTCATGT TTTGATATCA GATATTCTGG TTGTGTTAAA ATAATTTTGA GGATTTTCTT 004000 004001 CTTATACTGT GTTCTAGAGT GGGTAAAAAA GCCCTAGTCT CACTATCAGT GTTTAAGTGA ACACATCAGT GACATCATCT 004080 004081 GGACTCTCCT TTGTTTTTGC TGGTTTGGAG TTAGGACATC TAGAAGTTTT TTTCTTTTTT TCCTTTTTTT GTATGGTTAT 004160 004161 TGCTTGTTCT TTGTTTTGTG TCAAATTTAA CCTGTTTTCT CTTAGCAAAT CACAGCTCAT GCAGATTTTC AAACACATTA 004240 004241 GCCTTGTTAT ACAAAGTGTT CTTTCATCAT TCTATTAAAT TTCCATTTTC ATTCCAGTTA TAGTTATTTC TGCTGTGCCT 004320 004321 TTGTTAATGA ATAAGTTTAA ACAGTGGATG TTTAGCATCA CTAGCCTTCC CCTTCCATCT CCCTTAATCA GGACCTTGGT 004400 004401 ATAATTTATC AGGTATTTTT TAAGGTTCTA ATTTACTTAT ATATATTGTT TCTGTATTCT TTTGTTTCTT TTCTTAATAA 004480 004481 ATTCTTAAAC CTGTGTAA

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