Difference between revisions of "ENST00000585273.1"

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sequence = <dnaseq>CTTCTACCCGGGGGCTCCAGTGCATCTGGCTTTATCTCTGGGGTGCTTCCATACAAAGGGGACAGAAGAGATGATGGAAGGCCTCAGTACTGCAGGAGGGGAGACGGATGTCATCTACAATCACACAATACATGGGAGGTCACAGGGTCTCGGGCCGGGTGCAGTGGCTCACTCCTCTAATCTCAGCACTTTGGGAAGCCGAGGTCTACAACATCCAGAGCAGCCACATTGCAAGTGCTCAGTAGCCACATGTGGCTGGCACATGTGGCCCATGGCAACTGTGCTGGACATGAACGCCAGGGTGACGTAACAATTCAAACCATGAAGAGGTAACAGAGCCCTTCGCGCGTCTCAACACGTGGTGACGCAGCTAATAACCTGTGATGCATACATGGGAACAAATGCATAGAAAAACTTGTCAATGACACGGCAAAGTAAAACCCAAATGAAGCGAGGTGAAAGAATGGGCTGCAGCGCAGGCAAAACTGCACCACGTTACAGACTGCTCGCCTGGGATGGAACGGTGGGGAGGTGCGCAGACGGATGGACAAGCGCCTGGCAAAATGGATTTCTTTTCCTAGACTGCTAATGCTACTAACAGTTCCCTCCTCACAGGGTCGCTATAACGAGGTAACATACAGCACTTAGAAGACGGCCTGACCCAGAATAACACTAATGTTCACATGGCTGCGAGTCTCAGACCAAAATCAATAGCCGGTATCTACTGAAACTGCAGCAAGGCGAAACCACG</dnaseq>|
 
sequence = <dnaseq>CTTCTACCCGGGGGCTCCAGTGCATCTGGCTTTATCTCTGGGGTGCTTCCATACAAAGGGGACAGAAGAGATGATGGAAGGCCTCAGTACTGCAGGAGGGGAGACGGATGTCATCTACAATCACACAATACATGGGAGGTCACAGGGTCTCGGGCCGGGTGCAGTGGCTCACTCCTCTAATCTCAGCACTTTGGGAAGCCGAGGTCTACAACATCCAGAGCAGCCACATTGCAAGTGCTCAGTAGCCACATGTGGCTGGCACATGTGGCCCATGGCAACTGTGCTGGACATGAACGCCAGGGTGACGTAACAATTCAAACCATGAAGAGGTAACAGAGCCCTTCGCGCGTCTCAACACGTGGTGACGCAGCTAATAACCTGTGATGCATACATGGGAACAAATGCATAGAAAAACTTGTCAATGACACGGCAAAGTAAAACCCAAATGAAGCGAGGTGAAAGAATGGGCTGCAGCGCAGGCAAAACTGCACCACGTTACAGACTGCTCGCCTGGGATGGAACGGTGGGGAGGTGCGCAGACGGATGGACAAGCGCCTGGCAAAATGGATTTCTTTTCCTAGACTGCTAATGCTACTAACAGTTCCCTCCTCACAGGGTCGCTATAACGAGGTAACATACAGCACTTAGAAGACGGCCTGACCCAGAATAACACTAATGTTCACATGGCTGCGAGTCTCAGACCAAAATCAATAGCCGGTATCTACTGAAACTGCAGCAAGGCGAAACCACG</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:ENSG00000230366.5]]
+
[[Category:Intergenic]][[Category:ENSG00000230366.5]][[Category:lnc-TTC3-1]]

Revision as of 05:55, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000585273.1

Source

Gencode19

Same with

lnc-TTC3-1:9

Classification

intergenic

Length

751 nt

Genomic location

chr21+:38580804..38592997

Exon number

5

Exons

38580804..38580845,38580955..38581057,38586397..38586454,38588706..38588794,38592539..38592997

Genome context

Sequence
000001 CTTCTACCCG GGGGCTCCAG TGCATCTGGC TTTATCTCTG GGGTGCTTCC ATACAAAGGG GACAGAAGAG ATGATGGAAG 000080
000081 GCCTCAGTAC TGCAGGAGGG GAGACGGATG TCATCTACAA TCACACAATA CATGGGAGGT CACAGGGTCT CGGGCCGGGT 000160
000161 GCAGTGGCTC ACTCCTCTAA TCTCAGCACT TTGGGAAGCC GAGGTCTACA ACATCCAGAG CAGCCACATT GCAAGTGCTC 000240
000241 AGTAGCCACA TGTGGCTGGC ACATGTGGCC CATGGCAACT GTGCTGGACA TGAACGCCAG GGTGACGTAA CAATTCAAAC 000320
000321 CATGAAGAGG TAACAGAGCC CTTCGCGCGT CTCAACACGT GGTGACGCAG CTAATAACCT GTGATGCATA CATGGGAACA 000400
000401 AATGCATAGA AAAACTTGTC AATGACACGG CAAAGTAAAA CCCAAATGAA GCGAGGTGAA AGAATGGGCT GCAGCGCAGG 000480
000481 CAAAACTGCA CCACGTTACA GACTGCTCGC CTGGGATGGA ACGGTGGGGA GGTGCGCAGA CGGATGGACA AGCGCCTGGC 000560
000561 AAAATGGATT TCTTTTCCTA GACTGCTAAT GCTACTAACA GTTCCCTCCT CACAGGGTCG CTATAACGAG GTAACATACA 000640
000641 GCACTTAGAA GACGGCCTGA CCCAGAATAA CACTAATGTT CACATGGCTG CGAGTCTCAG ACCAAAATCA ATAGCCGGTA 000720
000721 TCTACTGAAA CTGCAGCAAG GCGAAACCAC G
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Predicted Small Protein

Name ENST00000585273.1_smProtein_107:244
Length 46
Molecular weight 5005.6006
Aromaticity 0.0888888888889
Instability index 72.88
Isoelectric point 6.69757080078
Runs 8
Runs residual 0.0155303030303
Runs probability 0.0289922275217
Amino acid sequence MSSTITQYMGGHRVSGRVQWLTPLISALWEAEVYNIQSSHIASAQ
Secondary structure LLLLLEELLLLLEELLLEEHHHHHHHHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -