Difference between revisions of "NONHSAT139281"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CTGGGCTGAGTTTGCAGGGCTGCTCCCCTCACCCAACCCCTTCGAGTCCTCCGCGGGCTCCGCCCCACCCGGCCCGTGGGGGAGGTTCCGTCCCGCCGCCTTCGCCCGCGCGCTGCACTCGCGGACGATCTCTGCTCGCCTTGGGCGCGCCGTGGCGCGCGGGGCCGTGCTGGCGCTGCGGCTCCTCGGCCTGCTCCGCCGTCTGGTGGCCGCCCCGGGCTGACTTTGACTTAGCGATGCCTTTCCTGATGGAGGAAACAGTGACCCAGCACCACCTAATGCCCCCAAACCAAAGCCAGATCCAAACCCCAACCGACCTGGTTTCACTGGTGACCCAGCACCACCTAATCCCCCCAAACCAAAGCCAGATCCAAATCCCAACTGACCTGGTTTCACTGATAAGAGCCTCTAACCCTACGGGGTGGTCTCTATGTTGTTTACCTGGCAGTGATGTCCGTGTCATCTGAGAAGAGGAGATTTCAGGGGCTGACTTTGACTTAGCAGATGCCTTTCGTGATGGAGGAAATAACGACCCAGCACCTCTTAATTCACCCAAGCTGAAGCCAAATGCGAACCCTGAGCAGCCTGGATTCATTGGGGATGACTTTGACTTAGCAGATGCCTTACATGACAAAGGAAACTACGAGCCAGCACCACTGAACCCACCCAAACCAAAGCCAAATCCAAACCCCAAGCAGCCTGATTCCACCGGGGATGACTTTGATTTCACAGATGTTTCTTCATGGTGAACGAAACAGGGAGTTGCCTCGATTCTGATGTGTTTGCTTCGGTGCTCTGTGTATTGTATTCATCCCACTCTTCAATTCATAAACTCTGGAGATTCTTCAATTCACTGGGCAAACCATATGCCTAAGTCTATCCTCTGATGGAGGCTCGTACATGCAAAATCCAATAGCAACCTGGGAAGATTTCAGTCAAGACCCAAGAGGAGGCTGGCATCAGGCTCTCGGTCACCGATCTTCACATTCAGGTTTCCTGATGCACTTTGCGACTCTTTGGGCAACCTCTGGACTCCTTGTTCCCAGGGTCCACATTTAGTTTTATCTTTACTGCATTGCTTTTATGAAAAAGAATAAAATTGGATGAAACAGA</dnaseq>| | sequence = <dnaseq>CTGGGCTGAGTTTGCAGGGCTGCTCCCCTCACCCAACCCCTTCGAGTCCTCCGCGGGCTCCGCCCCACCCGGCCCGTGGGGGAGGTTCCGTCCCGCCGCCTTCGCCCGCGCGCTGCACTCGCGGACGATCTCTGCTCGCCTTGGGCGCGCCGTGGCGCGCGGGGCCGTGCTGGCGCTGCGGCTCCTCGGCCTGCTCCGCCGTCTGGTGGCCGCCCCGGGCTGACTTTGACTTAGCGATGCCTTTCCTGATGGAGGAAACAGTGACCCAGCACCACCTAATGCCCCCAAACCAAAGCCAGATCCAAACCCCAACCGACCTGGTTTCACTGGTGACCCAGCACCACCTAATCCCCCCAAACCAAAGCCAGATCCAAATCCCAACTGACCTGGTTTCACTGATAAGAGCCTCTAACCCTACGGGGTGGTCTCTATGTTGTTTACCTGGCAGTGATGTCCGTGTCATCTGAGAAGAGGAGATTTCAGGGGCTGACTTTGACTTAGCAGATGCCTTTCGTGATGGAGGAAATAACGACCCAGCACCTCTTAATTCACCCAAGCTGAAGCCAAATGCGAACCCTGAGCAGCCTGGATTCATTGGGGATGACTTTGACTTAGCAGATGCCTTACATGACAAAGGAAACTACGAGCCAGCACCACTGAACCCACCCAAACCAAAGCCAAATCCAAACCCCAAGCAGCCTGATTCCACCGGGGATGACTTTGATTTCACAGATGTTTCTTCATGGTGAACGAAACAGGGAGTTGCCTCGATTCTGATGTGTTTGCTTCGGTGCTCTGTGTATTGTATTCATCCCACTCTTCAATTCATAAACTCTGGAGATTCTTCAATTCACTGGGCAAACCATATGCCTAAGTCTATCCTCTGATGGAGGCTCGTACATGCAAAATCCAATAGCAACCTGGGAAGATTTCAGTCAAGACCCAAGAGGAGGCTGGCATCAGGCTCTCGGTCACCGATCTTCACATTCAGGTTTCCTGATGCACTTTGCGACTCTTTGGGCAACCTCTGGACTCCTTGTTCCCAGGGTCCACATTTAGTTTTATCTTTACTGCATTGCTTTTATGAAAAAGAATAAAATTGGATGAAACAGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG055652]] |
Revision as of 05:57, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT139281 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1113 nt |
| Genomic location |
chrY+:2477306..2506370 |
| Exon number |
10 |
| Exons |
2477306..2477522,2479037..2479079,2480191..2480259,2483857..2484010,2486781..2486825,2487470..2487538,2490731..2490775,2491426..2491494,2494638..2494683,2506015..2506370 |
| Genome context |
|
| Sequence |
000001 CTGGGCTGAG TTTGCAGGGC TGCTCCCCTC ACCCAACCCC TTCGAGTCCT CCGCGGGCTC CGCCCCACCC GGCCCGTGGG 000080
000081 GGAGGTTCCG TCCCGCCGCC TTCGCCCGCG CGCTGCACTC GCGGACGATC TCTGCTCGCC TTGGGCGCGC CGTGGCGCGC 000160 000161 GGGGCCGTGC TGGCGCTGCG GCTCCTCGGC CTGCTCCGCC GTCTGGTGGC CGCCCCGGGC TGACTTTGAC TTAGCGATGC 000240 000241 CTTTCCTGAT GGAGGAAACA GTGACCCAGC ACCACCTAAT GCCCCCAAAC CAAAGCCAGA TCCAAACCCC AACCGACCTG 000320 000321 GTTTCACTGG TGACCCAGCA CCACCTAATC CCCCCAAACC AAAGCCAGAT CCAAATCCCA ACTGACCTGG TTTCACTGAT 000400 000401 AAGAGCCTCT AACCCTACGG GGTGGTCTCT ATGTTGTTTA CCTGGCAGTG ATGTCCGTGT CATCTGAGAA GAGGAGATTT 000480 000481 CAGGGGCTGA CTTTGACTTA GCAGATGCCT TTCGTGATGG AGGAAATAAC GACCCAGCAC CTCTTAATTC ACCCAAGCTG 000560 000561 AAGCCAAATG CGAACCCTGA GCAGCCTGGA TTCATTGGGG ATGACTTTGA CTTAGCAGAT GCCTTACATG ACAAAGGAAA 000640 000641 CTACGAGCCA GCACCACTGA ACCCACCCAA ACCAAAGCCA AATCCAAACC CCAAGCAGCC TGATTCCACC GGGGATGACT 000720 000721 TTGATTTCAC AGATGTTTCT TCATGGTGAA CGAAACAGGG AGTTGCCTCG ATTCTGATGT GTTTGCTTCG GTGCTCTGTG 000800 000801 TATTGTATTC ATCCCACTCT TCAATTCATA AACTCTGGAG ATTCTTCAAT TCACTGGGCA AACCATATGC CTAAGTCTAT 000880 000881 CCTCTGATGG AGGCTCGTAC ATGCAAAATC CAATAGCAAC CTGGGAAGAT TTCAGTCAAG ACCCAAGAGG AGGCTGGCAT 000960 000961 CAGGCTCTCG GTCACCGATC TTCACATTCA GGTTTCCTGA TGCACTTTGC GACTCTTTGG GCAACCTCTG GACTCCTTGT 001040 001041 TCCCAGGGTC CACATTTAGT TTTATCTTTA CTGCATTGCT TTTATGAAAA AGAATAAAAT TGGATGAAAC AGA |
Predicted Small Protein
| Name | NONHSAT139281_smProtein_236:466 |
| Length | 77 |
| Molecular weight | 8451.6687 |
| Aromaticity | 0.0263157894737 |
| Instability index | 48.1907894737 |
| Isoelectric point | 5.60296630859 |
| Runs | 13 |
| Runs residual | 0.0296430732002 |
| Runs probability | 0.045690486867 |
| Amino acid sequence | MPFLMEETVTQHHLMPPNQSQIQTPTDLVSLVTQHHLIPPNQSQIQIPTDLVSLIRASNP TGWSLCCLPGSDVRVI |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLEELLLLLLLEEELLLLLEEEEELLL LLLEEEELLLLLEEEL |
| PRMN | - |
| PiMo | - |
