Difference between revisions of "NONHSAT074908"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| Line 42: | Line 42: | ||
sequence = <dnaseq>GTAAGATTACAGCTTTTCTTTAAAAGGGATTGAGCTGGCTATAAATTGCAGTATAAATTCAGATTTATTCTGTTTCACCGTTTAATTCTTGGAAAAGACTACTCATAAAAATTCTCTAATGGCATTATTGGTATTATGCATTAAGAGCTAGAAAAATAGGTCAACATTTTAGACGTATTTCTGGTGGCGCATTTTGCTATTAGTCTACAAGGATTATAGCAGATCACTATCTTTAAATGACATTGCAACTTGAGGCTCAAATTCGATGATCCTGGGAAAGTTGAAATTTAGTGCCCTGTTTTGAGGTTAAACTATGGCTGCAAGTAATTTCTAGAAAACTGACATCCTGATAGACTTGAAAAATAAAAAAAAAAGAAAGAGGAAACAAATTAAAATTGTTCTATCAGGCTTTGCCAGGGTCTAGAAATCCTAATTTATAATGAAATTGGAGGTGAGCTAAGATAGCAATAGAATGAGAAGTTAGGAAAGGGAAGAAATTGACCAGGAACAGTGAATATACTGCTTACATTATCTTACATCAGAATTCAGGAGTCTCCAACATTCATTAACTAAATTCTCTCTTTTGTGTTTACTCTGATAGTTTTGTAGTTGTGATAATATTATAGATATAGTCTAGTTGTTGACATTTGGAGGTAAGAGTATCTCCAACCTGGGTCAGGTAGCAGTTTAGTAAAGTATTTTCTCTTCATTAAGACGAGAGGTGTTACCAAATGGAATAAGTATTTGACTTTTCTGTGTGACCACATGATATAGGTGTTAAATAGGTTTGTCTTCAGATGCAAACATCAGAAAACCTGACTAAAATCCCTCAGGATTGATGGGGTTTACTTTTTCTAAATAGTGCTAAGTCTGAAGGTAGGTGGCTCTGAGCATTTAGGGGTTTAGACATGTGAACTCTCCTTCCTGGTTGCAAGTAGCAATCCTGGCTTAATCAAGTTTATACTCAAGGCAGAAAGAAGAGAGAATGGATgacaaaagcttccccagaacccacatgtggagttttcctatgtctcattagccagaactgggttatgttggcaagcccttgctgaagcagagaccaggaaggtgaaGATTTAGTTTTTCTGCTCATACTGTGGAAGGTGAAAGGAATGGAGGTTAGGGAGGGTATAGAATTAGCAAGCCAAGAGTtcctatgtaatgccaacgtgtaagtaggatctataaatattaaatctaagaaaacaaactttagtagaacataccaagaaggactaactaatcatcacggctgcccagaactgcaatgggctccccagtaggtaattcattccctatcagagcatatgtttaaacactgggtgaatgagcatttgaccgatttactgtggagaagatttaaacattagatagataagtggttgaactttatgtcttcaaagttgtcttcaaatcctcaggattttatgatactCTGTAAGCATTCCAATTGCTTGCAATTTGAAAATTGTTTTTTCTTTGTGGTTCGCTTTTCTGTCAaagtgtctgttcatatcctttgcccactttttgatggggttgttttttaaactttaatgttcacatgtcatcccaggatcttgttaaaatatagacctgagtcaataggtctggggggggatctgagattctgcatatccaataa</dnaseq>| | sequence = <dnaseq>GTAAGATTACAGCTTTTCTTTAAAAGGGATTGAGCTGGCTATAAATTGCAGTATAAATTCAGATTTATTCTGTTTCACCGTTTAATTCTTGGAAAAGACTACTCATAAAAATTCTCTAATGGCATTATTGGTATTATGCATTAAGAGCTAGAAAAATAGGTCAACATTTTAGACGTATTTCTGGTGGCGCATTTTGCTATTAGTCTACAAGGATTATAGCAGATCACTATCTTTAAATGACATTGCAACTTGAGGCTCAAATTCGATGATCCTGGGAAAGTTGAAATTTAGTGCCCTGTTTTGAGGTTAAACTATGGCTGCAAGTAATTTCTAGAAAACTGACATCCTGATAGACTTGAAAAATAAAAAAAAAAGAAAGAGGAAACAAATTAAAATTGTTCTATCAGGCTTTGCCAGGGTCTAGAAATCCTAATTTATAATGAAATTGGAGGTGAGCTAAGATAGCAATAGAATGAGAAGTTAGGAAAGGGAAGAAATTGACCAGGAACAGTGAATATACTGCTTACATTATCTTACATCAGAATTCAGGAGTCTCCAACATTCATTAACTAAATTCTCTCTTTTGTGTTTACTCTGATAGTTTTGTAGTTGTGATAATATTATAGATATAGTCTAGTTGTTGACATTTGGAGGTAAGAGTATCTCCAACCTGGGTCAGGTAGCAGTTTAGTAAAGTATTTTCTCTTCATTAAGACGAGAGGTGTTACCAAATGGAATAAGTATTTGACTTTTCTGTGTGACCACATGATATAGGTGTTAAATAGGTTTGTCTTCAGATGCAAACATCAGAAAACCTGACTAAAATCCCTCAGGATTGATGGGGTTTACTTTTTCTAAATAGTGCTAAGTCTGAAGGTAGGTGGCTCTGAGCATTTAGGGGTTTAGACATGTGAACTCTCCTTCCTGGTTGCAAGTAGCAATCCTGGCTTAATCAAGTTTATACTCAAGGCAGAAAGAAGAGAGAATGGATgacaaaagcttccccagaacccacatgtggagttttcctatgtctcattagccagaactgggttatgttggcaagcccttgctgaagcagagaccaggaaggtgaaGATTTAGTTTTTCTGCTCATACTGTGGAAGGTGAAAGGAATGGAGGTTAGGGAGGGTATAGAATTAGCAAGCCAAGAGTtcctatgtaatgccaacgtgtaagtaggatctataaatattaaatctaagaaaacaaactttagtagaacataccaagaaggactaactaatcatcacggctgcccagaactgcaatgggctccccagtaggtaattcattccctatcagagcatatgtttaaacactgggtgaatgagcatttgaccgatttactgtggagaagatttaaacattagatagataagtggttgaactttatgtcttcaaagttgtcttcaaatcctcaggattttatgatactCTGTAAGCATTCCAATTGCTTGCAATTTGAAAATTGTTTTTTCTTTGTGGTTCGCTTTTCTGTCAaagtgtctgttcatatcctttgcccactttttgatggggttgttttttaaactttaatgttcacatgtcatcccaggatcttgttaaaatatagacctgagtcaataggtctggggggggatctgagattctgcatatccaataa</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG029517]] |
Revision as of 05:57, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT074908 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1669 nt |
| Genomic location |
chr2+:150480546..150493354 |
| Exon number |
2 |
| Exons |
150480546..150482069,150493210..150493354 |
| Genome context |
|
| Sequence |
000001 GTAAGATTAC AGCTTTTCTT TAAAAGGGAT TGAGCTGGCT ATAAATTGCA GTATAAATTC AGATTTATTC TGTTTCACCG 000080
000081 TTTAATTCTT GGAAAAGACT ACTCATAAAA ATTCTCTAAT GGCATTATTG GTATTATGCA TTAAGAGCTA GAAAAATAGG 000160 000161 TCAACATTTT AGACGTATTT CTGGTGGCGC ATTTTGCTAT TAGTCTACAA GGATTATAGC AGATCACTAT CTTTAAATGA 000240 000241 CATTGCAACT TGAGGCTCAA ATTCGATGAT CCTGGGAAAG TTGAAATTTA GTGCCCTGTT TTGAGGTTAA ACTATGGCTG 000320 000321 CAAGTAATTT CTAGAAAACT GACATCCTGA TAGACTTGAA AAATAAAAAA AAAAGAAAGA GGAAACAAAT TAAAATTGTT 000400 000401 CTATCAGGCT TTGCCAGGGT CTAGAAATCC TAATTTATAA TGAAATTGGA GGTGAGCTAA GATAGCAATA GAATGAGAAG 000480 000481 TTAGGAAAGG GAAGAAATTG ACCAGGAACA GTGAATATAC TGCTTACATT ATCTTACATC AGAATTCAGG AGTCTCCAAC 000560 000561 ATTCATTAAC TAAATTCTCT CTTTTGTGTT TACTCTGATA GTTTTGTAGT TGTGATAATA TTATAGATAT AGTCTAGTTG 000640 000641 TTGACATTTG GAGGTAAGAG TATCTCCAAC CTGGGTCAGG TAGCAGTTTA GTAAAGTATT TTCTCTTCAT TAAGACGAGA 000720 000721 GGTGTTACCA AATGGAATAA GTATTTGACT TTTCTGTGTG ACCACATGAT ATAGGTGTTA AATAGGTTTG TCTTCAGATG 000800 000801 CAAACATCAG AAAACCTGAC TAAAATCCCT CAGGATTGAT GGGGTTTACT TTTTCTAAAT AGTGCTAAGT CTGAAGGTAG 000880 000881 GTGGCTCTGA GCATTTAGGG GTTTAGACAT GTGAACTCTC CTTCCTGGTT GCAAGTAGCA ATCCTGGCTT AATCAAGTTT 000960 000961 ATACTCAAGG CAGAAAGAAG AGAGAATGGA Tgacaaaagc ttccccagaa cccacatgtg gagttttcct atgtctcatt 001040 001041 agccagaact gggttatgtt ggcaagccct tgctgaagca gagaccagga aggtgaaGAT TTAGTTTTTC TGCTCATACT 001120 001121 GTGGAAGGTG AAAGGAATGG AGGTTAGGGA GGGTATAGAA TTAGCAAGCC AAGAGTtcct atgtaatgcc aacgtgtaag 001200 001201 taggatctat aaatattaaa tctaagaaaa caaactttag tagaacatac caagaaggac taactaatca tcacggctgc 001280 001281 ccagaactgc aatgggctcc ccagtaggta attcattccc tatcagagca tatgtttaaa cactgggtga atgagcattt 001360 001361 gaccgattta ctgtggagaa gatttaaaca ttagatagat aagtggttga actttatgtc ttcaaagttg tcttcaaatc 001440 001441 ctcaggattt tatgatactC TGTAAGCATT CCAATTGCTT GCAATTTGAA AATTGTTTTT TCTTTGTGGT TCGCTTTTCT 001520 001521 GTCAaagtgt ctgttcatat cctttgccca ctttttgatg gggttgtttt ttaaacttta atgttcacat gtcatcccag 001600 001601 gatcttgtta aaatatagac ctgagtcaat aggtctgggg ggggatctga gattctgcat atccaataa |
Predicted Small Protein
| Name | NONHSAT074908_smProtein_1415:1573 |
| Length | 53 |
| Molecular weight | 5990.0485 |
| Aromaticity | 0.153846153846 |
| Instability index | 56.6 |
| Isoelectric point | 7.69866943359 |
| Runs | 8 |
| Runs residual | 0.00347674923946 |
| Runs probability | 0.036389330507 |
| Amino acid sequence | MSSKLSSNPQDFMILCKHSNCLQFENCFFFVVRFSVKVSVHILCPLFDGVVF |
| Secondary structure | LLLLLLLLHHHEEEEEELLLLLLEEEEEEEEEEEEEEEEEEEEELLLLLEEL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooooo |
