Difference between revisions of "NONHSAT118814"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGTGTTGGGGACGGAGCCGTGGATACACCCATACTCAACAGGCAGAGGGAATAGATATTCGACGGGGGACCGGGGTGTCAACAGATGTATCCGAGTTCATGCGTGGCAGGGAGCTGGCGGCGGGACCCGTCCCTCCAGCTGGCTCTCCAACCCCAAGCCTGCATTACGACCACGGCAAAATGCCAGAAGCCCAGAGAAGCGGGGTTTCTGAAGCGGATCGTTTGTTCAGCCCGAGTGCGTGGGGCAGGAACACACCTGGAGGTCATTAAAGAGAAGTCTTCACGGGGCACTCAAGGCACACTGCAAAACAACTTTTTATTTAAAAGGCCAATAATGAGAATAATGAGTTGCACAAGAATGAAAACCTTATCCCTTCCAAAAGATCGGCCTATACATTATGTATAAAGTTAGAATAATTCTAAATACAAAATGCCAAAGACCAGCGGGTCCACTCCTTCCTCTCCTAAGCCATCTTGACAGTTTCACATTTCAGCTTCCAGACGTCATTTCTGTTGCTTTTAAGGGTGCTTACCCAGCCGTGGTCTGTACCAGACAGGGTAGTTGGCACAGCGTAGGCACTGCCAGCAGGCCCTTGGGAGCTTGGCGAGGTGGGAGCCTTGAGAAATAGCTGGCTCGGACCCATGGCGGGGTTTGTGTGTCAACTCCCTGGTCCTCAGAGAATCCGAGCCACGGGAGAGCAAACGCTGCTTCCAAAACCAAAGGAGGAATTTTGCAATCGTTTAGACGGGTTATAATAGAATCTCATTCAGATCTTGAAGGTTATCGGTGCTTTCTGCAGGTTTTTATTCCTCAAAAATGCAGCCAAGCTTTGCTGTGCTTATCTTGGTGGATCTGAGCTAGGTTGGGCTATCTTTTCCTAATTCAATTGCCTTTTTTTTGCAAGGAAGGGGGTTTCTGGTCCATCGGAGGGATCAAGGGCATGGTCCTCACGTCTCGTCAGGAGACAAAAATAGACATTCAGCAGACAGACCACAGCCAGCGCATGCGACCAGCGTCGTTTGGCTATTTTAGTCTCTTCTTAATACACAGACAAACGAGCAAAGAAAAAGCTACTTTGTCCAACACCGGGCCCTGGGTTGGAGTTTAGCCCTGCTTGGCTCTGCCCGCTAGTCTCAGTCAGGTCACTCACCCCAGGCCTGCGGGAACGGTGGTCTTGGTGGTCTTCTCTGGCCCTTCCACCTCTTCTGCCTTGTGGGGACCACCCAAGCCCTCTCCCGACTTGCCCAGAGGCTGCACGCCTCTCTGGCATCACAGTCCGCACGGAGCCTGGCTGTAAGGCTCCACTGAAATCCCCCCGGCGCTGGCTTCGTGCCCCAGGCACACCCACCTCACTTCTGCCTCTTTTCTGCTGGTTTCTGGCCTGTTTGGTCCCAGCCCCTCCCTGCACTCTCTCCGCAGCTGTCTGGTGGGTGATGTGAACCAAGGGACACCCAGGGTCATGGCACTGCCTGGATTCAGTTTGGTAATCGTCGGCAGTCTGTCCCTGGCTTCTGAGCCTGGGGCCTCCTCCTCTTTCTCCCCATCCTGGATGAGCAGGACACGCTGGGGAGACAGCGTCCTACAAAGGCCTCCTAAGAGCTGTGCCCTGTGCCAGGAAAGCCTCCTGTATCTCCAAGGATGTCCCTGGAGCCCTCCAGCTGGTGCCTCTGCTGAGGTCTGTGAGCAGCGGGAATAGGCCTCTAGGGGAGGAGTTGGGGACAGGCCTCTAGGGGAGAGCACACCTCCGGGTACTGCACCTGTGGCTCACCAGCCACCTGCACGGGGCCAGCTTCAGCCTCAGCAGTGTCAGCTCAACAGACGTGACTGCTGTCAAC</dnaseq>| | sequence = <dnaseq>GGTGTTGGGGACGGAGCCGTGGATACACCCATACTCAACAGGCAGAGGGAATAGATATTCGACGGGGGACCGGGGTGTCAACAGATGTATCCGAGTTCATGCGTGGCAGGGAGCTGGCGGCGGGACCCGTCCCTCCAGCTGGCTCTCCAACCCCAAGCCTGCATTACGACCACGGCAAAATGCCAGAAGCCCAGAGAAGCGGGGTTTCTGAAGCGGATCGTTTGTTCAGCCCGAGTGCGTGGGGCAGGAACACACCTGGAGGTCATTAAAGAGAAGTCTTCACGGGGCACTCAAGGCACACTGCAAAACAACTTTTTATTTAAAAGGCCAATAATGAGAATAATGAGTTGCACAAGAATGAAAACCTTATCCCTTCCAAAAGATCGGCCTATACATTATGTATAAAGTTAGAATAATTCTAAATACAAAATGCCAAAGACCAGCGGGTCCACTCCTTCCTCTCCTAAGCCATCTTGACAGTTTCACATTTCAGCTTCCAGACGTCATTTCTGTTGCTTTTAAGGGTGCTTACCCAGCCGTGGTCTGTACCAGACAGGGTAGTTGGCACAGCGTAGGCACTGCCAGCAGGCCCTTGGGAGCTTGGCGAGGTGGGAGCCTTGAGAAATAGCTGGCTCGGACCCATGGCGGGGTTTGTGTGTCAACTCCCTGGTCCTCAGAGAATCCGAGCCACGGGAGAGCAAACGCTGCTTCCAAAACCAAAGGAGGAATTTTGCAATCGTTTAGACGGGTTATAATAGAATCTCATTCAGATCTTGAAGGTTATCGGTGCTTTCTGCAGGTTTTTATTCCTCAAAAATGCAGCCAAGCTTTGCTGTGCTTATCTTGGTGGATCTGAGCTAGGTTGGGCTATCTTTTCCTAATTCAATTGCCTTTTTTTTGCAAGGAAGGGGGTTTCTGGTCCATCGGAGGGATCAAGGGCATGGTCCTCACGTCTCGTCAGGAGACAAAAATAGACATTCAGCAGACAGACCACAGCCAGCGCATGCGACCAGCGTCGTTTGGCTATTTTAGTCTCTTCTTAATACACAGACAAACGAGCAAAGAAAAAGCTACTTTGTCCAACACCGGGCCCTGGGTTGGAGTTTAGCCCTGCTTGGCTCTGCCCGCTAGTCTCAGTCAGGTCACTCACCCCAGGCCTGCGGGAACGGTGGTCTTGGTGGTCTTCTCTGGCCCTTCCACCTCTTCTGCCTTGTGGGGACCACCCAAGCCCTCTCCCGACTTGCCCAGAGGCTGCACGCCTCTCTGGCATCACAGTCCGCACGGAGCCTGGCTGTAAGGCTCCACTGAAATCCCCCCGGCGCTGGCTTCGTGCCCCAGGCACACCCACCTCACTTCTGCCTCTTTTCTGCTGGTTTCTGGCCTGTTTGGTCCCAGCCCCTCCCTGCACTCTCTCCGCAGCTGTCTGGTGGGTGATGTGAACCAAGGGACACCCAGGGTCATGGCACTGCCTGGATTCAGTTTGGTAATCGTCGGCAGTCTGTCCCTGGCTTCTGAGCCTGGGGCCTCCTCCTCTTTCTCCCCATCCTGGATGAGCAGGACACGCTGGGGAGACAGCGTCCTACAAAGGCCTCCTAAGAGCTGTGCCCTGTGCCAGGAAAGCCTCCTGTATCTCCAAGGATGTCCCTGGAGCCCTCCAGCTGGTGCCTCTGCTGAGGTCTGTGAGCAGCGGGAATAGGCCTCTAGGGGAGGAGTTGGGGACAGGCCTCTAGGGGAGAGCACACCTCCGGGTACTGCACCTGTGGCTCACCAGCCACCTGCACGGGGCCAGCTTCAGCCTCAGCAGTGTCAGCTCAACAGACGTGACTGCTGTCAAC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG046801]] |
Revision as of 06:02, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118814 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1835 nt |
Genomic location |
chr7-:2652824..2657331 |
Exon number |
2 |
Exons |
2652824..2654610,2657284..2657331 |
Genome context |
|
Sequence |
000001 GGTGTTGGGG ACGGAGCCGT GGATACACCC ATACTCAACA GGCAGAGGGA ATAGATATTC GACGGGGGAC CGGGGTGTCA 000080
000081 ACAGATGTAT CCGAGTTCAT GCGTGGCAGG GAGCTGGCGG CGGGACCCGT CCCTCCAGCT GGCTCTCCAA CCCCAAGCCT 000160 000161 GCATTACGAC CACGGCAAAA TGCCAGAAGC CCAGAGAAGC GGGGTTTCTG AAGCGGATCG TTTGTTCAGC CCGAGTGCGT 000240 000241 GGGGCAGGAA CACACCTGGA GGTCATTAAA GAGAAGTCTT CACGGGGCAC TCAAGGCACA CTGCAAAACA ACTTTTTATT 000320 000321 TAAAAGGCCA ATAATGAGAA TAATGAGTTG CACAAGAATG AAAACCTTAT CCCTTCCAAA AGATCGGCCT ATACATTATG 000400 000401 TATAAAGTTA GAATAATTCT AAATACAAAA TGCCAAAGAC CAGCGGGTCC ACTCCTTCCT CTCCTAAGCC ATCTTGACAG 000480 000481 TTTCACATTT CAGCTTCCAG ACGTCATTTC TGTTGCTTTT AAGGGTGCTT ACCCAGCCGT GGTCTGTACC AGACAGGGTA 000560 000561 GTTGGCACAG CGTAGGCACT GCCAGCAGGC CCTTGGGAGC TTGGCGAGGT GGGAGCCTTG AGAAATAGCT GGCTCGGACC 000640 000641 CATGGCGGGG TTTGTGTGTC AACTCCCTGG TCCTCAGAGA ATCCGAGCCA CGGGAGAGCA AACGCTGCTT CCAAAACCAA 000720 000721 AGGAGGAATT TTGCAATCGT TTAGACGGGT TATAATAGAA TCTCATTCAG ATCTTGAAGG TTATCGGTGC TTTCTGCAGG 000800 000801 TTTTTATTCC TCAAAAATGC AGCCAAGCTT TGCTGTGCTT ATCTTGGTGG ATCTGAGCTA GGTTGGGCTA TCTTTTCCTA 000880 000881 ATTCAATTGC CTTTTTTTTG CAAGGAAGGG GGTTTCTGGT CCATCGGAGG GATCAAGGGC ATGGTCCTCA CGTCTCGTCA 000960 000961 GGAGACAAAA ATAGACATTC AGCAGACAGA CCACAGCCAG CGCATGCGAC CAGCGTCGTT TGGCTATTTT AGTCTCTTCT 001040 001041 TAATACACAG ACAAACGAGC AAAGAAAAAG CTACTTTGTC CAACACCGGG CCCTGGGTTG GAGTTTAGCC CTGCTTGGCT 001120 001121 CTGCCCGCTA GTCTCAGTCA GGTCACTCAC CCCAGGCCTG CGGGAACGGT GGTCTTGGTG GTCTTCTCTG GCCCTTCCAC 001200 001201 CTCTTCTGCC TTGTGGGGAC CACCCAAGCC CTCTCCCGAC TTGCCCAGAG GCTGCACGCC TCTCTGGCAT CACAGTCCGC 001280 001281 ACGGAGCCTG GCTGTAAGGC TCCACTGAAA TCCCCCCGGC GCTGGCTTCG TGCCCCAGGC ACACCCACCT CACTTCTGCC 001360 001361 TCTTTTCTGC TGGTTTCTGG CCTGTTTGGT CCCAGCCCCT CCCTGCACTC TCTCCGCAGC TGTCTGGTGG GTGATGTGAA 001440 001441 CCAAGGGACA CCCAGGGTCA TGGCACTGCC TGGATTCAGT TTGGTAATCG TCGGCAGTCT GTCCCTGGCT TCTGAGCCTG 001520 001521 GGGCCTCCTC CTCTTTCTCC CCATCCTGGA TGAGCAGGAC ACGCTGGGGA GACAGCGTCC TACAAAGGCC TCCTAAGAGC 001600 001601 TGTGCCCTGT GCCAGGAAAG CCTCCTGTAT CTCCAAGGAT GTCCCTGGAG CCCTCCAGCT GGTGCCTCTG CTGAGGTCTG 001680 001681 TGAGCAGCGG GAATAGGCCT CTAGGGGAGG AGTTGGGGAC AGGCCTCTAG GGGAGAGCAC ACCTCCGGGT ACTGCACCTG 001760 001761 TGGCTCACCA GCCACCTGCA CGGGGCCAGC TTCAGCCTCA GCAGTGTCAG CTCAACAGAC GTGACTGCTG TCAAC |
Predicted Small Protein
Name | NONHSAT118814_smProtein_98:268 |
Length | 57 |
Molecular weight | 5879.4373 |
Aromaticity | 0.0535714285714 |
Instability index | 78.2285714286 |
Isoelectric point | 8.39923095703 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0238852297676 |
Amino acid sequence | MRGRELAAGPVPPAGSPTPSLHYDHGKMPEAQRSGVSEADRLFSPSAWGRNTPGGH |
Secondary structure | LLLEEELLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLHHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |