Difference between revisions of "NONHSAT050896"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>CGTGGCCCCAACCCCGCCTCCCTCCCCACCCCGCAATGGCAGAAGAAACTCAACAGAGCAAATTGGCCGCAGCAAAGAAAAAGGCAAAGGAGGACATCTGGACAGTGAGGAGGAGGCACCTCGGCCCATGCCAAGCAACCCAGAGGACCTGGAGAGCTGGGAGGCCACGGTGAAGTGGCCTTATGGACCTCCTGGAGGAGAAGGTGGACCTGAGGGAGCGAGCGGAGAAACTAGAACTTCGATTCATCCAGTACTGGAAAGACAGAAGTCATCAGTTAGTGGGAGGCCAGGGCACGGCAGGGGGAGCTGCAGGGCCGTCGGAGGGACCTCAGCGTCTGAGCCCTGTCCTCCTGCAGGAAAGTTCATCACCCTAGAACACAGCCAGGGGGCAGTGCCAAAGATGCGGCAACTGGAGGAGGACATCATCAGGCTGGCCCAGGACATGGAGGAGATGAAGGTAGGGTGTGCAACATCTCTGCAggggtgggggtgggcgtgagggtgggCGCCGGTAGATGCATAACAGCTGAGCACCCCTCCCTCCAGGTGAAGCTGCTGGAGCTGCTGGAGAAGATGTTGCGGCTTGTGGTGACTACAACGAGGGACACAGCAAATTCCCGGCCACTGCCCTGAAGCTTGCTGATGAGCCTGGTCCAGGAGCCCCAGCCCCCCAGGAGCTTGTGGGTGCTGATAAGCATGGTGATCTTTGTGAGGTGAGCCTCACTGACAGCGTGGAGCA</dnaseq>|
 
sequence = <dnaseq>CGTGGCCCCAACCCCGCCTCCCTCCCCACCCCGCAATGGCAGAAGAAACTCAACAGAGCAAATTGGCCGCAGCAAAGAAAAAGGCAAAGGAGGACATCTGGACAGTGAGGAGGAGGCACCTCGGCCCATGCCAAGCAACCCAGAGGACCTGGAGAGCTGGGAGGCCACGGTGAAGTGGCCTTATGGACCTCCTGGAGGAGAAGGTGGACCTGAGGGAGCGAGCGGAGAAACTAGAACTTCGATTCATCCAGTACTGGAAAGACAGAAGTCATCAGTTAGTGGGAGGCCAGGGCACGGCAGGGGGAGCTGCAGGGCCGTCGGAGGGACCTCAGCGTCTGAGCCCTGTCCTCCTGCAGGAAAGTTCATCACCCTAGAACACAGCCAGGGGGCAGTGCCAAAGATGCGGCAACTGGAGGAGGACATCATCAGGCTGGCCCAGGACATGGAGGAGATGAAGGTAGGGTGTGCAACATCTCTGCAggggtgggggtgggcgtgagggtgggCGCCGGTAGATGCATAACAGCTGAGCACCCCTCCCTCCAGGTGAAGCTGCTGGAGCTGCTGGAGAAGATGTTGCGGCTTGTGGTGACTACAACGAGGGACACAGCAAATTCCCGGCCACTGCCCTGAAGCTTGCTGATGAGCCTGGTCCAGGAGCCCCAGCCCCCCAGGAGCTTGTGGGTGCTGATAAGCATGGTGATCTTTGTGAGGTGAGCCTCACTGACAGCGTGGAGCA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG018079]]

Revision as of 06:10, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT050896

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

739 nt

Genomic location

chr15+:100331332..100333052

Exon number

4

Exons

100331332..100331420,100331767..100331850,100332401..100332929,100333016..100333052

Genome context

Sequence
000001 CGTGGCCCCA ACCCCGCCTC CCTCCCCACC CCGCAATGGC AGAAGAAACT CAACAGAGCA AATTGGCCGC AGCAAAGAAA 000080
000081 AAGGCAAAGG AGGACATCTG GACAGTGAGG AGGAGGCACC TCGGCCCATG CCAAGCAACC CAGAGGACCT GGAGAGCTGG 000160
000161 GAGGCCACGG TGAAGTGGCC TTATGGACCT CCTGGAGGAG AAGGTGGACC TGAGGGAGCG AGCGGAGAAA CTAGAACTTC 000240
000241 GATTCATCCA GTACTGGAAA GACAGAAGTC ATCAGTTAGT GGGAGGCCAG GGCACGGCAG GGGGAGCTGC AGGGCCGTCG 000320
000321 GAGGGACCTC AGCGTCTGAG CCCTGTCCTC CTGCAGGAAA GTTCATCACC CTAGAACACA GCCAGGGGGC AGTGCCAAAG 000400
000401 ATGCGGCAAC TGGAGGAGGA CATCATCAGG CTGGCCCAGG ACATGGAGGA GATGAAGGTA GGGTGTGCAA CATCTCTGCA 000480
000481 ggggtggggg tgggcgtgag ggtgggCGCC GGTAGATGCA TAACAGCTGA GCACCCCTCC CTCCAGGTGA AGCTGCTGGA 000560
000561 GCTGCTGGAG AAGATGTTGC GGCTTGTGGT GACTACAACG AGGGACACAG CAAATTCCCG GCCACTGCCC TGAAGCTTGC 000640
000641 TGATGAGCCT GGTCCAGGAG CCCCAGCCCC CCAGGAGCTT GTGGGTGCTG ATAAGCATGG TGATCTTTGT GAGGTGAGCC 000720
000721 TCACTGACAG CGTGGAGCA
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Predicted Small Protein

Name NONHSAT050896_smProtein_182:373
Length 64
Molecular weight 6962.7273
Aromaticity 0.047619047619
Instability index 62.4396825397
Isoelectric point 5.24285888672
Runs 9
Runs residual 0.00210560414642
Runs probability 0.00835148874363
Amino acid sequence MDLLEEKVDLRERAEKLELRFIQYWKDRSHQLVGGQGTAGGAAGPSEGPQRLSPVLLQES
SSP
Secondary structure LLHHHHLLLHHHHHHHHHHHHHHHHHHLLLLEELLLLLLLLLLLLLLLLLLLLLLEEEEL
LLL
PRMN -
PiMo -