Difference between revisions of "NONHSAT139794"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ATGGACACAGTGTTTGAAGAAAGTGATAAAGAAAGTACAGGAGGAGTTTTATCTTTGGAAGAAGAAATGGTCCTTGGGCACAGACACCATATGAGCTTTCCTTTCAGGATTCTCTGCTCAACTGTCCTCTGCTGTGGTGAGGCCACCTATGCTTTGTATATGTTTGAAATTAATTGAAAAGCTAGTGACAGATTCTGATATCATTTGCTATGAGCTTTGTTGATGTGGAGATAATTTTGGATCAAATTACTCTAACGTTTTTCAACAAAGACGTGAGGAGAAATAAAGCTGCATTACTTTTTTTGGCACATTCTTGCTTTAGGACCTATAACGAGGGCATTGCTGATGACATGTTCCTTCTTACCACTTGTGTATGCGGCCATTCACTGCAATACACTGGCCATCCATACCAGCAACGACTTTCCTGACATTAAGCTACAAGCGATAAAATTCATCTGTCATGATACGGTGTTCCTTGGTGATTATCTCACGTGTAGTGACTCTGGAATTTTTTCCTGCATCTCTGAAACAGAGGAGCCTACCATTACTATTAATCATATATTTTGTATTATTGTTGGCACCATGGCTGGAGTTTTGGAAAAGTGGAGCTCATCTTCATAACAACACAGAAAATAATTCCAGCATGGTGGGTACATACGGATGCTTACCTTAATCATGCTACTATATGCTGCTATCAACTTCTCTGGCTGGTCAGCACTGAAACTGCAGCTCTCAAATGAGGAAGTAATTGACAAGAGACTGAGGTGGGCCATAGAATCCTACACTACAGCTTCTAGTTTTTAGAAAATGTGATAATAATATTGATATTTATGTTCGTTGGAGGGAAAATTTCACTGAAGTCTTGTGACTCATTAATTGCCATGTAGTTCATCATAACCTAACTATTAGCCATTGGCTTTATGCTCCTCTTCTGTCAGTATTTGCACCCAAGGTGGTCAAGAAAATTTTTGCGAGGACATACTGAAAATCATTCAGAAGCACTGTGATATTGTGTAAACATCTGGAGAAAACTCAATTAAAAGAATAAAAATAAGCAGCTGAGGAATTAATATCACTCATGGAGAAGGGTTGGATATTTTCAATAAAAAACATATG</dnaseq>| | sequence = <dnaseq>ATGGACACAGTGTTTGAAGAAAGTGATAAAGAAAGTACAGGAGGAGTTTTATCTTTGGAAGAAGAAATGGTCCTTGGGCACAGACACCATATGAGCTTTCCTTTCAGGATTCTCTGCTCAACTGTCCTCTGCTGTGGTGAGGCCACCTATGCTTTGTATATGTTTGAAATTAATTGAAAAGCTAGTGACAGATTCTGATATCATTTGCTATGAGCTTTGTTGATGTGGAGATAATTTTGGATCAAATTACTCTAACGTTTTTCAACAAAGACGTGAGGAGAAATAAAGCTGCATTACTTTTTTTGGCACATTCTTGCTTTAGGACCTATAACGAGGGCATTGCTGATGACATGTTCCTTCTTACCACTTGTGTATGCGGCCATTCACTGCAATACACTGGCCATCCATACCAGCAACGACTTTCCTGACATTAAGCTACAAGCGATAAAATTCATCTGTCATGATACGGTGTTCCTTGGTGATTATCTCACGTGTAGTGACTCTGGAATTTTTTCCTGCATCTCTGAAACAGAGGAGCCTACCATTACTATTAATCATATATTTTGTATTATTGTTGGCACCATGGCTGGAGTTTTGGAAAAGTGGAGCTCATCTTCATAACAACACAGAAAATAATTCCAGCATGGTGGGTACATACGGATGCTTACCTTAATCATGCTACTATATGCTGCTATCAACTTCTCTGGCTGGTCAGCACTGAAACTGCAGCTCTCAAATGAGGAAGTAATTGACAAGAGACTGAGGTGGGCCATAGAATCCTACACTACAGCTTCTAGTTTTTAGAAAATGTGATAATAATATTGATATTTATGTTCGTTGGAGGGAAAATTTCACTGAAGTCTTGTGACTCATTAATTGCCATGTAGTTCATCATAACCTAACTATTAGCCATTGGCTTTATGCTCCTCTTCTGTCAGTATTTGCACCCAAGGTGGTCAAGAAAATTTTTGCGAGGACATACTGAAAATCATTCAGAAGCACTGTGATATTGTGTAAACATCTGGAGAAAACTCAATTAAAAGAATAAAAATAAGCAGCTGAGGAATTAATATCACTCATGGAGAAGGGTTGGATATTTTCAATAAAAAACATATG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG055999]] |
Revision as of 06:12, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT139794 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1116 nt |
| Genomic location |
chrY+:28089415..28100299 |
| Exon number |
2 |
| Exons |
28089415..28089750,28099520..28100299 |
| Genome context |
|
| Sequence |
000001 ATGGACACAG TGTTTGAAGA AAGTGATAAA GAAAGTACAG GAGGAGTTTT ATCTTTGGAA GAAGAAATGG TCCTTGGGCA 000080
000081 CAGACACCAT ATGAGCTTTC CTTTCAGGAT TCTCTGCTCA ACTGTCCTCT GCTGTGGTGA GGCCACCTAT GCTTTGTATA 000160 000161 TGTTTGAAAT TAATTGAAAA GCTAGTGACA GATTCTGATA TCATTTGCTA TGAGCTTTGT TGATGTGGAG ATAATTTTGG 000240 000241 ATCAAATTAC TCTAACGTTT TTCAACAAAG ACGTGAGGAG AAATAAAGCT GCATTACTTT TTTTGGCACA TTCTTGCTTT 000320 000321 AGGACCTATA ACGAGGGCAT TGCTGATGAC ATGTTCCTTC TTACCACTTG TGTATGCGGC CATTCACTGC AATACACTGG 000400 000401 CCATCCATAC CAGCAACGAC TTTCCTGACA TTAAGCTACA AGCGATAAAA TTCATCTGTC ATGATACGGT GTTCCTTGGT 000480 000481 GATTATCTCA CGTGTAGTGA CTCTGGAATT TTTTCCTGCA TCTCTGAAAC AGAGGAGCCT ACCATTACTA TTAATCATAT 000560 000561 ATTTTGTATT ATTGTTGGCA CCATGGCTGG AGTTTTGGAA AAGTGGAGCT CATCTTCATA ACAACACAGA AAATAATTCC 000640 000641 AGCATGGTGG GTACATACGG ATGCTTACCT TAATCATGCT ACTATATGCT GCTATCAACT TCTCTGGCTG GTCAGCACTG 000720 000721 AAACTGCAGC TCTCAAATGA GGAAGTAATT GACAAGAGAC TGAGGTGGGC CATAGAATCC TACACTACAG CTTCTAGTTT 000800 000801 TTAGAAAATG TGATAATAAT ATTGATATTT ATGTTCGTTG GAGGGAAAAT TTCACTGAAG TCTTGTGACT CATTAATTGC 000880 000881 CATGTAGTTC ATCATAACCT AACTATTAGC CATTGGCTTT ATGCTCCTCT TCTGTCAGTA TTTGCACCCA AGGTGGTCAA 000960 000961 GAAAATTTTT GCGAGGACAT ACTGAAAATC ATTCAGAAGC ACTGTGATAT TGTGTAAACA TCTGGAGAAA ACTCAATTAA 001040 001041 AAGAATAAAA ATAAGCAGCT GAGGAATTAA TATCACTCAT GGAGAAGGGT TGGATATTTT CAATAAAAAA CATATG |
Predicted Small Protein
| Name | NONHSAT139794_smProtein_209:427 |
| Length | 73 |
| Molecular weight | 8318.4794 |
| Aromaticity | 0.125 |
| Instability index | 40.5277777778 |
| Isoelectric point | 6.22821044922 |
| Runs | 10 |
| Runs residual | 0.00202757502028 |
| Runs probability | 0.0436671966083 |
| Amino acid sequence | MSFVDVEIILDQITLTFFNKDVRRNKAALLFLAHSCFRTYNEGIADDMFLLTTCVCGHSL QYTGHPYQQRLS |
| Secondary structure | LLEELEEEEHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLEEEEEEELLLLL LLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
