Difference between revisions of "NONHSAT075569"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GTTGATTATAGCAACTACATGAGGACATATATTTAACAGTGAAATGAAGATACTTTATTTCAGGGGAAAAATGACTTTTAAGAGGCTCTAATTTTTTTTCTTGGCTTTGCACAGACAAAATCACCACATTTTGCTCAACCCTAATTTTGTCATTTATAAAATGAAACGTTTAGCCTAAATAATCTCTCAGGTCTCTTTCCAACTCGTACCATGAATCTGAGAGACCTGGAAAGGAAGTGGGACAACATTTCTGTTGTGAAGAAGGCAAGGCTGGTGATGTGGGCGTGAAGGTTAAAGATGCTGGCCCCTCATGACATTGGCGAACGTGGCCCTTCTTCCACCTGCTCAGCCAGAAACGCTACTGAGTGCAGACGTTTGTATACTAAGAGGTATTTGGGTGCATACGATTTAATCCTTAGCCTGATGAACTTATAAGTGTGAAGAGAAGCAAGACTGTTCACAAATTGCTAAAACAAAATATGATGCTACATTTACCCAACAAACCTAAGATTCTGTGTACAAAACATTGCAGTAGTATCACTGGAATTGTGTGTGGGCTGCTGTGAGTTCAGCGTCCTCTCAGAGCACCGTGGTTCCAAGTGGACGGACCTTAAAGGGTTCCATAATCAGGACAGGTTGAAAGAATAGTGAATGCCACACAAATGCCCCCACACCCTTGACCCTGTGCCACCAAAGGCAAAACCAAAAGACATTTCAATTGGGAAAATCGTGATGCTTGTCTCTTATTTTCTTTCTTTTATTATTATTAAGACACGATTATCATTCAGGATTCATGCTGTTTACAGTTTGACTACTTCATAGAAAAATGTGTCTATAAAACACCTGGTAGTTGTAAAAAGGCTTGGGTAGGGCCCAGAAAGCCAGATACATGCATGCTATTTATTCAGCTGCCGGGAGCCATTCCCTGTCTCCATACACCCAAGGATTGTCGGCGGTGGCGGGAAGCGCAGGCCCGGCGGGGAGGGGCCGCAGTGTGAAAAAACAACTGATGTGAAGAAAAGTAAATTCTGTGAAGCTGATGTCTCCAGTGACCTTCGAAAAGAAGTAGAAAATCATTATAAGCTTTCTTTTATTATTATTAAGACACGATTATCATTCAGGATTCATGCTGTTTACAGTTTGACTACTTCATAGAAAAATGTGTCTATAAAACACCTGGTAGTTGTAAAAAGGCTTGGGTAGGGCCCAGAAAGCCAGATACATGCATGCTATTTATTCAGCTGCCGGGAGCCATTCCCTGTCTCCATACACCCAAGGATTGTCTATCCTCTCCTAAATTTTATTTCTAATATTCTTGCTACATAGTCAGGTTAAAAAAATGAAACACAAAAAAATCAGGAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>GTTGATTATAGCAACTACATGAGGACATATATTTAACAGTGAAATGAAGATACTTTATTTCAGGGGAAAAATGACTTTTAAGAGGCTCTAATTTTTTTTCTTGGCTTTGCACAGACAAAATCACCACATTTTGCTCAACCCTAATTTTGTCATTTATAAAATGAAACGTTTAGCCTAAATAATCTCTCAGGTCTCTTTCCAACTCGTACCATGAATCTGAGAGACCTGGAAAGGAAGTGGGACAACATTTCTGTTGTGAAGAAGGCAAGGCTGGTGATGTGGGCGTGAAGGTTAAAGATGCTGGCCCCTCATGACATTGGCGAACGTGGCCCTTCTTCCACCTGCTCAGCCAGAAACGCTACTGAGTGCAGACGTTTGTATACTAAGAGGTATTTGGGTGCATACGATTTAATCCTTAGCCTGATGAACTTATAAGTGTGAAGAGAAGCAAGACTGTTCACAAATTGCTAAAACAAAATATGATGCTACATTTACCCAACAAACCTAAGATTCTGTGTACAAAACATTGCAGTAGTATCACTGGAATTGTGTGTGGGCTGCTGTGAGTTCAGCGTCCTCTCAGAGCACCGTGGTTCCAAGTGGACGGACCTTAAAGGGTTCCATAATCAGGACAGGTTGAAAGAATAGTGAATGCCACACAAATGCCCCCACACCCTTGACCCTGTGCCACCAAAGGCAAAACCAAAAGACATTTCAATTGGGAAAATCGTGATGCTTGTCTCTTATTTTCTTTCTTTTATTATTATTAAGACACGATTATCATTCAGGATTCATGCTGTTTACAGTTTGACTACTTCATAGAAAAATGTGTCTATAAAACACCTGGTAGTTGTAAAAAGGCTTGGGTAGGGCCCAGAAAGCCAGATACATGCATGCTATTTATTCAGCTGCCGGGAGCCATTCCCTGTCTCCATACACCCAAGGATTGTCGGCGGTGGCGGGAAGCGCAGGCCCGGCGGGGAGGGGCCGCAGTGTGAAAAAACAACTGATGTGAAGAAAAGTAAATTCTGTGAAGCTGATGTCTCCAGTGACCTTCGAAAAGAAGTAGAAAATCATTATAAGCTTTCTTTTATTATTATTAAGACACGATTATCATTCAGGATTCATGCTGTTTACAGTTTGACTACTTCATAGAAAAATGTGTCTATAAAACACCTGGTAGTTGTAAAAAGGCTTGGGTAGGGCCCAGAAAGCCAGATACATGCATGCTATTTATTCAGCTGCCGGGAGCCATTCCCTGTCTCCATACACCCAAGGATTGTCTATCCTCTCCTAAATTTTATTTCTAATATTCTTGCTACATAGTCAGGTTAAAAAAATGAAACACAAAAAAATCAGGAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG029872]] |
Revision as of 06:15, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT075569 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1412 nt |
| Genomic location |
chr2-:175410028..175411063 |
| Exon number |
1 |
| Exons |
175410028..175411063 |
| Genome context |
|
| Sequence |
000001 GTTGATTATA GCAACTACAT GAGGACATAT ATTTAACAGT GAAATGAAGA TACTTTATTT CAGGGGAAAA ATGACTTTTA 000080
000081 AGAGGCTCTA ATTTTTTTTC TTGGCTTTGC ACAGACAAAA TCACCACATT TTGCTCAACC CTAATTTTGT CATTTATAAA 000160 000161 ATGAAACGTT TAGCCTAAAT AATCTCTCAG GTCTCTTTCC AACTCGTACC ATGAATCTGA GAGACCTGGA AAGGAAGTGG 000240 000241 GACAACATTT CTGTTGTGAA GAAGGCAAGG CTGGTGATGT GGGCGTGAAG GTTAAAGATG CTGGCCCCTC ATGACATTGG 000320 000321 CGAACGTGGC CCTTCTTCCA CCTGCTCAGC CAGAAACGCT ACTGAGTGCA GACGTTTGTA TACTAAGAGG TATTTGGGTG 000400 000401 CATACGATTT AATCCTTAGC CTGATGAACT TATAAGTGTG AAGAGAAGCA AGACTGTTCA CAAATTGCTA AAACAAAATA 000480 000481 TGATGCTACA TTTACCCAAC AAACCTAAGA TTCTGTGTAC AAAACATTGC AGTAGTATCA CTGGAATTGT GTGTGGGCTG 000560 000561 CTGTGAGTTC AGCGTCCTCT CAGAGCACCG TGGTTCCAAG TGGACGGACC TTAAAGGGTT CCATAATCAG GACAGGTTGA 000640 000641 AAGAATAGTG AATGCCACAC AAATGCCCCC ACACCCTTGA CCCTGTGCCA CCAAAGGCAA AACCAAAAGA CATTTCAATT 000720 000721 GGGAAAATCG TGATGCTTGT CTCTTATTTT CTTTCTTTTA TTATTATTAA GACACGATTA TCATTCAGGA TTCATGCTGT 000800 000801 TTACAGTTTG ACTACTTCAT AGAAAAATGT GTCTATAAAA CACCTGGTAG TTGTAAAAAG GCTTGGGTAG GGCCCAGAAA 000880 000881 GCCAGATACA TGCATGCTAT TTATTCAGCT GCCGGGAGCC ATTCCCTGTC TCCATACACC CAAGGATTGT CGGCGGTGGC 000960 000961 GGGAAGCGCA GGCCCGGCGG GGAGGGGCCG CAGTGTGAAA AAACAACTGA TGTGAAGAAA AGTAAATTCT GTGAAGCTGA 001040 001041 TGTCTCCAGT GACCTTCGAA AAGAAGTAGA AAATCATTAT AAGCTTTCTT TTATTATTAT TAAGACACGA TTATCATTCA 001120 001121 GGATTCATGC TGTTTACAGT TTGACTACTT CATAGAAAAA TGTGTCTATA AAACACCTGG TAGTTGTAAA AAGGCTTGGG 001200 001201 TAGGGCCCAG AAAGCCAGAT ACATGCATGC TATTTATTCA GCTGCCGGGA GCCATTCCCT GTCTCCATAC ACCCAAGGAT 001280 001281 TGTCTATCCT CTCCTAAATT TTATTTCTAA TATTCTTGCT ACATAGTCAG GTTAAAAAAA TGAAACACAA AAAAATCAGG 001360 001361 AAAATCAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AA |
Predicted Small Protein
| Name | NONHSAT075569_smProtein_893:997 |
| Length | 35 |
| Molecular weight | 3819.4926 |
| Aromaticity | 0.0588235294118 |
| Instability index | 62.4323529412 |
| Isoelectric point | 10.6643676758 |
| Runs | 5 |
| Runs residual | 0.0390915860015 |
| Runs probability | 0.044038155803 |
| Amino acid sequence | MLFIQLPGAIPCLHTPKDCRRWREAQARRGGAAV |
| Secondary structure | LEEEELLLLLLLLLLHHHHHHHHHHHHHHLLLLL |
| PRMN | - |
| PiMo | - |
