Difference between revisions of "NONHSAT119595"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTTACACGAACGCCCTTCCAGGACTCTGTCTGCTTTTGGGGTGGAAGTGCCCTGCCAAAAACTCCAGCTCTCCATGCTGGCTGTGTGGCCAGCATACCTCCTGCCTTTTCAACGATTCCTCTGCCCTGGATAGAGAGCGGTGTCTCATAACAGTTTGGAAACTACAAAAGTTTCCCTGGCAGGATGAATGATTGACTCGGCAACATGTTCTTGCCTTTTGGAGTTGCCCTCCAATTTTTCCAGGCTTGATTCTGTAAATCATTTCATCTTGTAAAAATACTGGGCTGTGAGCACGGATGATCTCAAAGATGAGGAAACAGAAGCTGGGATATGTGAGTAAACATTTCCAAGGTCCTGCAGCTAATCAATGGTTGACAACTTCTTTCCTCTGCCTATGTTGCCATCCATGTCATGGTTTGTGTCAAGACTCTAGGAGAAGTCTACCATCAGCACCACAGCTACTGTGCACAAATCCAGAATGCCAGACTGAAGTCAGAAGGAAAGATCCTTTATATATTGAAAGAAGAAAGTAGAACCATTTCTGGGTCCCAGCTGTGGGAAGAGCTCCTGTGGCTGTGAATTCTGACTTCTGGGTCTTGGCACAAGGTGTGGCCAGCAAGCTAAGCTGTCCTGAGGGTGTGCAGGGCCAGGGGCTGAAGACAGTGTTGGAGCATCCACAGACTGGTTTGTCTCAAGAAGCATGTTACTAAATATGAAATAGCAAAATCTGCAAGTGGGTTTACTTTTCCCCCATAGATTAGAATGGATTCAATATTATCTCTTTATTAGTGTCACTTTTAATCACTTGTATAGCAAGTAGGACAGAAAGGTGGCTTGAAAGTCAATCATGTGAGAATTCCAGATAAATTGACTTTGCTCACAACAATCTGTTATTCATGTGACTATCAACTGTCATGTGTGCTGGGGCAAAAAAAGAAGATAAGGATTCACTGGTATCAGATAGTTCCAGGAGGGGAAACCCAGGATTGAACTTTTTCAGCCTTCTATGGTAAAATTTCCTGCTCTGTCGGTGCGCCAAAGCTTTTTTCAGTTTCCTAAACTCCCATATTCAAGAAGATAAGCTATTTTCTCTTCTTTCTCATCCTTCCTTGACAAAGCAAAGCATATTTTCATTGTCTACTCTGTGTCATCCATGCTTGGTTCCTGTCCTCAAAGAGCTTATAGTTCAAATAAAGGAGAGGGAGCATTTTACAAGGGAATTAAAGGTAAAAGATTCTGAAAGCCAGTTTAAAAAGTCGTGAGGGAGGGGTCTGGGAGAAGCTGAGCAGGGGTGAAAGGGTACGAAACATTATGGAAGGAGAACAGGGGAGCACCCTGACTACTGGGTGGAAACACCAATCAGTGGGTAGAAACCACACAGTGGTAACACTGATCAGTGGGTAGAAAACAATGACAGCAGGTATATGAGGCATGGAACACTTGGCTTATTGTAAAGTTTTCAAAATATGCAGTCCTTTCTATCCACCAGGGGTTGGGAGTTGTCTTTGTATATCAACCGTGGAAGGGCTGTTTTGGTTCATCATTCTGTGGTCTACCTGGGTAGACCTGATGCAGCCGTGTTTCTGAGGAAAGGAAGAACAGCTTTTGTTTTGTGATATGTAATGGTAGATGTAGTGCCATGGAATGATGCAGATTTCATTCAGATATTCTTGGATCTTGGCCCCAGGACTCACTCATTCTTCCCTATATGAGCATTGGTAGTTACAGGTTTTATCCTTCCTTTAATTGTAAGTCTTTTGAAGCCAAAAACTGTATCCAATTTGTCACTGTCTCCTAACAGTACTTAGCAGTGTCTGATGCATCACAGGGAGTTTGTAAATGTTTGGATAAATAAAGGGAAAACAAAAAC</dnaseq>| | sequence = <dnaseq>TTTACACGAACGCCCTTCCAGGACTCTGTCTGCTTTTGGGGTGGAAGTGCCCTGCCAAAAACTCCAGCTCTCCATGCTGGCTGTGTGGCCAGCATACCTCCTGCCTTTTCAACGATTCCTCTGCCCTGGATAGAGAGCGGTGTCTCATAACAGTTTGGAAACTACAAAAGTTTCCCTGGCAGGATGAATGATTGACTCGGCAACATGTTCTTGCCTTTTGGAGTTGCCCTCCAATTTTTCCAGGCTTGATTCTGTAAATCATTTCATCTTGTAAAAATACTGGGCTGTGAGCACGGATGATCTCAAAGATGAGGAAACAGAAGCTGGGATATGTGAGTAAACATTTCCAAGGTCCTGCAGCTAATCAATGGTTGACAACTTCTTTCCTCTGCCTATGTTGCCATCCATGTCATGGTTTGTGTCAAGACTCTAGGAGAAGTCTACCATCAGCACCACAGCTACTGTGCACAAATCCAGAATGCCAGACTGAAGTCAGAAGGAAAGATCCTTTATATATTGAAAGAAGAAAGTAGAACCATTTCTGGGTCCCAGCTGTGGGAAGAGCTCCTGTGGCTGTGAATTCTGACTTCTGGGTCTTGGCACAAGGTGTGGCCAGCAAGCTAAGCTGTCCTGAGGGTGTGCAGGGCCAGGGGCTGAAGACAGTGTTGGAGCATCCACAGACTGGTTTGTCTCAAGAAGCATGTTACTAAATATGAAATAGCAAAATCTGCAAGTGGGTTTACTTTTCCCCCATAGATTAGAATGGATTCAATATTATCTCTTTATTAGTGTCACTTTTAATCACTTGTATAGCAAGTAGGACAGAAAGGTGGCTTGAAAGTCAATCATGTGAGAATTCCAGATAAATTGACTTTGCTCACAACAATCTGTTATTCATGTGACTATCAACTGTCATGTGTGCTGGGGCAAAAAAAGAAGATAAGGATTCACTGGTATCAGATAGTTCCAGGAGGGGAAACCCAGGATTGAACTTTTTCAGCCTTCTATGGTAAAATTTCCTGCTCTGTCGGTGCGCCAAAGCTTTTTTCAGTTTCCTAAACTCCCATATTCAAGAAGATAAGCTATTTTCTCTTCTTTCTCATCCTTCCTTGACAAAGCAAAGCATATTTTCATTGTCTACTCTGTGTCATCCATGCTTGGTTCCTGTCCTCAAAGAGCTTATAGTTCAAATAAAGGAGAGGGAGCATTTTACAAGGGAATTAAAGGTAAAAGATTCTGAAAGCCAGTTTAAAAAGTCGTGAGGGAGGGGTCTGGGAGAAGCTGAGCAGGGGTGAAAGGGTACGAAACATTATGGAAGGAGAACAGGGGAGCACCCTGACTACTGGGTGGAAACACCAATCAGTGGGTAGAAACCACACAGTGGTAACACTGATCAGTGGGTAGAAAACAATGACAGCAGGTATATGAGGCATGGAACACTTGGCTTATTGTAAAGTTTTCAAAATATGCAGTCCTTTCTATCCACCAGGGGTTGGGAGTTGTCTTTGTATATCAACCGTGGAAGGGCTGTTTTGGTTCATCATTCTGTGGTCTACCTGGGTAGACCTGATGCAGCCGTGTTTCTGAGGAAAGGAAGAACAGCTTTTGTTTTGTGATATGTAATGGTAGATGTAGTGCCATGGAATGATGCAGATTTCATTCAGATATTCTTGGATCTTGGCCCCAGGACTCACTCATTCTTCCCTATATGAGCATTGGTAGTTACAGGTTTTATCCTTCCTTTAATTGTAAGTCTTTTGAAGCCAAAAACTGTATCCAATTTGTCACTGTCTCCTAACAGTACTTAGCAGTGTCTGATGCATCACAGGGAGTTTGTAAATGTTTGGATAAATAAAGGGAAAACAAAAAC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG047149]] |
Revision as of 06:20, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119595 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1870 nt |
Genomic location |
chr7-:25632971..25702673 |
Exon number |
4 |
Exons |
25632971..25634336,25697580..25697713,25701290..25701351,25702366..25702673 |
Genome context |
|
Sequence |
000001 TTTACACGAA CGCCCTTCCA GGACTCTGTC TGCTTTTGGG GTGGAAGTGC CCTGCCAAAA ACTCCAGCTC TCCATGCTGG 000080
000081 CTGTGTGGCC AGCATACCTC CTGCCTTTTC AACGATTCCT CTGCCCTGGA TAGAGAGCGG TGTCTCATAA CAGTTTGGAA 000160 000161 ACTACAAAAG TTTCCCTGGC AGGATGAATG ATTGACTCGG CAACATGTTC TTGCCTTTTG GAGTTGCCCT CCAATTTTTC 000240 000241 CAGGCTTGAT TCTGTAAATC ATTTCATCTT GTAAAAATAC TGGGCTGTGA GCACGGATGA TCTCAAAGAT GAGGAAACAG 000320 000321 AAGCTGGGAT ATGTGAGTAA ACATTTCCAA GGTCCTGCAG CTAATCAATG GTTGACAACT TCTTTCCTCT GCCTATGTTG 000400 000401 CCATCCATGT CATGGTTTGT GTCAAGACTC TAGGAGAAGT CTACCATCAG CACCACAGCT ACTGTGCACA AATCCAGAAT 000480 000481 GCCAGACTGA AGTCAGAAGG AAAGATCCTT TATATATTGA AAGAAGAAAG TAGAACCATT TCTGGGTCCC AGCTGTGGGA 000560 000561 AGAGCTCCTG TGGCTGTGAA TTCTGACTTC TGGGTCTTGG CACAAGGTGT GGCCAGCAAG CTAAGCTGTC CTGAGGGTGT 000640 000641 GCAGGGCCAG GGGCTGAAGA CAGTGTTGGA GCATCCACAG ACTGGTTTGT CTCAAGAAGC ATGTTACTAA ATATGAAATA 000720 000721 GCAAAATCTG CAAGTGGGTT TACTTTTCCC CCATAGATTA GAATGGATTC AATATTATCT CTTTATTAGT GTCACTTTTA 000800 000801 ATCACTTGTA TAGCAAGTAG GACAGAAAGG TGGCTTGAAA GTCAATCATG TGAGAATTCC AGATAAATTG ACTTTGCTCA 000880 000881 CAACAATCTG TTATTCATGT GACTATCAAC TGTCATGTGT GCTGGGGCAA AAAAAGAAGA TAAGGATTCA CTGGTATCAG 000960 000961 ATAGTTCCAG GAGGGGAAAC CCAGGATTGA ACTTTTTCAG CCTTCTATGG TAAAATTTCC TGCTCTGTCG GTGCGCCAAA 001040 001041 GCTTTTTTCA GTTTCCTAAA CTCCCATATT CAAGAAGATA AGCTATTTTC TCTTCTTTCT CATCCTTCCT TGACAAAGCA 001120 001121 AAGCATATTT TCATTGTCTA CTCTGTGTCA TCCATGCTTG GTTCCTGTCC TCAAAGAGCT TATAGTTCAA ATAAAGGAGA 001200 001201 GGGAGCATTT TACAAGGGAA TTAAAGGTAA AAGATTCTGA AAGCCAGTTT AAAAAGTCGT GAGGGAGGGG TCTGGGAGAA 001280 001281 GCTGAGCAGG GGTGAAAGGG TACGAAACAT TATGGAAGGA GAACAGGGGA GCACCCTGAC TACTGGGTGG AAACACCAAT 001360 001361 CAGTGGGTAG AAACCACACA GTGGTAACAC TGATCAGTGG GTAGAAAACA ATGACAGCAG GTATATGAGG CATGGAACAC 001440 001441 TTGGCTTATT GTAAAGTTTT CAAAATATGC AGTCCTTTCT ATCCACCAGG GGTTGGGAGT TGTCTTTGTA TATCAACCGT 001520 001521 GGAAGGGCTG TTTTGGTTCA TCATTCTGTG GTCTACCTGG GTAGACCTGA TGCAGCCGTG TTTCTGAGGA AAGGAAGAAC 001600 001601 AGCTTTTGTT TTGTGATATG TAATGGTAGA TGTAGTGCCA TGGAATGATG CAGATTTCAT TCAGATATTC TTGGATCTTG 001680 001681 GCCCCAGGAC TCACTCATTC TTCCCTATAT GAGCATTGGT AGTTACAGGT TTTATCCTTC CTTTAATTGT AAGTCTTTTG 001760 001761 AAGCCAAAAA CTGTATCCAA TTTGTCACTG TCTCCTAACA GTACTTAGCA GTGTCTGATG CATCACAGGG AGTTTGTAAA 001840 001841 TGTTTGGATA AATAAAGGGA AAACAAAAAC |
Predicted Small Protein
Name | NONHSAT119595_smProtein_296:532 |
Length | 79 |
Molecular weight | 9034.5141 |
Aromaticity | 0.0641025641026 |
Instability index | 84.7192307692 |
Isoelectric point | 9.45928955078 |
Runs | 10 |
Runs residual | 0.00547217010632 |
Runs probability | 0.031708178767 |
Amino acid sequence | MISKMRKQKLGYVSKHFQGPAANQWLTTSFLCLCCHPCHGLCQDSRRSLPSAPQLLCTNP ECQTEVRRKDPLYIERRK |
Secondary structure | LLHHHHHHHLLLLLLLLLLLLLLHHHHHHHHEELLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLEEEELLLLEEEELL |
PRMN | - |
PiMo | - |