Difference between revisions of "NONHSAT140940"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TAGGTACTTACTGTTTGTTAATAGCAGTTTGAGTGATGACTGCAAATGCCAGAGATTGCTTCTGAACAAAGCTTGGATACAATTACAAAGTGAGGTTTTGAGAATAATTCCAGCTGAAATCATTTATATTGAGAGGATGAGAACATGGCAGCAGGAGGAAACTATTTCTGAGAATGGAATAAATGGGAGTGGAGGGGGTATAAGAGGTCCATCATCCATAGCCTCAATGATGAACAAGACATCCGAAAAATAGGAGGATTATTCAAGCCTCGCCCCTCACTTCCTCCTCCCTTGTGATCGGCAATCTCGCACTTACAGACGGTGAACCCAATGCTGAAGCTGCTCTGAGAGTGCTGGGCCATCTTAGGAGAGCCTGTCGTCCCACTGGTGAAATAAATGGCCACTGGTTCTTGACTTCCTGTTTCCACACAGCTGTGCTCTTCAGAGGCGGATCTGCAAAATATGGATGGACCCCAAGATGGTGGTatgaagaaatagaagaagagCATTGCAATAACTATCAATATTTGTGTGGCCTAATATTAATAACTGGTAGGACAATAATTCCAGTTCTggccagacattgtggctaatgcctataatcccagcactttggtaggccaaggcaggtggatcacttcagatcagaagttcaagaccaggctggccaacatggtgaaacctcatctctactaagaatacaaaaattagccaggtatgatggcatgtttctgtagtcccagctactcagaaggctgaggcagaagaatttttcagacccaggaggcaggggtgacagtgagctgagatcatgccactgaactccagcctgggtgacagaatgagactgtctcaaaaaaaaaaaTCTgcgaaggacatcttcaaggagagctacaaaccactgctcaagaaaataagagaggacacaaacaaatgggaaaacatttcatgctcatggataggaagaatcaatgtagtgaaaatggtcatactgcccaaagtaatttgtagattcaatgctattcccatcaagctaccagtgactttctttgcagaattagaaaaaactactttaaatttcatatggaacaaaaaagagcccatatagccaagacaatcctaagcaaaaagaacaaagctggaggcatcatgctacctgacttcaaactatactacaaggctactgtaaccaaaacagcatggtactggtgccaaaacagatatatggaccaatggaacagaacagagacctcagaaataacactatacatctacagccatctgatctttgacaaacctgacaaaagcaagcagtgggaaaagcattccctatttaataaatggtgctgggaaaactggctagccatatgcagaaaactaaaactggactccttcattacacctgatacaaacattaactcaagatggattaaagacctaaatgtaaaacccaaaaccataaaagccctggaagaaaacctgggcaatgccattcaggacacaggcgtgggcaaagacttcatgagtaaaacaccaaaagcaattgcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagctctgcacagcaaaagagactagcatcacagtgaacaggcaacctacagaatgggagaaaatgtttgcaatctacccatccgacaaatggctaatatccagaatctacaaggaactgaaacaaattgataagaacaaaaacaaacaaccccatcataaaataggcaaaggatatgaacagatagttctcaataggagatatttattcagccaacaaacatttgaaaaaaagctcatcatccctggtcattagagaaatgcaaatcaaaatcacaatgagataccatctcacgtcagtcagaatggtgattattaaaaagtcaggaaacatttgggaggccaagatgggcagatcacgaggtcaggagtttgagaccagcctggctaacatggtgaaaccccatctctactaaagatacaaaaaattagccgggcatggtggcacatgcctgtaatcccagctattcagaaggctgaggccggagaatggcttgaacctgggaggtggaggttgcagtgagtcacgattgcaccattgcactccagcctgggcaacagggcaagactctgtcttataaaaaaagaaaagtcaggaaacaacagatgctggcaaagctgtggagaaatgggagcacttctacactgttggtgggagtgtaaattagttcagttattgtggaagacagtgtggggatttctcaaggacctagaaccagaaatactatttgacccagcaatcccattactgggtatatacctaaaggattagaaatcattctactataaagatacatgcacatgtatgtttattgcagcactatttacagtagcaaagacttggaaccaaccagaatgcccatccatgctagactggatgaagaaaaagtggcacatatacaccatgg</dnaseq>| | sequence = <dnaseq>TAGGTACTTACTGTTTGTTAATAGCAGTTTGAGTGATGACTGCAAATGCCAGAGATTGCTTCTGAACAAAGCTTGGATACAATTACAAAGTGAGGTTTTGAGAATAATTCCAGCTGAAATCATTTATATTGAGAGGATGAGAACATGGCAGCAGGAGGAAACTATTTCTGAGAATGGAATAAATGGGAGTGGAGGGGGTATAAGAGGTCCATCATCCATAGCCTCAATGATGAACAAGACATCCGAAAAATAGGAGGATTATTCAAGCCTCGCCCCTCACTTCCTCCTCCCTTGTGATCGGCAATCTCGCACTTACAGACGGTGAACCCAATGCTGAAGCTGCTCTGAGAGTGCTGGGCCATCTTAGGAGAGCCTGTCGTCCCACTGGTGAAATAAATGGCCACTGGTTCTTGACTTCCTGTTTCCACACAGCTGTGCTCTTCAGAGGCGGATCTGCAAAATATGGATGGACCCCAAGATGGTGGTatgaagaaatagaagaagagCATTGCAATAACTATCAATATTTGTGTGGCCTAATATTAATAACTGGTAGGACAATAATTCCAGTTCTggccagacattgtggctaatgcctataatcccagcactttggtaggccaaggcaggtggatcacttcagatcagaagttcaagaccaggctggccaacatggtgaaacctcatctctactaagaatacaaaaattagccaggtatgatggcatgtttctgtagtcccagctactcagaaggctgaggcagaagaatttttcagacccaggaggcaggggtgacagtgagctgagatcatgccactgaactccagcctgggtgacagaatgagactgtctcaaaaaaaaaaaTCTgcgaaggacatcttcaaggagagctacaaaccactgctcaagaaaataagagaggacacaaacaaatgggaaaacatttcatgctcatggataggaagaatcaatgtagtgaaaatggtcatactgcccaaagtaatttgtagattcaatgctattcccatcaagctaccagtgactttctttgcagaattagaaaaaactactttaaatttcatatggaacaaaaaagagcccatatagccaagacaatcctaagcaaaaagaacaaagctggaggcatcatgctacctgacttcaaactatactacaaggctactgtaaccaaaacagcatggtactggtgccaaaacagatatatggaccaatggaacagaacagagacctcagaaataacactatacatctacagccatctgatctttgacaaacctgacaaaagcaagcagtgggaaaagcattccctatttaataaatggtgctgggaaaactggctagccatatgcagaaaactaaaactggactccttcattacacctgatacaaacattaactcaagatggattaaagacctaaatgtaaaacccaaaaccataaaagccctggaagaaaacctgggcaatgccattcaggacacaggcgtgggcaaagacttcatgagtaaaacaccaaaagcaattgcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagctctgcacagcaaaagagactagcatcacagtgaacaggcaacctacagaatgggagaaaatgtttgcaatctacccatccgacaaatggctaatatccagaatctacaaggaactgaaacaaattgataagaacaaaaacaaacaaccccatcataaaataggcaaaggatatgaacagatagttctcaataggagatatttattcagccaacaaacatttgaaaaaaagctcatcatccctggtcattagagaaatgcaaatcaaaatcacaatgagataccatctcacgtcagtcagaatggtgattattaaaaagtcaggaaacatttgggaggccaagatgggcagatcacgaggtcaggagtttgagaccagcctggctaacatggtgaaaccccatctctactaaagatacaaaaaattagccgggcatggtggcacatgcctgtaatcccagctattcagaaggctgaggccggagaatggcttgaacctgggaggtggaggttgcagtgagtcacgattgcaccattgcactccagcctgggcaacagggcaagactctgtcttataaaaaaagaaaagtcaggaaacaacagatgctggcaaagctgtggagaaatgggagcacttctacactgttggtgggagtgtaaattagttcagttattgtggaagacagtgtggggatttctcaaggacctagaaccagaaatactatttgacccagcaatcccattactgggtatatacctaaaggattagaaatcattctactataaagatacatgcacatgtatgtttattgcagcactatttacagtagcaaagacttggaaccaaccagaatgcccatccatgctagactggatgaagaaaaagtggcacatatacaccatgg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG018820]] |
Revision as of 06:27, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT140940 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
2496 nt |
| Genomic location |
chr16-:20713222..20742874 |
| Exon number |
5 |
| Exons |
20713222..20715231,20729639..20729806,20732464..20732575,20741911..20742003,20742762..20742874 |
| Genome context |
|
| Sequence |
000001 TAGGTACTTA CTGTTTGTTA ATAGCAGTTT GAGTGATGAC TGCAAATGCC AGAGATTGCT TCTGAACAAA GCTTGGATAC 000080
000081 AATTACAAAG TGAGGTTTTG AGAATAATTC CAGCTGAAAT CATTTATATT GAGAGGATGA GAACATGGCA GCAGGAGGAA 000160 000161 ACTATTTCTG AGAATGGAAT AAATGGGAGT GGAGGGGGTA TAAGAGGTCC ATCATCCATA GCCTCAATGA TGAACAAGAC 000240 000241 ATCCGAAAAA TAGGAGGATT ATTCAAGCCT CGCCCCTCAC TTCCTCCTCC CTTGTGATCG GCAATCTCGC ACTTACAGAC 000320 000321 GGTGAACCCA ATGCTGAAGC TGCTCTGAGA GTGCTGGGCC ATCTTAGGAG AGCCTGTCGT CCCACTGGTG AAATAAATGG 000400 000401 CCACTGGTTC TTGACTTCCT GTTTCCACAC AGCTGTGCTC TTCAGAGGCG GATCTGCAAA ATATGGATGG ACCCCAAGAT 000480 000481 GGTGGTatga agaaatagaa gaagagCATT GCAATAACTA TCAATATTTG TGTGGCCTAA TATTAATAAC TGGTAGGACA 000560 000561 ATAATTCCAG TTCTggccag acattgtggc taatgcctat aatcccagca ctttggtagg ccaaggcagg tggatcactt 000640 000641 cagatcagaa gttcaagacc aggctggcca acatggtgaa acctcatctc tactaagaat acaaaaatta gccaggtatg 000720 000721 atggcatgtt tctgtagtcc cagctactca gaaggctgag gcagaagaat ttttcagacc caggaggcag gggtgacagt 000800 000801 gagctgagat catgccactg aactccagcc tgggtgacag aatgagactg tctcaaaaaa aaaaaTCTgc gaaggacatc 000880 000881 ttcaaggaga gctacaaacc actgctcaag aaaataagag aggacacaaa caaatgggaa aacatttcat gctcatggat 000960 000961 aggaagaatc aatgtagtga aaatggtcat actgcccaaa gtaatttgta gattcaatgc tattcccatc aagctaccag 001040 001041 tgactttctt tgcagaatta gaaaaaacta ctttaaattt catatggaac aaaaaagagc ccatatagcc aagacaatcc 001120 001121 taagcaaaaa gaacaaagct ggaggcatca tgctacctga cttcaaacta tactacaagg ctactgtaac caaaacagca 001200 001201 tggtactggt gccaaaacag atatatggac caatggaaca gaacagagac ctcagaaata acactataca tctacagcca 001280 001281 tctgatcttt gacaaacctg acaaaagcaa gcagtgggaa aagcattccc tatttaataa atggtgctgg gaaaactggc 001360 001361 tagccatatg cagaaaacta aaactggact ccttcattac acctgataca aacattaact caagatggat taaagaccta 001440 001441 aatgtaaaac ccaaaaccat aaaagccctg gaagaaaacc tgggcaatgc cattcaggac acaggcgtgg gcaaagactt 001520 001521 catgagtaaa acaccaaaag caattgcaac aaaagccaaa attgacaaat gggatctaat taaactaaag agctctgcac 001600 001601 agcaaaagag actagcatca cagtgaacag gcaacctaca gaatgggaga aaatgtttgc aatctaccca tccgacaaat 001680 001681 ggctaatatc cagaatctac aaggaactga aacaaattga taagaacaaa aacaaacaac cccatcataa aataggcaaa 001760 001761 ggatatgaac agatagttct caataggaga tatttattca gccaacaaac atttgaaaaa aagctcatca tccctggtca 001840 001841 ttagagaaat gcaaatcaaa atcacaatga gataccatct cacgtcagtc agaatggtga ttattaaaaa gtcaggaaac 001920 001921 atttgggagg ccaagatggg cagatcacga ggtcaggagt ttgagaccag cctggctaac atggtgaaac cccatctcta 002000 002001 ctaaagatac aaaaaattag ccgggcatgg tggcacatgc ctgtaatccc agctattcag aaggctgagg ccggagaatg 002080 002081 gcttgaacct gggaggtgga ggttgcagtg agtcacgatt gcaccattgc actccagcct gggcaacagg gcaagactct 002160 002161 gtcttataaa aaaagaaaag tcaggaaaca acagatgctg gcaaagctgt ggagaaatgg gagcacttct acactgttgg 002240 002241 tgggagtgta aattagttca gttattgtgg aagacagtgt ggggatttct caaggaccta gaaccagaaa tactatttga 002320 002321 cccagcaatc ccattactgg gtatatacct aaaggattag aaatcattct actataaaga tacatgcaca tgtatgttta 002400 002401 ttgcagcact atttacagta gcaaagactt ggaaccaacc agaatgccca tccatgctag actggatgaa gaaaaagtgg 002480 002481 cacatataca ccatgg |
Predicted Small Protein
| Name | NONHSAT140940_smProtein_1652:1843 |
| Length | 64 |
| Molecular weight | 7657.897 |
| Aromaticity | 0.126984126984 |
| Instability index | 46.953968254 |
| Isoelectric point | 9.99652099609 |
| Runs | 11 |
| Runs residual | 0.0296404275996 |
| Runs probability | 0.0334826805415 |
| Amino acid sequence | MFAIYPSDKWLISRIYKELKQIDKNKNKQPHHKIGKGYEQIVLNRRYLFSQQTFEKKLII PGH |
| Secondary structure | LEEEELLLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLEEEEEEELLEEEEHHHHHHEEEL LLL |
| PRMN | - |
| PiMo | - |
