Difference between revisions of "NONHSAT098621"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AATAATCTTATCTGTAAATTTACAACAGAATGAAATGATAGGAGAGAATGTATGCTATAGCTTTTGTGTTTCATTTGCAAGCTATCACAAGGAGGAACTGGCTGGTAGTAGTAAAAGATTTTACCTAGTAAGCTTATGATTCTATACGCATTGCCCACCTTCTCTGGTAACTTGGAATATCAACCTTAGCAAAGTCCTTCACAAGCCTTCCAAGTCTTCAATACTATACATTCCTGCATAGCAGAAAATAACATTGCATGAGTTAGTTTACCTTTTCCTTGCTAGAGCAAAAGGATCAAAAGAATTACAGAGGGGAGACTTCATCTCCCAAAATGGGAAGCAAATACTTCTTACTGCAGGAGAGTGTTTGAAGATCAAGGCTTGAAAGAAAAGAAGACCACTTTTCTTAGTTTTTAAAGTAATTTTTAAAATTTCACTCTGGCTTAATGGTCATCAAGATCAATTCAAAAAATTACAAaagaaaaaaaaaaaggaaagaaggaaggaagtacaaggaaggGTAAAGGGGCCAGGACCCTGGTGCCATCTATTAGCCAAGTGAGCTAACCTAGAGAAGGACCTTGCAAGGGGCTTGGCTGCAAATGCTCAGATATCTGTCTTTTCTAGCTCACCATCCAGCCTCCGCATGAGGGAGCATCTCTTGTTGGCCATGCTACTTAACTGTACCAGCACTTCGTAGCTTGACTGCTCTGTAGTACCAAAGTTGGTATATGCCATGAGATCCTTACTCAATCCTAGTAGAGAAAAAAGAGCCCCCATCTGCACTTTAGACAGATGAACTGAATAAGTTTCAAACCCCAGAGCTAGGACTGCAGTCCTGAGACCCTATAACCTGTATGACTAGAGAAGTGAAACTATGATTTAGTTTCTTATTAGAGCTTCGACTTCCGTATATTCCTATGCCTAAGCTGGATGAACTAATAAACCTCACAGTAGACTGAGGCTCTTACACAAGTAGCTATAGCTAGTCATAGTCCATTATCTCTGCAAATAAAACCTCCACGTACTTCCAACCATTTACCTCTCCTTCCACCACTACCTCTTGATTCCACCCTGACAGAAGCAAACTTGCAAAGTCCCATTGCAAGGTATTTACTTTAGCTCCCCAAATAGGATTGTAA</dnaseq>| | sequence = <dnaseq>AATAATCTTATCTGTAAATTTACAACAGAATGAAATGATAGGAGAGAATGTATGCTATAGCTTTTGTGTTTCATTTGCAAGCTATCACAAGGAGGAACTGGCTGGTAGTAGTAAAAGATTTTACCTAGTAAGCTTATGATTCTATACGCATTGCCCACCTTCTCTGGTAACTTGGAATATCAACCTTAGCAAAGTCCTTCACAAGCCTTCCAAGTCTTCAATACTATACATTCCTGCATAGCAGAAAATAACATTGCATGAGTTAGTTTACCTTTTCCTTGCTAGAGCAAAAGGATCAAAAGAATTACAGAGGGGAGACTTCATCTCCCAAAATGGGAAGCAAATACTTCTTACTGCAGGAGAGTGTTTGAAGATCAAGGCTTGAAAGAAAAGAAGACCACTTTTCTTAGTTTTTAAAGTAATTTTTAAAATTTCACTCTGGCTTAATGGTCATCAAGATCAATTCAAAAAATTACAAaagaaaaaaaaaaaggaaagaaggaaggaagtacaaggaaggGTAAAGGGGCCAGGACCCTGGTGCCATCTATTAGCCAAGTGAGCTAACCTAGAGAAGGACCTTGCAAGGGGCTTGGCTGCAAATGCTCAGATATCTGTCTTTTCTAGCTCACCATCCAGCCTCCGCATGAGGGAGCATCTCTTGTTGGCCATGCTACTTAACTGTACCAGCACTTCGTAGCTTGACTGCTCTGTAGTACCAAAGTTGGTATATGCCATGAGATCCTTACTCAATCCTAGTAGAGAAAAAAGAGCCCCCATCTGCACTTTAGACAGATGAACTGAATAAGTTTCAAACCCCAGAGCTAGGACTGCAGTCCTGAGACCCTATAACCTGTATGACTAGAGAAGTGAAACTATGATTTAGTTTCTTATTAGAGCTTCGACTTCCGTATATTCCTATGCCTAAGCTGGATGAACTAATAAACCTCACAGTAGACTGAGGCTCTTACACAAGTAGCTATAGCTAGTCATAGTCCATTATCTCTGCAAATAAAACCTCCACGTACTTCCAACCATTTACCTCTCCTTCCACCACTACCTCTTGATTCCACCCTGACAGAAGCAAACTTGCAAAGTCCCATTGCAAGGTATTTACTTTAGCTCCCCAAATAGGATTGTAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG039025]] |
Revision as of 06:39, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT098621 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1142 nt |
| Genomic location |
chr4+:146107175..146108316 |
| Exon number |
1 |
| Exons |
146107175..146108316 |
| Genome context |
|
| Sequence |
000001 AATAATCTTA TCTGTAAATT TACAACAGAA TGAAATGATA GGAGAGAATG TATGCTATAG CTTTTGTGTT TCATTTGCAA 000080
000081 GCTATCACAA GGAGGAACTG GCTGGTAGTA GTAAAAGATT TTACCTAGTA AGCTTATGAT TCTATACGCA TTGCCCACCT 000160 000161 TCTCTGGTAA CTTGGAATAT CAACCTTAGC AAAGTCCTTC ACAAGCCTTC CAAGTCTTCA ATACTATACA TTCCTGCATA 000240 000241 GCAGAAAATA ACATTGCATG AGTTAGTTTA CCTTTTCCTT GCTAGAGCAA AAGGATCAAA AGAATTACAG AGGGGAGACT 000320 000321 TCATCTCCCA AAATGGGAAG CAAATACTTC TTACTGCAGG AGAGTGTTTG AAGATCAAGG CTTGAAAGAA AAGAAGACCA 000400 000401 CTTTTCTTAG TTTTTAAAGT AATTTTTAAA ATTTCACTCT GGCTTAATGG TCATCAAGAT CAATTCAAAA AATTACAAaa 000480 000481 gaaaaaaaaa aaggaaagaa ggaaggaagt acaaggaagg GTAAAGGGGC CAGGACCCTG GTGCCATCTA TTAGCCAAGT 000560 000561 GAGCTAACCT AGAGAAGGAC CTTGCAAGGG GCTTGGCTGC AAATGCTCAG ATATCTGTCT TTTCTAGCTC ACCATCCAGC 000640 000641 CTCCGCATGA GGGAGCATCT CTTGTTGGCC ATGCTACTTA ACTGTACCAG CACTTCGTAG CTTGACTGCT CTGTAGTACC 000720 000721 AAAGTTGGTA TATGCCATGA GATCCTTACT CAATCCTAGT AGAGAAAAAA GAGCCCCCAT CTGCACTTTA GACAGATGAA 000800 000801 CTGAATAAGT TTCAAACCCC AGAGCTAGGA CTGCAGTCCT GAGACCCTAT AACCTGTATG ACTAGAGAAG TGAAACTATG 000880 000881 ATTTAGTTTC TTATTAGAGC TTCGACTTCC GTATATTCCT ATGCCTAAGC TGGATGAACT AATAAACCTC ACAGTAGACT 000960 000961 GAGGCTCTTA CACAAGTAGC TATAGCTAGT CATAGTCCAT TATCTCTGCA AATAAAACCT CCACGTACTT CCAACCATTT 001040 001041 ACCTCTCCTT CCACCACTAC CTCTTGATTC CACCCTGACA GAAGCAAACT TGCAAAGTCC CATTGCAAGG TATTTACTTT 001120 001121 AGCTCCCCAA ATAGGATTGT AA |
Predicted Small Protein
| Name | NONHSAT098621_smProtein_47:127 |
| Length | 27 |
| Molecular weight | 3139.7139 |
| Aromaticity | 0.192307692308 |
| Instability index | 63.8961538462 |
| Isoelectric point | 9.98443603516 |
| Runs | 5 |
| Runs residual | 0.0169946332737 |
| Runs probability | 0.016304539834 |
| Amino acid sequence | MYAIAFVFHLQAITRRNWLVVVKDFT |
| Secondary structure | LHHHHHHHHHHHHHHLLLEEEEEELL |
| PRMN | - |
| PiMo | - |
