Difference between revisions of "NONHSAT120461"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TGCACATTTAAGTTATGTATTACATGTCTTTAGTGGTGATCACTATTTTATCAGTTCCTCTGTCTTTCTTTATACCAAGTATGACTCATAAACCCAGTATTAATTTTCCAAGAGATTGGCATACTATTTGTATATACGCTTTTCTTTCAAATAATCTGGATTCCCAATGCCCACAATCATTGATCCTAAAGAAAATGTGGGAGTAGGTAGATAAACTCAAACATCCCTACCATCACCCCTGGTAGGAAATCACTGGTGTAATGTATGATACTAACATCTGCACCAATTACTCTTATAGGTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTATTCAGTTGCTGCTTACAATAGTTGATACCCCAGGATTTGGAGATGCAGTGGATAATAGTAATTGCTGGCAGCCTGTTATCAATTACATTGATAGTAAATTTGAGGACTACCTAAATGCAGAATCGCAAGTGAACAGATGTCAGATGCCTGGTAACAGGGTGCACTGTTGTTTATACTTCATTGCTCCTTCAGGACATGGGTCAGTAACCTGATACTTCTGATTCCTTTTTGTTGTTGTTGCTTACTGTTACCTTTATG</dnaseq>| | sequence = <dnaseq>TGCACATTTAAGTTATGTATTACATGTCTTTAGTGGTGATCACTATTTTATCAGTTCCTCTGTCTTTCTTTATACCAAGTATGACTCATAAACCCAGTATTAATTTTCCAAGAGATTGGCATACTATTTGTATATACGCTTTTCTTTCAAATAATCTGGATTCCCAATGCCCACAATCATTGATCCTAAAGAAAATGTGGGAGTAGGTAGATAAACTCAAACATCCCTACCATCACCCCTGGTAGGAAATCACTGGTGTAATGTATGATACTAACATCTGCACCAATTACTCTTATAGGTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTATTCAGTTGCTGCTTACAATAGTTGATACCCCAGGATTTGGAGATGCAGTGGATAATAGTAATTGCTGGCAGCCTGTTATCAATTACATTGATAGTAAATTTGAGGACTACCTAAATGCAGAATCGCAAGTGAACAGATGTCAGATGCCTGGTAACAGGGTGCACTGTTGTTTATACTTCATTGCTCCTTCAGGACATGGGTCAGTAACCTGATACTTCTGATTCCTTTTTGTTGTTGTTGCTTACTGTTACCTTTATG</dnaseq>| | ||
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− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG047517]] |
Revision as of 06:41, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT120461 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
593 nt |
Genomic location |
chr7-:45797583..45799071 |
Exon number |
2 |
Exons |
45797583..45797776,45798673..45799071 |
Genome context |
|
Sequence |
000001 TGCACATTTA AGTTATGTAT TACATGTCTT TAGTGGTGAT CACTATTTTA TCAGTTCCTC TGTCTTTCTT TATACCAAGT 000080
000081 ATGACTCATA AACCCAGTAT TAATTTTCCA AGAGATTGGC ATACTATTTG TATATACGCT TTTCTTTCAA ATAATCTGGA 000160 000161 TTCCCAATGC CCACAATCAT TGATCCTAAA GAAAATGTGG GAGTAGGTAG ATAAACTCAA ACATCCCTAC CATCACCCCT 000240 000241 GGTAGGAAAT CACTGGTGTA ATGTATGATA CTAACATCTG CACCAATTAC TCTTATAGGT GGAACAATCC AAAGTTTTAA 000320 000321 TCAAAGAAGG TGGTATTCAG TTGCTGCTTA CAATAGTTGA TACCCCAGGA TTTGGAGATG CAGTGGATAA TAGTAATTGC 000400 000401 TGGCAGCCTG TTATCAATTA CATTGATAGT AAATTTGAGG ACTACCTAAA TGCAGAATCG CAAGTGAACA GATGTCAGAT 000480 000481 GCCTGGTAAC AGGGTGCACT GTTGTTTATA CTTCATTGCT CCTTCAGGAC ATGGGTCAGT AACCTGATAC TTCTGATTCC 000560 000561 TTTTTGTTGT TGTTGCTTAC TGTTACCTTT ATG |
Predicted Small Protein
Name | NONHSAT120461_smProtein_14:205 |
Length | 64 |
Molecular weight | 7410.7393 |
Aromaticity | 0.142857142857 |
Instability index | 74.0698412698 |
Isoelectric point | 7.81732177734 |
Runs | 10 |
Runs residual | 0.0137674117266 |
Runs probability | 0.0447624094683 |
Amino acid sequence | MYYMSLVVITILSVPLSFFIPSMTHKPSINFPRDWHTICIYAFLSNNLDSQCPQSLILKK MWE |
Secondary structure | LEEEEEEEEEEEELLLEEEELLLLLLLLLLLLLLLLEEEEEHHHHLLLLLLLLHHHHHHH HHL |
PRMN | LLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLL |
PiMo | i??????????????????????????????????????????????????????????? ??? |