Difference between revisions of "NONHSAT001960"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TAGCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATATTGGCCAGGCTGTTCTCAACTCCTGACCTCGTGATCCGCCCACCTCAGCCTCCTAAAGTGCTGGGATTACAGCTGTGAGCCACCCTGCCCGGCCACTTTTGTATGATTTCTAATGTATTTGTAATTTACCTAACAAATTGCCTAATCTGCTATGTTAATGTATTTATGAATTAAAATAAATACGACTGCATGTTTGTGGTTCATTTTTGTGGAGGTGGCTGTGGTGACATCAGCCAAGAATCTGAATGGTACTGTTGAAGGAAACTAGCATGATAGCTTCAGTTCTAAAGGCCCTGAAACCTAGTCTCAGGTGGGTCCCCCTTGGGTTCACTTTATATTGGCAGTTTATTGGGAAAATGGATATTAGGTCCTGACCAATAGGACCGTAAGTCTGGGTTGAGTGCAAGATGAGTTAGACCGATTCTTTAGCTTCCTGCAGTGTAGTGGAGGAAAAATCGATGGTAGCAACGGGAGGTTGTATCCCTAGCTGATGAGTTGTATGAGCCTCTACTACCTGGCGCACCTCCGCCTGAAGATTGCCAGAATTGCTTGCCTCATGACGTGAGTCACAATGGAAACTTTGTCAAGCCCCCTGCACTGGCTGCCAACATAAATGTTCAGTACCCTGAAGGATGGGACTGAAGGGGGATCATCTAGAAGGTAAAGTTACCTACTGGCATAGGGGAGGTGGGACAGCCGTTAAGCCATTTGGAACTTGATGGAGACAGGTTTGAGGGAGGTGGGTGAGATTGGAGTTTGGTGGACTGTAGAGCTTGCTTGCCAAGGTGTTGAGGTCAGGGTTGGTTTGAGAATGGAAGCTAGTTACTAGCTATGATTGTGGGGGAACACAGCTTGATTTTTCTTACAAGCTAAGAGGAGTGAGGCAGTGTTTAAGAGGGCATGTTAAATGCAGCCAGGCTTGGTGGCTCACACCCGTAATCCCAGCACTTAGGCTAAGGCAGGCGGATCACAACATCTAGAGATCCTGGCCAACGCGGTGAAACCCTGTCTGTACTAAAAATACAAAATAACTGGGCATGGTGGTGTGCACCTGTGGGAGGCTGAGGCAGAATTGCTGGAACCCGGGAGATGGAGGTTGTACTGAGCTGAGACCTTGCCACTGCGCTCCAGCCTGGTGACAGAGTTAAGTCTCAAAAAAAAGGCATCTTCCTAAAGCAATTGTATTTGTGCTTACCTGTGCCAGGCACTGTTCTAGGTAAGCACTAAGTGGGCTTTAATACAGCATATTCCAATGGGGAATCCCAGGAACCAAAAGACTAATTGTCCAAGTCCACAACTAGAAGTGGCACCTCTGCAGAAACAAGCATCAAATTCCCTGCTCAGGAAGAAGCCAGATGAGTCAGCCCCATTCGTCTGTATGCCCAGTCCCATCCGTGTCCTGCTGTAACTACATAGATCTCACCT</dnaseq>| | sequence = <dnaseq>TAGCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATATTGGCCAGGCTGTTCTCAACTCCTGACCTCGTGATCCGCCCACCTCAGCCTCCTAAAGTGCTGGGATTACAGCTGTGAGCCACCCTGCCCGGCCACTTTTGTATGATTTCTAATGTATTTGTAATTTACCTAACAAATTGCCTAATCTGCTATGTTAATGTATTTATGAATTAAAATAAATACGACTGCATGTTTGTGGTTCATTTTTGTGGAGGTGGCTGTGGTGACATCAGCCAAGAATCTGAATGGTACTGTTGAAGGAAACTAGCATGATAGCTTCAGTTCTAAAGGCCCTGAAACCTAGTCTCAGGTGGGTCCCCCTTGGGTTCACTTTATATTGGCAGTTTATTGGGAAAATGGATATTAGGTCCTGACCAATAGGACCGTAAGTCTGGGTTGAGTGCAAGATGAGTTAGACCGATTCTTTAGCTTCCTGCAGTGTAGTGGAGGAAAAATCGATGGTAGCAACGGGAGGTTGTATCCCTAGCTGATGAGTTGTATGAGCCTCTACTACCTGGCGCACCTCCGCCTGAAGATTGCCAGAATTGCTTGCCTCATGACGTGAGTCACAATGGAAACTTTGTCAAGCCCCCTGCACTGGCTGCCAACATAAATGTTCAGTACCCTGAAGGATGGGACTGAAGGGGGATCATCTAGAAGGTAAAGTTACCTACTGGCATAGGGGAGGTGGGACAGCCGTTAAGCCATTTGGAACTTGATGGAGACAGGTTTGAGGGAGGTGGGTGAGATTGGAGTTTGGTGGACTGTAGAGCTTGCTTGCCAAGGTGTTGAGGTCAGGGTTGGTTTGAGAATGGAAGCTAGTTACTAGCTATGATTGTGGGGGAACACAGCTTGATTTTTCTTACAAGCTAAGAGGAGTGAGGCAGTGTTTAAGAGGGCATGTTAAATGCAGCCAGGCTTGGTGGCTCACACCCGTAATCCCAGCACTTAGGCTAAGGCAGGCGGATCACAACATCTAGAGATCCTGGCCAACGCGGTGAAACCCTGTCTGTACTAAAAATACAAAATAACTGGGCATGGTGGTGTGCACCTGTGGGAGGCTGAGGCAGAATTGCTGGAACCCGGGAGATGGAGGTTGTACTGAGCTGAGACCTTGCCACTGCGCTCCAGCCTGGTGACAGAGTTAAGTCTCAAAAAAAAGGCATCTTCCTAAAGCAATTGTATTTGTGCTTACCTGTGCCAGGCACTGTTCTAGGTAAGCACTAAGTGGGCTTTAATACAGCATATTCCAATGGGGAATCCCAGGAACCAAAAGACTAATTGTCCAAGTCCACAACTAGAAGTGGCACCTCTGCAGAAACAAGCATCAAATTCCCTGCTCAGGAAGAAGCCAGATGAGTCAGCCCCATTCGTCTGTATGCCCAGTCCCATCCGTGTCCTGCTGTAACTACATAGATCTCACCT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG000835]] |
Revision as of 06:48, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001960 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1480 nt |
Genomic location |
chr1+:28835902..28837381 |
Exon number |
1 |
Exons |
28835902..28837381 |
Genome context |
|
Sequence |
000001 TAGCACCACA CCTGGCTAAT TTTTGTATTT TTAGTAGAGA TGAGGTTTCA CCATATTGGC CAGGCTGTTC TCAACTCCTG 000080
000081 ACCTCGTGAT CCGCCCACCT CAGCCTCCTA AAGTGCTGGG ATTACAGCTG TGAGCCACCC TGCCCGGCCA CTTTTGTATG 000160 000161 ATTTCTAATG TATTTGTAAT TTACCTAACA AATTGCCTAA TCTGCTATGT TAATGTATTT ATGAATTAAA ATAAATACGA 000240 000241 CTGCATGTTT GTGGTTCATT TTTGTGGAGG TGGCTGTGGT GACATCAGCC AAGAATCTGA ATGGTACTGT TGAAGGAAAC 000320 000321 TAGCATGATA GCTTCAGTTC TAAAGGCCCT GAAACCTAGT CTCAGGTGGG TCCCCCTTGG GTTCACTTTA TATTGGCAGT 000400 000401 TTATTGGGAA AATGGATATT AGGTCCTGAC CAATAGGACC GTAAGTCTGG GTTGAGTGCA AGATGAGTTA GACCGATTCT 000480 000481 TTAGCTTCCT GCAGTGTAGT GGAGGAAAAA TCGATGGTAG CAACGGGAGG TTGTATCCCT AGCTGATGAG TTGTATGAGC 000560 000561 CTCTACTACC TGGCGCACCT CCGCCTGAAG ATTGCCAGAA TTGCTTGCCT CATGACGTGA GTCACAATGG AAACTTTGTC 000640 000641 AAGCCCCCTG CACTGGCTGC CAACATAAAT GTTCAGTACC CTGAAGGATG GGACTGAAGG GGGATCATCT AGAAGGTAAA 000720 000721 GTTACCTACT GGCATAGGGG AGGTGGGACA GCCGTTAAGC CATTTGGAAC TTGATGGAGA CAGGTTTGAG GGAGGTGGGT 000800 000801 GAGATTGGAG TTTGGTGGAC TGTAGAGCTT GCTTGCCAAG GTGTTGAGGT CAGGGTTGGT TTGAGAATGG AAGCTAGTTA 000880 000881 CTAGCTATGA TTGTGGGGGA ACACAGCTTG ATTTTTCTTA CAAGCTAAGA GGAGTGAGGC AGTGTTTAAG AGGGCATGTT 000960 000961 AAATGCAGCC AGGCTTGGTG GCTCACACCC GTAATCCCAG CACTTAGGCT AAGGCAGGCG GATCACAACA TCTAGAGATC 001040 001041 CTGGCCAACG CGGTGAAACC CTGTCTGTAC TAAAAATACA AAATAACTGG GCATGGTGGT GTGCACCTGT GGGAGGCTGA 001120 001121 GGCAGAATTG CTGGAACCCG GGAGATGGAG GTTGTACTGA GCTGAGACCT TGCCACTGCG CTCCAGCCTG GTGACAGAGT 001200 001201 TAAGTCTCAA AAAAAAGGCA TCTTCCTAAA GCAATTGTAT TTGTGCTTAC CTGTGCCAGG CACTGTTCTA GGTAAGCACT 001280 001281 AAGTGGGCTT TAATACAGCA TATTCCAATG GGGAATCCCA GGAACCAAAA GACTAATTGT CCAAGTCCAC AACTAGAAGT 001360 001361 GGCACCTCTG CAGAAACAAG CATCAAATTC CCTGCTCAGG AAGAAGCCAG ATGAGTCAGC CCCATTCGTC TGTATGCCCA 001440 001441 GTCCCATCCG TGTCCTGCTG TAACTACATA GATCTCACCT |
Predicted Small Protein
Name | NONHSAT001960_smProtein_1307:1462 |
Length | 52 |
Molecular weight | 5630.549 |
Aromaticity | 0.0196078431373 |
Instability index | 77.8235294118 |
Isoelectric point | 9.69427490234 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.0374688413904 |
Amino acid sequence | MGNPRNQKTNCPSPQLEVAPLQKQASNSLLRKKPDESAPFVCMPSPIRVLL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHHHLHHHHLLLLLLLLLEEELLLLEEEEL |
PRMN | - |
PiMo | - |