Difference between revisions of "NONHSAT076980"

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sequence = <dnaseq>AAACTCTGACCTCTTACTCTCTCTACTTAACTCTGGTCCCGGGCAGCCAAGACAAAGCGAAAGGCAAGGCAGCATGAGCCGATCACCCCTCAATCCCAGCCAACTCCGATCAGTGGGCTCCCAGGATGCCCTGGCCCCCTTGCCTCCACCTGCTCCCCAGAATCCCTCCACCCACTCTTGGGACCCTTTGTGTGGATCTCTGCCTTGGGGCCTCAGCTGTCTTCTGGCTCTGCAGCTCCTGGCCTCCAGCTTCTTTTCATGTGGTATGTCTACCATCCTGCAAACTTGGATGGGCAGCAGGCTGCCTCTTGTCCAGGCTCCATCCTTAGAGTTCCTTATCCCTGCTCTGGTGCTGACCAGCCAGAAGCTACCCCGGGCCATCCAGACACCTGGAAACTCCTCCCTCATGCTGCACCTTTGTAGGGGACCTAGCTGCCATGGCCTGGGGCACTGGAACACTTCTCTCCAGGAGGTGTCCGGGGCAGTGGTAGTATCTGGGCTGCTGCAGGGCATGATGGGGCTGCTGGGGAGTCCCGGCCACGTGTTCCCCCACTGTGGGCCCCTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTCTCTGCCCACAGGGAGGTAGCCCAGTTCTGCTTCACACACTGGGGGTTGGCCTTGCTGTACGTGAGTCCTGAGAGGCGTGGGATGGTGCCCAGTGGGGGTGTATGGGGGGACTAGGGGAGGGCAGAACTGCTGGTCCTATCAGATTCAGCAGCGACTGGAATAGGGACATATTTTATATTTGGAATCCAAGACTTTTCCTTGATTCATCTGGTCTCCTTGAATTTCACACTGTTTTCTGCTGTCCCCCAAGGTCACTTCCTATTCCTTCCATGGGAGTTTCCTTCTCTGGTATCACCCCCCGCTCTTATGATATTCTGCCCACTCCCACCTCCTTTCCCATCCCTCAGGATACCCACTGCCTCTTGCTCCTAAAGCCTTCTGTCTCCTAGGGTTATCCTGCTCATGGTGGTCTGTTCTCAGCACCTGGGCTCCTGCCAGTTTCATGTGTGCCCCTGGAGGCGAGCTTCAACGTCATCAACTCACACTCCTCTCCCTGTCTTCCGGCTCCTTTCGGTATGTGTGGGTCTGGGCAGGGCAGTAGAGGTCAGAAGGGCTGGCCTGGAGTGCTCACTCCATCCCCTACCTTTTGGCTTCTGTCTACCCCTGCAAGGCTGGCTCAGAAGGTTCTGGGGGAGGAGTTCTTTTCTCAGTCTCGCCCCTCAGGTGCTGATCCCAGTGGCCTGTGTGTGGATTGTTTCTGCCTTTGTGGGATTCAGTGTTATCCCCCAGGAACTGTCTGCCCCCACCAAGGCACCATGGATTTGGCTGCCTCACCCAGGTGAGTGGAATTGGCCTTTGCTGACGCCCAGAGCTCTGGCTGCAGGCATCTCCATGGCCTTGGCAGCCTCCACCAGTTCCCTGGGCTGCTATGCCCTGTGTGGCCGGCTGCTGCATTTGCCTCCCCCACCTCCACATGCCTGCAGTCGAGGGCTGAGCCTGGAGGGGCTGGGCAGTGTGCTGGCCGGGCTGCTGGGAAGCCCCATGGGCACTGCATCCAGCTTCCCCAACGTGGGCAAAGTGGGTCTTATCCAGGTACGTGGACCTGGGATGGGAGTGGGGTAGGATGGAGCTAGAGGGGAAGAAGAAGGACAGGAACTTACACCGATTGATTGCCAGGTGTGCCTAGCACCTCACATCAACTATCTTACTTGGGGAGGTGCCTAAGATTAGACTTTGGGCTAAGAGAGTGGGGAAGTGAACAAATCACCACGGAActcctgtgcatgaggcactgtatcaaggctagggcaaagaaccagtcacataaagttctgctctcttggggacttcatagagggagaggcagacagttgaaggaaaaaagtatctttttaaaaaagtgggccaggcatggtggctcacacctgtaatcctagcacgtggggaggctgaggcaggcagatcacttaggctaggaattcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtgttgtgcacctataattccagctactcaggaggctgaggcaggagaatcgcttgagcctgggaggcagaggttgctgtgagccgagaccgcaccactgcactccagcctgggcgacagagcgagactccatctc</dnaseq>|
 
sequence = <dnaseq>AAACTCTGACCTCTTACTCTCTCTACTTAACTCTGGTCCCGGGCAGCCAAGACAAAGCGAAAGGCAAGGCAGCATGAGCCGATCACCCCTCAATCCCAGCCAACTCCGATCAGTGGGCTCCCAGGATGCCCTGGCCCCCTTGCCTCCACCTGCTCCCCAGAATCCCTCCACCCACTCTTGGGACCCTTTGTGTGGATCTCTGCCTTGGGGCCTCAGCTGTCTTCTGGCTCTGCAGCTCCTGGCCTCCAGCTTCTTTTCATGTGGTATGTCTACCATCCTGCAAACTTGGATGGGCAGCAGGCTGCCTCTTGTCCAGGCTCCATCCTTAGAGTTCCTTATCCCTGCTCTGGTGCTGACCAGCCAGAAGCTACCCCGGGCCATCCAGACACCTGGAAACTCCTCCCTCATGCTGCACCTTTGTAGGGGACCTAGCTGCCATGGCCTGGGGCACTGGAACACTTCTCTCCAGGAGGTGTCCGGGGCAGTGGTAGTATCTGGGCTGCTGCAGGGCATGATGGGGCTGCTGGGGAGTCCCGGCCACGTGTTCCCCCACTGTGGGCCCCTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTCTCTGCCCACAGGGAGGTAGCCCAGTTCTGCTTCACACACTGGGGGTTGGCCTTGCTGTACGTGAGTCCTGAGAGGCGTGGGATGGTGCCCAGTGGGGGTGTATGGGGGGACTAGGGGAGGGCAGAACTGCTGGTCCTATCAGATTCAGCAGCGACTGGAATAGGGACATATTTTATATTTGGAATCCAAGACTTTTCCTTGATTCATCTGGTCTCCTTGAATTTCACACTGTTTTCTGCTGTCCCCCAAGGTCACTTCCTATTCCTTCCATGGGAGTTTCCTTCTCTGGTATCACCCCCCGCTCTTATGATATTCTGCCCACTCCCACCTCCTTTCCCATCCCTCAGGATACCCACTGCCTCTTGCTCCTAAAGCCTTCTGTCTCCTAGGGTTATCCTGCTCATGGTGGTCTGTTCTCAGCACCTGGGCTCCTGCCAGTTTCATGTGTGCCCCTGGAGGCGAGCTTCAACGTCATCAACTCACACTCCTCTCCCTGTCTTCCGGCTCCTTTCGGTATGTGTGGGTCTGGGCAGGGCAGTAGAGGTCAGAAGGGCTGGCCTGGAGTGCTCACTCCATCCCCTACCTTTTGGCTTCTGTCTACCCCTGCAAGGCTGGCTCAGAAGGTTCTGGGGGAGGAGTTCTTTTCTCAGTCTCGCCCCTCAGGTGCTGATCCCAGTGGCCTGTGTGTGGATTGTTTCTGCCTTTGTGGGATTCAGTGTTATCCCCCAGGAACTGTCTGCCCCCACCAAGGCACCATGGATTTGGCTGCCTCACCCAGGTGAGTGGAATTGGCCTTTGCTGACGCCCAGAGCTCTGGCTGCAGGCATCTCCATGGCCTTGGCAGCCTCCACCAGTTCCCTGGGCTGCTATGCCCTGTGTGGCCGGCTGCTGCATTTGCCTCCCCCACCTCCACATGCCTGCAGTCGAGGGCTGAGCCTGGAGGGGCTGGGCAGTGTGCTGGCCGGGCTGCTGGGAAGCCCCATGGGCACTGCATCCAGCTTCCCCAACGTGGGCAAAGTGGGTCTTATCCAGGTACGTGGACCTGGGATGGGAGTGGGGTAGGATGGAGCTAGAGGGGAAGAAGAAGGACAGGAACTTACACCGATTGATTGCCAGGTGTGCCTAGCACCTCACATCAACTATCTTACTTGGGGAGGTGCCTAAGATTAGACTTTGGGCTAAGAGAGTGGGGAAGTGAACAAATCACCACGGAActcctgtgcatgaggcactgtatcaaggctagggcaaagaaccagtcacataaagttctgctctcttggggacttcatagagggagaggcagacagttgaaggaaaaaagtatctttttaaaaaagtgggccaggcatggtggctcacacctgtaatcctagcacgtggggaggctgaggcaggcagatcacttaggctaggaattcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtgttgtgcacctataattccagctactcaggaggctgaggcaggagaatcgcttgagcctgggaggcagaggttgctgtgagccgagaccgcaccactgcactccagcctgggcgacagagcgagactccatctc</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG030560]]

Revision as of 06:54, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT076980

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2221 nt

Genomic location

chr2-:220029300..220034779

Exon number

6

Exons

220029300..220030144,220032652..220033555,220033751..220033824,220034031..220034128,220034243..220034307,220034545..220034779

Genome context

Sequence
000001 AAACTCTGAC CTCTTACTCT CTCTACTTAA CTCTGGTCCC GGGCAGCCAA GACAAAGCGA AAGGCAAGGC AGCATGAGCC 000080
000081 GATCACCCCT CAATCCCAGC CAACTCCGAT CAGTGGGCTC CCAGGATGCC CTGGCCCCCT TGCCTCCACC TGCTCCCCAG 000160
000161 AATCCCTCCA CCCACTCTTG GGACCCTTTG TGTGGATCTC TGCCTTGGGG CCTCAGCTGT CTTCTGGCTC TGCAGCTCCT 000240
000241 GGCCTCCAGC TTCTTTTCAT GTGGTATGTC TACCATCCTG CAAACTTGGA TGGGCAGCAG GCTGCCTCTT GTCCAGGCTC 000320
000321 CATCCTTAGA GTTCCTTATC CCTGCTCTGG TGCTGACCAG CCAGAAGCTA CCCCGGGCCA TCCAGACACC TGGAAACTCC 000400
000401 TCCCTCATGC TGCACCTTTG TAGGGGACCT AGCTGCCATG GCCTGGGGCA CTGGAACACT TCTCTCCAGG AGGTGTCCGG 000480
000481 GGCAGTGGTA GTATCTGGGC TGCTGCAGGG CATGATGGGG CTGCTGGGGA GTCCCGGCCA CGTGTTCCCC CACTGTGGGC 000560
000561 CCCTGGTGCT GGCTCCCAGC CTGGTTGTGG CAGGGCTCTC TGCCCACAGG GAGGTAGCCC AGTTCTGCTT CACACACTGG 000640
000641 GGGTTGGCCT TGCTGTACGT GAGTCCTGAG AGGCGTGGGA TGGTGCCCAG TGGGGGTGTA TGGGGGGACT AGGGGAGGGC 000720
000721 AGAACTGCTG GTCCTATCAG ATTCAGCAGC GACTGGAATA GGGACATATT TTATATTTGG AATCCAAGAC TTTTCCTTGA 000800
000801 TTCATCTGGT CTCCTTGAAT TTCACACTGT TTTCTGCTGT CCCCCAAGGT CACTTCCTAT TCCTTCCATG GGAGTTTCCT 000880
000881 TCTCTGGTAT CACCCCCCGC TCTTATGATA TTCTGCCCAC TCCCACCTCC TTTCCCATCC CTCAGGATAC CCACTGCCTC 000960
000961 TTGCTCCTAA AGCCTTCTGT CTCCTAGGGT TATCCTGCTC ATGGTGGTCT GTTCTCAGCA CCTGGGCTCC TGCCAGTTTC 001040
001041 ATGTGTGCCC CTGGAGGCGA GCTTCAACGT CATCAACTCA CACTCCTCTC CCTGTCTTCC GGCTCCTTTC GGTATGTGTG 001120
001121 GGTCTGGGCA GGGCAGTAGA GGTCAGAAGG GCTGGCCTGG AGTGCTCACT CCATCCCCTA CCTTTTGGCT TCTGTCTACC 001200
001201 CCTGCAAGGC TGGCTCAGAA GGTTCTGGGG GAGGAGTTCT TTTCTCAGTC TCGCCCCTCA GGTGCTGATC CCAGTGGCCT 001280
001281 GTGTGTGGAT TGTTTCTGCC TTTGTGGGAT TCAGTGTTAT CCCCCAGGAA CTGTCTGCCC CCACCAAGGC ACCATGGATT 001360
001361 TGGCTGCCTC ACCCAGGTGA GTGGAATTGG CCTTTGCTGA CGCCCAGAGC TCTGGCTGCA GGCATCTCCA TGGCCTTGGC 001440
001441 AGCCTCCACC AGTTCCCTGG GCTGCTATGC CCTGTGTGGC CGGCTGCTGC ATTTGCCTCC CCCACCTCCA CATGCCTGCA 001520
001521 GTCGAGGGCT GAGCCTGGAG GGGCTGGGCA GTGTGCTGGC CGGGCTGCTG GGAAGCCCCA TGGGCACTGC ATCCAGCTTC 001600
001601 CCCAACGTGG GCAAAGTGGG TCTTATCCAG GTACGTGGAC CTGGGATGGG AGTGGGGTAG GATGGAGCTA GAGGGGAAGA 001680
001681 AGAAGGACAG GAACTTACAC CGATTGATTG CCAGGTGTGC CTAGCACCTC ACATCAACTA TCTTACTTGG GGAGGTGCCT 001760
001761 AAGATTAGAC TTTGGGCTAA GAGAGTGGGG AAGTGAACAA ATCACCACGG AActcctgtg catgaggcac tgtatcaagg 001840
001841 ctagggcaaa gaaccagtca cataaagttc tgctctcttg gggacttcat agagggagag gcagacagtt gaaggaaaaa 001920
001921 agtatctttt taaaaaagtg ggccaggcat ggtggctcac acctgtaatc ctagcacgtg gggaggctga ggcaggcaga 002000
002001 tcacttaggc taggaattca agaccagcct ggccaacatg gtgaaaccct gtctctacta aaaatacaaa aattagctgg 002080
002081 gcatggtgtt gtgcacctat aattccagct actcaggagg ctgaggcagg agaatcgctt gagcctggga ggcagaggtt 002160
002161 gctgtgagcc gagaccgcac cactgcactc cagcctgggc gacagagcga gactccatct c
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Predicted Small Protein

Name NONHSAT076980_smProtein_125:328
Length 68
Molecular weight 7234.7117
Aromaticity 0.089552238806
Instability index 52.2492537313
Isoelectric point 8.24761962891
Runs 9
Runs residual 0.00898648120653
Runs probability 0.0926907299456
Amino acid sequence MPWPPCLHLLPRIPPPTLGTLCVDLCLGASAVFWLCSSWPPASFHVVCLPSCKLGWAAGC
LLSRLHP
Secondary structure LLLLLLLLLLLLLLLLLLLHHHHHHHLLLLEEEEELLLLLLLLEEEEELLLLLLLHHHHH
HHHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL
LLLLLLL
PiMo ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii
iiiiiii