Difference between revisions of "NONHSAT076980"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AAACTCTGACCTCTTACTCTCTCTACTTAACTCTGGTCCCGGGCAGCCAAGACAAAGCGAAAGGCAAGGCAGCATGAGCCGATCACCCCTCAATCCCAGCCAACTCCGATCAGTGGGCTCCCAGGATGCCCTGGCCCCCTTGCCTCCACCTGCTCCCCAGAATCCCTCCACCCACTCTTGGGACCCTTTGTGTGGATCTCTGCCTTGGGGCCTCAGCTGTCTTCTGGCTCTGCAGCTCCTGGCCTCCAGCTTCTTTTCATGTGGTATGTCTACCATCCTGCAAACTTGGATGGGCAGCAGGCTGCCTCTTGTCCAGGCTCCATCCTTAGAGTTCCTTATCCCTGCTCTGGTGCTGACCAGCCAGAAGCTACCCCGGGCCATCCAGACACCTGGAAACTCCTCCCTCATGCTGCACCTTTGTAGGGGACCTAGCTGCCATGGCCTGGGGCACTGGAACACTTCTCTCCAGGAGGTGTCCGGGGCAGTGGTAGTATCTGGGCTGCTGCAGGGCATGATGGGGCTGCTGGGGAGTCCCGGCCACGTGTTCCCCCACTGTGGGCCCCTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTCTCTGCCCACAGGGAGGTAGCCCAGTTCTGCTTCACACACTGGGGGTTGGCCTTGCTGTACGTGAGTCCTGAGAGGCGTGGGATGGTGCCCAGTGGGGGTGTATGGGGGGACTAGGGGAGGGCAGAACTGCTGGTCCTATCAGATTCAGCAGCGACTGGAATAGGGACATATTTTATATTTGGAATCCAAGACTTTTCCTTGATTCATCTGGTCTCCTTGAATTTCACACTGTTTTCTGCTGTCCCCCAAGGTCACTTCCTATTCCTTCCATGGGAGTTTCCTTCTCTGGTATCACCCCCCGCTCTTATGATATTCTGCCCACTCCCACCTCCTTTCCCATCCCTCAGGATACCCACTGCCTCTTGCTCCTAAAGCCTTCTGTCTCCTAGGGTTATCCTGCTCATGGTGGTCTGTTCTCAGCACCTGGGCTCCTGCCAGTTTCATGTGTGCCCCTGGAGGCGAGCTTCAACGTCATCAACTCACACTCCTCTCCCTGTCTTCCGGCTCCTTTCGGTATGTGTGGGTCTGGGCAGGGCAGTAGAGGTCAGAAGGGCTGGCCTGGAGTGCTCACTCCATCCCCTACCTTTTGGCTTCTGTCTACCCCTGCAAGGCTGGCTCAGAAGGTTCTGGGGGAGGAGTTCTTTTCTCAGTCTCGCCCCTCAGGTGCTGATCCCAGTGGCCTGTGTGTGGATTGTTTCTGCCTTTGTGGGATTCAGTGTTATCCCCCAGGAACTGTCTGCCCCCACCAAGGCACCATGGATTTGGCTGCCTCACCCAGGTGAGTGGAATTGGCCTTTGCTGACGCCCAGAGCTCTGGCTGCAGGCATCTCCATGGCCTTGGCAGCCTCCACCAGTTCCCTGGGCTGCTATGCCCTGTGTGGCCGGCTGCTGCATTTGCCTCCCCCACCTCCACATGCCTGCAGTCGAGGGCTGAGCCTGGAGGGGCTGGGCAGTGTGCTGGCCGGGCTGCTGGGAAGCCCCATGGGCACTGCATCCAGCTTCCCCAACGTGGGCAAAGTGGGTCTTATCCAGGTACGTGGACCTGGGATGGGAGTGGGGTAGGATGGAGCTAGAGGGGAAGAAGAAGGACAGGAACTTACACCGATTGATTGCCAGGTGTGCCTAGCACCTCACATCAACTATCTTACTTGGGGAGGTGCCTAAGATTAGACTTTGGGCTAAGAGAGTGGGGAAGTGAACAAATCACCACGGAActcctgtgcatgaggcactgtatcaaggctagggcaaagaaccagtcacataaagttctgctctcttggggacttcatagagggagaggcagacagttgaaggaaaaaagtatctttttaaaaaagtgggccaggcatggtggctcacacctgtaatcctagcacgtggggaggctgaggcaggcagatcacttaggctaggaattcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtgttgtgcacctataattccagctactcaggaggctgaggcaggagaatcgcttgagcctgggaggcagaggttgctgtgagccgagaccgcaccactgcactccagcctgggcgacagagcgagactccatctc</dnaseq>| | sequence = <dnaseq>AAACTCTGACCTCTTACTCTCTCTACTTAACTCTGGTCCCGGGCAGCCAAGACAAAGCGAAAGGCAAGGCAGCATGAGCCGATCACCCCTCAATCCCAGCCAACTCCGATCAGTGGGCTCCCAGGATGCCCTGGCCCCCTTGCCTCCACCTGCTCCCCAGAATCCCTCCACCCACTCTTGGGACCCTTTGTGTGGATCTCTGCCTTGGGGCCTCAGCTGTCTTCTGGCTCTGCAGCTCCTGGCCTCCAGCTTCTTTTCATGTGGTATGTCTACCATCCTGCAAACTTGGATGGGCAGCAGGCTGCCTCTTGTCCAGGCTCCATCCTTAGAGTTCCTTATCCCTGCTCTGGTGCTGACCAGCCAGAAGCTACCCCGGGCCATCCAGACACCTGGAAACTCCTCCCTCATGCTGCACCTTTGTAGGGGACCTAGCTGCCATGGCCTGGGGCACTGGAACACTTCTCTCCAGGAGGTGTCCGGGGCAGTGGTAGTATCTGGGCTGCTGCAGGGCATGATGGGGCTGCTGGGGAGTCCCGGCCACGTGTTCCCCCACTGTGGGCCCCTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTCTCTGCCCACAGGGAGGTAGCCCAGTTCTGCTTCACACACTGGGGGTTGGCCTTGCTGTACGTGAGTCCTGAGAGGCGTGGGATGGTGCCCAGTGGGGGTGTATGGGGGGACTAGGGGAGGGCAGAACTGCTGGTCCTATCAGATTCAGCAGCGACTGGAATAGGGACATATTTTATATTTGGAATCCAAGACTTTTCCTTGATTCATCTGGTCTCCTTGAATTTCACACTGTTTTCTGCTGTCCCCCAAGGTCACTTCCTATTCCTTCCATGGGAGTTTCCTTCTCTGGTATCACCCCCCGCTCTTATGATATTCTGCCCACTCCCACCTCCTTTCCCATCCCTCAGGATACCCACTGCCTCTTGCTCCTAAAGCCTTCTGTCTCCTAGGGTTATCCTGCTCATGGTGGTCTGTTCTCAGCACCTGGGCTCCTGCCAGTTTCATGTGTGCCCCTGGAGGCGAGCTTCAACGTCATCAACTCACACTCCTCTCCCTGTCTTCCGGCTCCTTTCGGTATGTGTGGGTCTGGGCAGGGCAGTAGAGGTCAGAAGGGCTGGCCTGGAGTGCTCACTCCATCCCCTACCTTTTGGCTTCTGTCTACCCCTGCAAGGCTGGCTCAGAAGGTTCTGGGGGAGGAGTTCTTTTCTCAGTCTCGCCCCTCAGGTGCTGATCCCAGTGGCCTGTGTGTGGATTGTTTCTGCCTTTGTGGGATTCAGTGTTATCCCCCAGGAACTGTCTGCCCCCACCAAGGCACCATGGATTTGGCTGCCTCACCCAGGTGAGTGGAATTGGCCTTTGCTGACGCCCAGAGCTCTGGCTGCAGGCATCTCCATGGCCTTGGCAGCCTCCACCAGTTCCCTGGGCTGCTATGCCCTGTGTGGCCGGCTGCTGCATTTGCCTCCCCCACCTCCACATGCCTGCAGTCGAGGGCTGAGCCTGGAGGGGCTGGGCAGTGTGCTGGCCGGGCTGCTGGGAAGCCCCATGGGCACTGCATCCAGCTTCCCCAACGTGGGCAAAGTGGGTCTTATCCAGGTACGTGGACCTGGGATGGGAGTGGGGTAGGATGGAGCTAGAGGGGAAGAAGAAGGACAGGAACTTACACCGATTGATTGCCAGGTGTGCCTAGCACCTCACATCAACTATCTTACTTGGGGAGGTGCCTAAGATTAGACTTTGGGCTAAGAGAGTGGGGAAGTGAACAAATCACCACGGAActcctgtgcatgaggcactgtatcaaggctagggcaaagaaccagtcacataaagttctgctctcttggggacttcatagagggagaggcagacagttgaaggaaaaaagtatctttttaaaaaagtgggccaggcatggtggctcacacctgtaatcctagcacgtggggaggctgaggcaggcagatcacttaggctaggaattcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtgttgtgcacctataattccagctactcaggaggctgaggcaggagaatcgcttgagcctgggaggcagaggttgctgtgagccgagaccgcaccactgcactccagcctgggcgacagagcgagactccatctc</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG030560]] |
Revision as of 06:54, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT076980 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2221 nt |
Genomic location |
chr2-:220029300..220034779 |
Exon number |
6 |
Exons |
220029300..220030144,220032652..220033555,220033751..220033824,220034031..220034128,220034243..220034307,220034545..220034779 |
Genome context |
|
Sequence |
000001 AAACTCTGAC CTCTTACTCT CTCTACTTAA CTCTGGTCCC GGGCAGCCAA GACAAAGCGA AAGGCAAGGC AGCATGAGCC 000080
000081 GATCACCCCT CAATCCCAGC CAACTCCGAT CAGTGGGCTC CCAGGATGCC CTGGCCCCCT TGCCTCCACC TGCTCCCCAG 000160 000161 AATCCCTCCA CCCACTCTTG GGACCCTTTG TGTGGATCTC TGCCTTGGGG CCTCAGCTGT CTTCTGGCTC TGCAGCTCCT 000240 000241 GGCCTCCAGC TTCTTTTCAT GTGGTATGTC TACCATCCTG CAAACTTGGA TGGGCAGCAG GCTGCCTCTT GTCCAGGCTC 000320 000321 CATCCTTAGA GTTCCTTATC CCTGCTCTGG TGCTGACCAG CCAGAAGCTA CCCCGGGCCA TCCAGACACC TGGAAACTCC 000400 000401 TCCCTCATGC TGCACCTTTG TAGGGGACCT AGCTGCCATG GCCTGGGGCA CTGGAACACT TCTCTCCAGG AGGTGTCCGG 000480 000481 GGCAGTGGTA GTATCTGGGC TGCTGCAGGG CATGATGGGG CTGCTGGGGA GTCCCGGCCA CGTGTTCCCC CACTGTGGGC 000560 000561 CCCTGGTGCT GGCTCCCAGC CTGGTTGTGG CAGGGCTCTC TGCCCACAGG GAGGTAGCCC AGTTCTGCTT CACACACTGG 000640 000641 GGGTTGGCCT TGCTGTACGT GAGTCCTGAG AGGCGTGGGA TGGTGCCCAG TGGGGGTGTA TGGGGGGACT AGGGGAGGGC 000720 000721 AGAACTGCTG GTCCTATCAG ATTCAGCAGC GACTGGAATA GGGACATATT TTATATTTGG AATCCAAGAC TTTTCCTTGA 000800 000801 TTCATCTGGT CTCCTTGAAT TTCACACTGT TTTCTGCTGT CCCCCAAGGT CACTTCCTAT TCCTTCCATG GGAGTTTCCT 000880 000881 TCTCTGGTAT CACCCCCCGC TCTTATGATA TTCTGCCCAC TCCCACCTCC TTTCCCATCC CTCAGGATAC CCACTGCCTC 000960 000961 TTGCTCCTAA AGCCTTCTGT CTCCTAGGGT TATCCTGCTC ATGGTGGTCT GTTCTCAGCA CCTGGGCTCC TGCCAGTTTC 001040 001041 ATGTGTGCCC CTGGAGGCGA GCTTCAACGT CATCAACTCA CACTCCTCTC CCTGTCTTCC GGCTCCTTTC GGTATGTGTG 001120 001121 GGTCTGGGCA GGGCAGTAGA GGTCAGAAGG GCTGGCCTGG AGTGCTCACT CCATCCCCTA CCTTTTGGCT TCTGTCTACC 001200 001201 CCTGCAAGGC TGGCTCAGAA GGTTCTGGGG GAGGAGTTCT TTTCTCAGTC TCGCCCCTCA GGTGCTGATC CCAGTGGCCT 001280 001281 GTGTGTGGAT TGTTTCTGCC TTTGTGGGAT TCAGTGTTAT CCCCCAGGAA CTGTCTGCCC CCACCAAGGC ACCATGGATT 001360 001361 TGGCTGCCTC ACCCAGGTGA GTGGAATTGG CCTTTGCTGA CGCCCAGAGC TCTGGCTGCA GGCATCTCCA TGGCCTTGGC 001440 001441 AGCCTCCACC AGTTCCCTGG GCTGCTATGC CCTGTGTGGC CGGCTGCTGC ATTTGCCTCC CCCACCTCCA CATGCCTGCA 001520 001521 GTCGAGGGCT GAGCCTGGAG GGGCTGGGCA GTGTGCTGGC CGGGCTGCTG GGAAGCCCCA TGGGCACTGC ATCCAGCTTC 001600 001601 CCCAACGTGG GCAAAGTGGG TCTTATCCAG GTACGTGGAC CTGGGATGGG AGTGGGGTAG GATGGAGCTA GAGGGGAAGA 001680 001681 AGAAGGACAG GAACTTACAC CGATTGATTG CCAGGTGTGC CTAGCACCTC ACATCAACTA TCTTACTTGG GGAGGTGCCT 001760 001761 AAGATTAGAC TTTGGGCTAA GAGAGTGGGG AAGTGAACAA ATCACCACGG AActcctgtg catgaggcac tgtatcaagg 001840 001841 ctagggcaaa gaaccagtca cataaagttc tgctctcttg gggacttcat agagggagag gcagacagtt gaaggaaaaa 001920 001921 agtatctttt taaaaaagtg ggccaggcat ggtggctcac acctgtaatc ctagcacgtg gggaggctga ggcaggcaga 002000 002001 tcacttaggc taggaattca agaccagcct ggccaacatg gtgaaaccct gtctctacta aaaatacaaa aattagctgg 002080 002081 gcatggtgtt gtgcacctat aattccagct actcaggagg ctgaggcagg agaatcgctt gagcctggga ggcagaggtt 002160 002161 gctgtgagcc gagaccgcac cactgcactc cagcctgggc gacagagcga gactccatct c |
Predicted Small Protein
Name | NONHSAT076980_smProtein_125:328 |
Length | 68 |
Molecular weight | 7234.7117 |
Aromaticity | 0.089552238806 |
Instability index | 52.2492537313 |
Isoelectric point | 8.24761962891 |
Runs | 9 |
Runs residual | 0.00898648120653 |
Runs probability | 0.0926907299456 |
Amino acid sequence | MPWPPCLHLLPRIPPPTLGTLCVDLCLGASAVFWLCSSWPPASFHVVCLPSCKLGWAAGC LLSRLHP |
Secondary structure | LLLLLLLLLLLLLLLLLLLHHHHHHHLLLLEEEEELLLLLLLLEEEEELLLLLLLHHHHH HHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL LLLLLLL |
PiMo | ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii iiiiiii |