Difference between revisions of "NONHSAT142830"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AAGCTTTTTGCTGGATTACAAAGTCTTCTCTGGTCGTGGCCACGGTCTGTCTACCCCACTCAGCGCCCGCCCTGTGTCCACACATGCTTGTCAGACTGGACTGAGGAAGCCCACAACTGGGCCTCTCAGTTTCCGGGTCCAATCTAAGCTACCAGACCAGCTCTGCCAAACCAGAGGCCCAGATGGGATCTGCCACTCCAGCCACTGTGAGCAGCTTTGGTTTCAGCCCAAATGCCAGGACTCGAGAAGTGTCGACAAGGTTGAGgttccgggatacatgtgcagaacatgcaggtttgttacataggtaaacatgtgccatggtggtttgctgtacctatcaacccattatgtcctccacttcttccaccttggctacccctgagatagcaagaccaatccttcctcttcttcctccttctcagtctacacaacaagaagacgacaaggatgaaggcctttatcatgactcacttccattcaatgaataatacagaagcttctgagaggtaactgacccaaagttacaaagccaattaaagtggtaaaaattggaccctactcag</dnaseq>| | sequence = <dnaseq>AAGCTTTTTGCTGGATTACAAAGTCTTCTCTGGTCGTGGCCACGGTCTGTCTACCCCACTCAGCGCCCGCCCTGTGTCCACACATGCTTGTCAGACTGGACTGAGGAAGCCCACAACTGGGCCTCTCAGTTTCCGGGTCCAATCTAAGCTACCAGACCAGCTCTGCCAAACCAGAGGCCCAGATGGGATCTGCCACTCCAGCCACTGTGAGCAGCTTTGGTTTCAGCCCAAATGCCAGGACTCGAGAAGTGTCGACAAGGTTGAGgttccgggatacatgtgcagaacatgcaggtttgttacataggtaaacatgtgccatggtggtttgctgtacctatcaacccattatgtcctccacttcttccaccttggctacccctgagatagcaagaccaatccttcctcttcttcctccttctcagtctacacaacaagaagacgacaaggatgaaggcctttatcatgactcacttccattcaatgaataatacagaagcttctgagaggtaactgacccaaagttacaaagccaattaaagtggtaaaaattggaccctactcag</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG019598]] |
Revision as of 07:11, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT142830 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
566 nt |
| Genomic location |
chr16+:58329093..58421274 |
| Exon number |
5 |
| Exons |
58329093..58329213,58329295..58329438,58363767..58363853,58420525..58420662,58421199..58421274 |
| Genome context |
|
| Sequence |
000001 AAGCTTTTTG CTGGATTACA AAGTCTTCTC TGGTCGTGGC CACGGTCTGT CTACCCCACT CAGCGCCCGC CCTGTGTCCA 000080
000081 CACATGCTTG TCAGACTGGA CTGAGGAAGC CCACAACTGG GCCTCTCAGT TTCCGGGTCC AATCTAAGCT ACCAGACCAG 000160 000161 CTCTGCCAAA CCAGAGGCCC AGATGGGATC TGCCACTCCA GCCACTGTGA GCAGCTTTGG TTTCAGCCCA AATGCCAGGA 000240 000241 CTCGAGAAGT GTCGACAAGG TTGAGgttcc gggatacatg tgcagaacat gcaggtttgt tacataggta aacatgtgcc 000320 000321 atggtggttt gctgtaccta tcaacccatt atgtcctcca cttcttccac cttggctacc cctgagatag caagaccaat 000400 000401 ccttcctctt cttcctcctt ctcagtctac acaacaagaa gacgacaagg atgaaggcct ttatcatgac tcacttccat 000480 000481 tcaatgaata atacagaagc ttctgagagg taactgaccc aaagttacaa agccaattaa agtggtaaaa attggaccct 000560 000561 actcag |
Predicted Small Protein
| Name | NONHSAT142830_smProtein_320:490 |
| Length | 57 |
| Molecular weight | 6195.8901 |
| Aromaticity | 0.0535714285714 |
| Instability index | 92.2482142857 |
| Isoelectric point | 4.19586181641 |
| Runs | 9 |
| Runs residual | 0.00741608118657 |
| Runs probability | 0.0298631965298 |
| Amino acid sequence | MVVCCTYQPIMSSTSSTLATPEIARPILPLLPPSQSTQQEDDKDEGLYHDSLPFNE |
| Secondary structure | LEEEELLLLEELLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLL |
| PRMN | - |
| PiMo | - |
