Difference between revisions of "NONHSAT100032"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GTTTCATGGAAGACACTTTTTCCACGGACAAGTGTGGGGATGGTGGGGATGGTTTGGAGATGAAACGGTTCCAGCTCAGATGAGCAGCATTAGATTCTCATAAGCGGCGCATAACCTAGATCCTTCGCATGCGCAGTTCACAACAGGGTTCCACTCCTATGAGAATCTAATGCCACCACTGATCTGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGTTGTGACTGGAGGTGGAGCTCACACAGTTAATGCTTGGAGAGGAGGCGGAGCTCACACAGTAATGCTGTGACAGGAGGCAGAGCTCACACAGTAATGATATGACAGGAGGCGGCGCTCACACAGTAATGCTCTGGTGGGAGGCAGAGCTCAGAGAGTAATGCTCTGGCAGGAGGCGGAGCCCACAGAGTAATGCTCTGGCAGGGGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCTGGCAGGGGGCGGAGCCCACAGAGTAATGCTCTGGCAGGGGGTGGAGCTAACAGAGTAATGCTCTGGCAGGGGGTGGAGCTCACCCAGTAATGCTCTGGCAGGGGTTGGAGTTCACACAGTAATGCTCTGGCAGGAGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCTGGCAGGGGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCCGGCAGGAGGCGGAGCCCACAGAGTAATGCTCTTGCAGGGGGCGGAGCTCAGAGTAATGCTCTGGCAGGGGCGGAGCTCAGAGAGTAATGCTCTGGCAGGGGTTGGAATTCACACAGTAATGCTCTGGCAGGGGGTGGAGCTCACCCAGTAATGCTCTGGCAGGGGTTGGAGCTCACAAGGTAATGCTCTGGCATGGGCGGAGCTCACACAGTAATGCTCTGACGGGAGGCGGAGCTCACACAGTAATGCTCTGGCGGGAGGCGGAGCTCACACAGTAATGCTCTGGCAGGGGGCGGAGCACACACAGTAATGCTCTGACAGGGCGGAGCTCACACAGTAATGCTCTGCAGGGGGCAGAGCTCACAGAGTAATGCTCTGGCAGGGGGTGGAGTTCACACAGTAGCTCACCGGCCCACTGCTCACCTCCTACTGTGCGGCCTGGCTCCTAACAGGCCATGGACTGGTAACAATCTGTGGCCTGGGGATTGGGGACCCCTGATTTGAATAATCGAGGACACACTCACCTAGTAAACCATCTGCCAAGAAAAAGGAGGAAATGTTCGTTTTCTCCATTTGCTCTCAGGCACCAACATTAATTTGAACTTAGAAATAAACTACAACAAAGCCAGGCATGGTGGTTCACACCTATAATTCCAGCACTTTGGGAGGCCAAGGAGGGAGGATCACTTGAGCCCAGGAGTCTGAGACCAGCTTAGGCAACACAGTGAGACCCTGTCCCTACAATTACAAAATAAACTAGCTGGGCGTGGTGGTGCACACCTGTAGCCCCAACTACTCAGAAGGCTGAGTTGGGAAGATCACCTGAGCTGCCCAGGAGTCTGAGGCTGCAGTGAGCTGAGATTGTACCACTGCACCA</dnaseq>| | sequence = <dnaseq>GTTTCATGGAAGACACTTTTTCCACGGACAAGTGTGGGGATGGTGGGGATGGTTTGGAGATGAAACGGTTCCAGCTCAGATGAGCAGCATTAGATTCTCATAAGCGGCGCATAACCTAGATCCTTCGCATGCGCAGTTCACAACAGGGTTCCACTCCTATGAGAATCTAATGCCACCACTGATCTGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGTTGTGACTGGAGGTGGAGCTCACACAGTTAATGCTTGGAGAGGAGGCGGAGCTCACACAGTAATGCTGTGACAGGAGGCAGAGCTCACACAGTAATGATATGACAGGAGGCGGCGCTCACACAGTAATGCTCTGGTGGGAGGCAGAGCTCAGAGAGTAATGCTCTGGCAGGAGGCGGAGCCCACAGAGTAATGCTCTGGCAGGGGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCTGGCAGGGGGCGGAGCCCACAGAGTAATGCTCTGGCAGGGGGTGGAGCTAACAGAGTAATGCTCTGGCAGGGGGTGGAGCTCACCCAGTAATGCTCTGGCAGGGGTTGGAGTTCACACAGTAATGCTCTGGCAGGAGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCTGGCAGGGGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCCGGCAGGAGGCGGAGCCCACAGAGTAATGCTCTTGCAGGGGGCGGAGCTCAGAGTAATGCTCTGGCAGGGGCGGAGCTCAGAGAGTAATGCTCTGGCAGGGGTTGGAATTCACACAGTAATGCTCTGGCAGGGGGTGGAGCTCACCCAGTAATGCTCTGGCAGGGGTTGGAGCTCACAAGGTAATGCTCTGGCATGGGCGGAGCTCACACAGTAATGCTCTGACGGGAGGCGGAGCTCACACAGTAATGCTCTGGCGGGAGGCGGAGCTCACACAGTAATGCTCTGGCAGGGGGCGGAGCACACACAGTAATGCTCTGACAGGGCGGAGCTCACACAGTAATGCTCTGCAGGGGGCAGAGCTCACAGAGTAATGCTCTGGCAGGGGGTGGAGTTCACACAGTAGCTCACCGGCCCACTGCTCACCTCCTACTGTGCGGCCTGGCTCCTAACAGGCCATGGACTGGTAACAATCTGTGGCCTGGGGATTGGGGACCCCTGATTTGAATAATCGAGGACACACTCACCTAGTAAACCATCTGCCAAGAAAAAGGAGGAAATGTTCGTTTTCTCCATTTGCTCTCAGGCACCAACATTAATTTGAACTTAGAAATAAACTACAACAAAGCCAGGCATGGTGGTTCACACCTATAATTCCAGCACTTTGGGAGGCCAAGGAGGGAGGATCACTTGAGCCCAGGAGTCTGAGACCAGCTTAGGCAACACAGTGAGACCCTGTCCCTACAATTACAAAATAAACTAGCTGGGCGTGGTGGTGCACACCTGTAGCCCCAACTACTCAGAAGGCTGAGTTGGGAAGATCACCTGAGCTGCCCAGGAGTCTGAGGCTGCAGTGAGCTGAGATTGTACCACTGCACCA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG039677]] |
Revision as of 07:15, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT100032 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1697 nt |
Genomic location |
chr5+:1569635..1571902 |
Exon number |
2 |
Exons |
1569635..1570008,1570425..1571902 |
Genome context |
|
Sequence |
000001 GTTTCATGGA AGACACTTTT TCCACGGACA AGTGTGGGGA TGGTGGGGAT GGTTTGGAGA TGAAACGGTT CCAGCTCAGA 000080
000081 TGAGCAGCAT TAGATTCTCA TAAGCGGCGC ATAACCTAGA TCCTTCGCAT GCGCAGTTCA CAACAGGGTT CCACTCCTAT 000160 000161 GAGAATCTAA TGCCACCACT GATCTGACAG GAGGCGGAGC TCACACAGTA ATGCTTGGAC AGGAGGCGGA GCTCACACAG 000240 000241 TAATGCTTGG ACAGGAGGCG GAGCTCACAC AGTAATGCTT GGACAGGAGG CGGAGCTCAC ACAGTAATGT TGTGACTGGA 000320 000321 GGTGGAGCTC ACACAGTTAA TGCTTGGAGA GGAGGCGGAG CTCACACAGT AATGCTGTGA CAGGAGGCAG AGCTCACACA 000400 000401 GTAATGATAT GACAGGAGGC GGCGCTCACA CAGTAATGCT CTGGTGGGAG GCAGAGCTCA GAGAGTAATG CTCTGGCAGG 000480 000481 AGGCGGAGCC CACAGAGTAA TGCTCTGGCA GGGGGCGGAG CTCACAGTAA TGCTGTGACT GGAGGCGGAG CTCACAGAGT 000560 000561 AATGCTCTGG CAGGGGGCGG AGCCCACAGA GTAATGCTCT GGCAGGGGGT GGAGCTAACA GAGTAATGCT CTGGCAGGGG 000640 000641 GTGGAGCTCA CCCAGTAATG CTCTGGCAGG GGTTGGAGTT CACACAGTAA TGCTCTGGCA GGAGGCGGAG CTCACAGTAA 000720 000721 TGCTGTGACT GGAGGCGGAG CTCACAGAGT AATGCTCTGG CAGGGGGCGG AGCTCACAGT AATGCTGTGA CTGGAGGCGG 000800 000801 AGCTCACAGA GTAATGCTCC GGCAGGAGGC GGAGCCCACA GAGTAATGCT CTTGCAGGGG GCGGAGCTCA GAGTAATGCT 000880 000881 CTGGCAGGGG CGGAGCTCAG AGAGTAATGC TCTGGCAGGG GTTGGAATTC ACACAGTAAT GCTCTGGCAG GGGGTGGAGC 000960 000961 TCACCCAGTA ATGCTCTGGC AGGGGTTGGA GCTCACAAGG TAATGCTCTG GCATGGGCGG AGCTCACACA GTAATGCTCT 001040 001041 GACGGGAGGC GGAGCTCACA CAGTAATGCT CTGGCGGGAG GCGGAGCTCA CACAGTAATG CTCTGGCAGG GGGCGGAGCA 001120 001121 CACACAGTAA TGCTCTGACA GGGCGGAGCT CACACAGTAA TGCTCTGCAG GGGGCAGAGC TCACAGAGTA ATGCTCTGGC 001200 001201 AGGGGGTGGA GTTCACACAG TAGCTCACCG GCCCACTGCT CACCTCCTAC TGTGCGGCCT GGCTCCTAAC AGGCCATGGA 001280 001281 CTGGTAACAA TCTGTGGCCT GGGGATTGGG GACCCCTGAT TTGAATAATC GAGGACACAC TCACCTAGTA AACCATCTGC 001360 001361 CAAGAAAAAG GAGGAAATGT TCGTTTTCTC CATTTGCTCT CAGGCACCAA CATTAATTTG AACTTAGAAA TAAACTACAA 001440 001441 CAAAGCCAGG CATGGTGGTT CACACCTATA ATTCCAGCAC TTTGGGAGGC CAAGGAGGGA GGATCACTTG AGCCCAGGAG 001520 001521 TCTGAGACCA GCTTAGGCAA CACAGTGAGA CCCTGTCCCT ACAATTACAA AATAAACTAG CTGGGCGTGG TGGTGCACAC 001600 001601 CTGTAGCCCC AACTACTCAG AAGGCTGAGT TGGGAAGATC ACCTGAGCTG CCCAGGAGTC TGAGGCTGCA GTGAGCTGAG 001680 001681 ATTGTACCAC TGCACCA |
Predicted Small Protein
Name | NONHSAT100032_smProtein_845:970 |
Length | 42 |
Molecular weight | 4511.2099 |
Aromaticity | 0.0487804878049 |
Instability index | 51.8853658537 |
Isoelectric point | 5.47821044922 |
Runs | 9 |
Runs residual | 0.0435433188688 |
Runs probability | 0.0468213311351 |
Amino acid sequence | MLLQGAELRVMLWQGRSSESNALAGVGIHTVMLWQGVELTQ |
Secondary structure | LLLLHHHHHHHHHLLLLLHHHHHHLLLEEEEEEEELEEELL |
PRMN | - |
PiMo | - |