Difference between revisions of "ENST00000415237.1"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>GAATTATGCTTGAAGAAGGTTAATCTTATAATGGCATGCAGAGCGGAGCTGGGCAAGGCCAGAGGCTAAATATGGAGCCAGAAAGATACTGCAGAAAGTGAGCAAAAAGGATGAGTGGATGGCCTGGGGTGGAATCCGTGAAAAAGGGCAGATTGTCAGTCTCAGGAAATCAACAGGACTGAGTTCTAACTTCAGCTGGGCTACTATGCCCTGGGGAATCAGAAGATTCTCCCTAACATTGGAGTCCAAAGAAGAGGAGCCACCATCTCCTTAACTACAAAACAACTGAGAGAAGAAATGTCTCCCTTTAGTGCCAGTGAAGAGTTTTGCTTCTCTAGAACAACTGTTTATTTTTGATCTTATGAAACGCGTGACACTTGTAACTGATTTGCCTTCTTTTTGCTTGCTGCTAGAAATCTCAGAACCAAATTCGAGGTCATTTCTGAATGTGCTGGACTACACAGCATGAATTCTGTGTCCTCTCACCTCATTCATAGATACATTTTTTTATTCCTACCCATCTTTTCCTTTCCCCAGATTTTCCTATTGCTCTTTTATCATCTTGAGTAAAGAAGGTTAAACTATGAATAAAAAGTACAATCTCAATGACGAGTCAGGGAAAAGTAAGTTTTGGACTTCCATTTAGAGCCATTTATAGGTCAGCAATCTTTTGTCTCTGTGTCTTCTTTCTGCCCTGAACAACCAAGGCATCCTAGTCAGTCTCTCTTCATCTGCATACCACTTTAAAGAGCCCAGGGGTCTTCCAAGTACAGTCACTACTAAGAAAATGTCTTCAGTAAATTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAATGTAGTGGCACGATCTCAGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATCCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCACCTGCCACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTATTAGCCAGGATGGTCTTAATCTCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCCCCGCGCCCAGCCTTCAGTAAAATTTTAATGCATGTTGCTTATCATTCTTTGTATTGTAAGCACCAATCCTTAATCTGTGCTGTGGTTTTTGTTCAGAAACATTTCTTTAAAAAAATTTCCCCAGACGCTCAGCCTTCATATTCTAATCTTTATTATTCTGAACTACCTACAAAGCTAAATATACCTTGTCTACATGCAGTGCTTATGTAACAATGGTGCTTATTTTGTTTTACATTGCTTCAACCTCTGACCAGAAACTTAGAGGACAGAATGCCCTGCTTTTACAAAAAATGTGGTGACCACAACGGTAACCTTATCTAATTGAGACCATTTTAGGAAGGAGGGGAGGAGATATTTTTACTGCAAAGACTGAGTCATAAGCCTTCATTTTTTACCCTGGGTTGTGCAGAAACTTTAAACTTTCTATATTATTTCATTTCTTCCATACCAGGACATTTATTTCCTATTCAGTGACAATCTTGATGTCTTCATCCTTCAAACTGCTCTCTAACATAGTTTCAAAATCCAAGCATTAAACATTATTAATGCTCAGGGGATGAATATGTTCATTACCTTTACTGTAGTGATGATTTCCTATGGCAAAATGTTAAATGATGTAAAGATAAAAATAATTATCATAGTTATTAATCATAGCAATAAAACTGGACTACCTAAAGCACA</dnaseq>|
 
sequence = <dnaseq>GAATTATGCTTGAAGAAGGTTAATCTTATAATGGCATGCAGAGCGGAGCTGGGCAAGGCCAGAGGCTAAATATGGAGCCAGAAAGATACTGCAGAAAGTGAGCAAAAAGGATGAGTGGATGGCCTGGGGTGGAATCCGTGAAAAAGGGCAGATTGTCAGTCTCAGGAAATCAACAGGACTGAGTTCTAACTTCAGCTGGGCTACTATGCCCTGGGGAATCAGAAGATTCTCCCTAACATTGGAGTCCAAAGAAGAGGAGCCACCATCTCCTTAACTACAAAACAACTGAGAGAAGAAATGTCTCCCTTTAGTGCCAGTGAAGAGTTTTGCTTCTCTAGAACAACTGTTTATTTTTGATCTTATGAAACGCGTGACACTTGTAACTGATTTGCCTTCTTTTTGCTTGCTGCTAGAAATCTCAGAACCAAATTCGAGGTCATTTCTGAATGTGCTGGACTACACAGCATGAATTCTGTGTCCTCTCACCTCATTCATAGATACATTTTTTTATTCCTACCCATCTTTTCCTTTCCCCAGATTTTCCTATTGCTCTTTTATCATCTTGAGTAAAGAAGGTTAAACTATGAATAAAAAGTACAATCTCAATGACGAGTCAGGGAAAAGTAAGTTTTGGACTTCCATTTAGAGCCATTTATAGGTCAGCAATCTTTTGTCTCTGTGTCTTCTTTCTGCCCTGAACAACCAAGGCATCCTAGTCAGTCTCTCTTCATCTGCATACCACTTTAAAGAGCCCAGGGGTCTTCCAAGTACAGTCACTACTAAGAAAATGTCTTCAGTAAATTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAATGTAGTGGCACGATCTCAGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATCCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCACCTGCCACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTATTAGCCAGGATGGTCTTAATCTCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCCCCGCGCCCAGCCTTCAGTAAAATTTTAATGCATGTTGCTTATCATTCTTTGTATTGTAAGCACCAATCCTTAATCTGTGCTGTGGTTTTTGTTCAGAAACATTTCTTTAAAAAAATTTCCCCAGACGCTCAGCCTTCATATTCTAATCTTTATTATTCTGAACTACCTACAAAGCTAAATATACCTTGTCTACATGCAGTGCTTATGTAACAATGGTGCTTATTTTGTTTTACATTGCTTCAACCTCTGACCAGAAACTTAGAGGACAGAATGCCCTGCTTTTACAAAAAATGTGGTGACCACAACGGTAACCTTATCTAATTGAGACCATTTTAGGAAGGAGGGGAGGAGATATTTTTACTGCAAAGACTGAGTCATAAGCCTTCATTTTTTACCCTGGGTTGTGCAGAAACTTTAAACTTTCTATATTATTTCATTTCTTCCATACCAGGACATTTATTTCCTATTCAGTGACAATCTTGATGTCTTCATCCTTCAAACTGCTCTCTAACATAGTTTCAAAATCCAAGCATTAAACATTATTAATGCTCAGGGGATGAATATGTTCATTACCTTTACTGTAGTGATGATTTCCTATGGCAAAATGTTAAATGATGTAAAGATAAAAATAATTATCATAGTTATTAATCATAGCAATAAAACTGGACTACCTAAAGCACA</dnaseq>|
 
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[[Category:Intronic(AS)]]
+
[[Category:Intronic(AS)]][[Category:lnc-C7orf11-3]]

Revision as of 07:32, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000415237.1

Source

Gencode19

Same with

lnc-C7orf11-3:1,NONHSAT120251

Classification

intronic(AS)

Length

1771 nt

Genomic location

chr7-:40577726..40586527

Exon number

2

Exons

40577726..40579281,40586313..40586527

Genome context

Sequence
000001 GAATTATGCT TGAAGAAGGT TAATCTTATA ATGGCATGCA GAGCGGAGCT GGGCAAGGCC AGAGGCTAAA TATGGAGCCA 000080
000081 GAAAGATACT GCAGAAAGTG AGCAAAAAGG ATGAGTGGAT GGCCTGGGGT GGAATCCGTG AAAAAGGGCA GATTGTCAGT 000160
000161 CTCAGGAAAT CAACAGGACT GAGTTCTAAC TTCAGCTGGG CTACTATGCC CTGGGGAATC AGAAGATTCT CCCTAACATT 000240
000241 GGAGTCCAAA GAAGAGGAGC CACCATCTCC TTAACTACAA AACAACTGAG AGAAGAAATG TCTCCCTTTA GTGCCAGTGA 000320
000321 AGAGTTTTGC TTCTCTAGAA CAACTGTTTA TTTTTGATCT TATGAAACGC GTGACACTTG TAACTGATTT GCCTTCTTTT 000400
000401 TGCTTGCTGC TAGAAATCTC AGAACCAAAT TCGAGGTCAT TTCTGAATGT GCTGGACTAC ACAGCATGAA TTCTGTGTCC 000480
000481 TCTCACCTCA TTCATAGATA CATTTTTTTA TTCCTACCCA TCTTTTCCTT TCCCCAGATT TTCCTATTGC TCTTTTATCA 000560
000561 TCTTGAGTAA AGAAGGTTAA ACTATGAATA AAAAGTACAA TCTCAATGAC GAGTCAGGGA AAAGTAAGTT TTGGACTTCC 000640
000641 ATTTAGAGCC ATTTATAGGT CAGCAATCTT TTGTCTCTGT GTCTTCTTTC TGCCCTGAAC AACCAAGGCA TCCTAGTCAG 000720
000721 TCTCTCTTCA TCTGCATACC ACTTTAAAGA GCCCAGGGGT CTTCCAAGTA CAGTCACTAC TAAGAAAATG TCTTCAGTAA 000800
000801 ATTTTTTTTT TTTTTTTTTG AGATGGAGTC TCGCTCTGTC GCCCAGGCTG GAATGTAGTG GCACGATCTC AGCTCACTGC 000880
000881 AAGCTCTGCC TCCCGGGTTC ACGCCATCCT CCTGCCTCAG CCTCCCAAGT AGCTGAGACT ACAGGCACCT GCCACCATGC 000960
000961 CCGGCTAATT TTTTTTGTAT TTTTAGTAGA GACGGGGTTT CACTGTATTA GCCAGGATGG TCTTAATCTC CTGACCTCAT 001040
001041 GATCCGCCCG CCTCGGCCTC CCAAAGTGCT GGGATTACAG GCGTGAGCCC CCGCGCCCAG CCTTCAGTAA AATTTTAATG 001120
001121 CATGTTGCTT ATCATTCTTT GTATTGTAAG CACCAATCCT TAATCTGTGC TGTGGTTTTT GTTCAGAAAC ATTTCTTTAA 001200
001201 AAAAATTTCC CCAGACGCTC AGCCTTCATA TTCTAATCTT TATTATTCTG AACTACCTAC AAAGCTAAAT ATACCTTGTC 001280
001281 TACATGCAGT GCTTATGTAA CAATGGTGCT TATTTTGTTT TACATTGCTT CAACCTCTGA CCAGAAACTT AGAGGACAGA 001360
001361 ATGCCCTGCT TTTACAAAAA ATGTGGTGAC CACAACGGTA ACCTTATCTA ATTGAGACCA TTTTAGGAAG GAGGGGAGGA 001440
001441 GATATTTTTA CTGCAAAGAC TGAGTCATAA GCCTTCATTT TTTACCCTGG GTTGTGCAGA AACTTTAAAC TTTCTATATT 001520
001521 ATTTCATTTC TTCCATACCA GGACATTTAT TTCCTATTCA GTGACAATCT TGATGTCTTC ATCCTTCAAA CTGCTCTCTA 001600
001601 ACATAGTTTC AAAATCCAAG CATTAAACAT TATTAATGCT CAGGGGATGA ATATGTTCAT TACCTTTACT GTAGTGATGA 001680
001681 TTTCCTATGG CAAAATGTTA AATGATGTAA AGATAAAAAT AATTATCATA GTTATTAATC ATAGCAATAA AACTGGACTA 001760
001761 CCTAAAGCAC A
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Predicted Small Protein

Name ENST00000415237.1_smProtein_605:697
Length 31
Molecular weight 3400.0868
Aromaticity 0.2
Instability index 41.6433333333
Isoelectric point 9.49810791016
Runs 6
Runs residual 0.00225225225225
Runs probability 0.041423776718
Amino acid sequence MTSQGKVSFGLPFRAIYRSAIFCLCVFFLP
Secondary structure LLLLLEEELLLLHHHHHHHHHHEEEEEELL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
PiMo i?????????????????????????????