Difference between revisions of "NONHSAT144009"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>tgacaTGTTCAGATGTTGGCAAGGCTGAAAACTGCAGGGGATCTGGTTGTGATAATCCAGGCCTGAATATATACAAATATGAACAAGACCCACAAGGACTGCTCATCACCCCAGTATTCCATTTACAACATCCTGAATGAACTCCCGACCAGGCCTATAATTCTCTCTTGCAGCCAAATATCCTGCTTACTCCTGGTATCTACCTGGTCAGCAGACCTCATGAGTTATCGCCCAGTGACAAAACCATCCCAAAGATGCACCAGTCCAGCACAAAGTATGACTGTCAATCTCACAAAAGATGTAGGGTTCTACgaggatactcagagtataagaattacgctaagtgaaataagccaagcccagaaagacacatactttattatttcatgtatctgtggaatctaaaagagtcaaattcatggcagcagggagagggctgaagaagggggagatgttgatcaaagTTTCTAtgtatacaaagaccaaaccatcacattatgcctcataaatatatacaattattatttgctaattacaagtaaaGCAATACAAGAAGAAAAAAAGGAATCATAAGTAAATCCATGACAAGTGAAAACGCAATGGAGAGAAGGGAATCAATGATTGAAGAAGAGAAAGGACAGTGGATTTACAACTGCTTCGAAAGAGTGATTTGACTGGCAAAGGACTGGGGAGAGGTCCTTTGGGAAATGGACAAAGCCCTCGAATGGTTAGGAAAGACAATCTCTTTATAAATGCAGGGCATAAGCTGAGCACAAGGTGAAGTTTGGCATGTACTGCCGTGGGATGTTGTAAAAATTATGTCAAAAGCAAAGCAATTCTTGGTTCATCTGTGTTCACTGTGAGACTAGCCTATTATTGGGGTTAAACTTATAAACAAACTTCTATTCATCATTTTTTTCTCCAAAATaaagtgatcaaattgtcc</dnaseq>| | sequence = <dnaseq>tgacaTGTTCAGATGTTGGCAAGGCTGAAAACTGCAGGGGATCTGGTTGTGATAATCCAGGCCTGAATATATACAAATATGAACAAGACCCACAAGGACTGCTCATCACCCCAGTATTCCATTTACAACATCCTGAATGAACTCCCGACCAGGCCTATAATTCTCTCTTGCAGCCAAATATCCTGCTTACTCCTGGTATCTACCTGGTCAGCAGACCTCATGAGTTATCGCCCAGTGACAAAACCATCCCAAAGATGCACCAGTCCAGCACAAAGTATGACTGTCAATCTCACAAAAGATGTAGGGTTCTACgaggatactcagagtataagaattacgctaagtgaaataagccaagcccagaaagacacatactttattatttcatgtatctgtggaatctaaaagagtcaaattcatggcagcagggagagggctgaagaagggggagatgttgatcaaagTTTCTAtgtatacaaagaccaaaccatcacattatgcctcataaatatatacaattattatttgctaattacaagtaaaGCAATACAAGAAGAAAAAAAGGAATCATAAGTAAATCCATGACAAGTGAAAACGCAATGGAGAGAAGGGAATCAATGATTGAAGAAGAGAAAGGACAGTGGATTTACAACTGCTTCGAAAGAGTGATTTGACTGGCAAAGGACTGGGGAGAGGTCCTTTGGGAAATGGACAAAGCCCTCGAATGGTTAGGAAAGACAATCTCTTTATAAATGCAGGGCATAAGCTGAGCACAAGGTGAAGTTTGGCATGTACTGCCGTGGGATGTTGTAAAAATTATGTCAAAAGCAAAGCAATTCTTGGTTCATCTGTGTTCACTGTGAGACTAGCCTATTATTGGGGTTAAACTTATAAACAAACTTCTATTCATCATTTTTTTCTCCAAAATaaagtgatcaaattgtcc</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG020129]] |
Revision as of 07:41, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144009 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
946 nt |
Genomic location |
chr16-:83768638..83806473 |
Exon number |
2 |
Exons |
83768638..83769523,83806414..83806473 |
Genome context |
|
Sequence |
000001 tgacaTGTTC AGATGTTGGC AAGGCTGAAA ACTGCAGGGG ATCTGGTTGT GATAATCCAG GCCTGAATAT ATACAAATAT 000080
000081 GAACAAGACC CACAAGGACT GCTCATCACC CCAGTATTCC ATTTACAACA TCCTGAATGA ACTCCCGACC AGGCCTATAA 000160 000161 TTCTCTCTTG CAGCCAAATA TCCTGCTTAC TCCTGGTATC TACCTGGTCA GCAGACCTCA TGAGTTATCG CCCAGTGACA 000240 000241 AAACCATCCC AAAGATGCAC CAGTCCAGCA CAAAGTATGA CTGTCAATCT CACAAAAGAT GTAGGGTTCT ACgaggatac 000320 000321 tcagagtata agaattacgc taagtgaaat aagccaagcc cagaaagaca catactttat tatttcatgt atctgtggaa 000400 000401 tctaaaagag tcaaattcat ggcagcaggg agagggctga agaaggggga gatgttgatc aaagTTTCTA tgtatacaaa 000480 000481 gaccaaacca tcacattatg cctcataaat atatacaatt attatttgct aattacaagt aaaGCAATAC AAGAAGAAAA 000560 000561 AAAGGAATCA TAAGTAAATC CATGACAAGT GAAAACGCAA TGGAGAGAAG GGAATCAATG ATTGAAGAAG AGAAAGGACA 000640 000641 GTGGATTTAC AACTGCTTCG AAAGAGTGAT TTGACTGGCA AAGGACTGGG GAGAGGTCCT TTGGGAAATG GACAAAGCCC 000720 000721 TCGAATGGTT AGGAAAGACA ATCTCTTTAT AAATGCAGGG CATAAGCTGA GCACAAGGTG AAGTTTGGCA TGTACTGCCG 000800 000801 TGGGATGTTG TAAAAATTAT GTCAAAAGCA AAGCAATTCT TGGTTCATCT GTGTTCACTG TGAGACTAGC CTATTATTGG 000880 000881 GGTTAAACTT ATAAACAAAC TTCTATTCAT CATTTTTTTC TCCAAAATaa agtgatcaaa ttgtcc |
Predicted Small Protein
Name | NONHSAT144009_smProtein_254:346 |
Length | 31 |
Molecular weight | 3668.1081 |
Aromaticity | 0.133333333333 |
Instability index | 103.686666667 |
Isoelectric point | 9.62518310547 |
Runs | 5 |
Runs residual | 0.0355855855856 |
Runs probability | 0.0171347818407 |
Amino acid sequence | MHQSSTKYDCQSHKRCRVLRGYSEYKNYAK |
Secondary structure | LLLLLLLLLLLLLLLLEEEELHHHHHHLLL |
PRMN | - |
PiMo | - |