Difference between revisions of "NONHSAT078943"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>AATGAAGGATAGTTAGATGTAGAAGGTAAAACAAAAGGAATCAGCTTTTTGTGTCTGTGACAGAGGATCTGATACTTGATGGTCTGACCACAAGGCATCGCTCAGAAATCAGCAGTCCTTTTCACCCAGTGAACAGCCAGCTGCTTTGAGCAGAGAGAGCTGTGGTTGGAACTCCTGCTCTGTGACTCAGGGGAGGAGGCAGAGCTTGCCGCAGAATGCAGCCACTGCCCACAGCCCCTGTGCACTCCCTTTTCCCTTGTGCTGGCTTCCCGCTGCCAGCATCTGCAAGTCTCTGCCTGGAGGTGAGCAGGAGGGTGCTGGGCCCATTAGACAGGTGGCTAGGGCTGGGGAGTTCATGGTCTTCACGCAGTTTCAGGTGGAGGTTGCAggatatatggcccagcttcctggccccaggtggaacaaccctgagacatgttcgccatttcccacaggcccccagtgggactgagccctagttgtcttcagtggcaatcttctcattaccacctctcgtgttgattctttttcccttcactttctcatttttccatttccttgttggtccccattaactacttgcacatgaatctttgtctcagggtctgcatctgggggaccccaaaGACACAGACACTTGAGCTGTTACTCTGCCTTTATCTTAGACCTAGCATTGGTCTCCAGAGGTCACTCATGACTTCAGGGCCTATTTTAATGGCCTCTTTCCCCATGTGTTCCTTGGGAATGTCCATTGTTGATGCGTCCTTCTGTACTAAGTAGAGTTTTTGGGCTGCAAGGAGGCAGTTAGCACAGGGAACTACGTAGTGAGGGACATGGAGACTAAACAGCAGCTGGCCCATCTCTCTGGCTTCTCATGGCCAAGCCTGGGACACACAGCTGCCCTCGTGCAGGTCCAGAACTATGGCACTTGTTCCCTCAGGACCCATCCTCAAAGCCAGTGACTTGGTCTTTTCCTATGACAAAGGAGCTCCCAGAATGTGGCAGTCCCCCTTCCTAGAGGGAGAATCTGACTGGGTCAGGGAGGCACCCCCGGTTTGCAGAGCCCCCATTGGTCAGGTTCAGTGTCCAAAACACCTGAGGGGCAAGTGGCTTCTCGAAGTCCAGCCCATATGGTTACTTTTGACTTGGACACTCAAGGCACAGGGACACATGACACAGGCACAGGGTGTGACAACTGCATGCAGAAAGAGCCACTCTCATTCCTCAGAAGAGGCTGTGGAGATGAGTggctgagccatgtgccccaaaattcatgttgaagtcctaacccccagtatcttaaaatgtgaccatatttagaaatagaacctttaaagagctaactgggttaaaatgaattcattagggtaggccctacttcagtatgaccggtgtctttagcagaagaagaaatcggtacagacacgcagaggggagggcatgtgaggacatgggaaggaaatgccacttgcaagccaaggagagaggcctcagaagaaaccagccctcctgacaccttgatcctagacttccagcctccagaactgtaagaaaatacatttctgttgtttaagccacctggtcttagagttctatCTTGAATTTCTCTCTGCTTCAGACTTTTCTGTTTTGTTTTTTAGCCTAAATGCTATTGAAAAGAGCAGAGAAGATAGAGTGCAGGCCCCTAGAGACAGGATGGAACGAAACACGCAGTGTGCATCTGTGTCCTGCTCAGCATACGCTCTTGGTCCCCACTGGGCCATCTCGCTGCTGACTGGCATCCCGAAGAACAGGCAGATTGCACAGGGGCAGCTCTTTCCTCCAAAGCTGCAATGTGGTGCATGAAGTCCTCAGATTTGGGAACTCATACAGGCACTTGAGCTCAAACATACAGTTCTGATCTAAGACATCACAGGGTCATGGTGGAGCTGTTTCAGCTGCAGGTGGTATTCCACCATTTGGTCCTCCCTGATGTCTCCTGGCACCTTTCCTTCTTCAGTCTCAGCACTCTGAAGAAGCGTGCTTGTGAGCGCCGCGGGACGATCCAGGATGTCCAGGATTGTGGACGATCCTGTTCTTCCCATCTGTGAGGTAAGGCAGATTAGGAATGTCCACGTCTAGCTTGAATTTCACATCCAGCCATTGGCTGCCACCATGGCCAGGGGCTTCTGCAGATGGATCACCGTTTCCCTCCCAGGAGCAGGCAGGTGTCCAGTATCAGCCCCAGAACATCCCGGTCACCCATCTCCATAGGGCTTGGATGACATGATGATGCTCTCTGTGCCTCTGAGGACGGCGCCTTGGGTCTTTGTACACTAAATCCCACCTTGTCCTCTCCTCTATTTGAAACAGCCATTTCCCAAATCCCAATCTGATGAAATCCTGTTCTTCCTTCCCTCATGTTTCTCTAGGCCTCCTGTGGACTCCCAGAATGTAAAGTCAGCATTCCCTTGAGCCTTTTGGGGACTTATAAGCACATGGCCCAAGGTCCACCTAACTCTAGGTGTATCCTGTAGAACCAGTATTCTAATCCTAACTTTAAAGATCTTACAGGACCATAGGGTGTGCGTAAAAAGCCTGCTGCAAATCAGAGTGCTTCAACTGCGTATTAATGAGATGGAGGAAAGAGGCTGTGAGTGCAGACAATGAGTCCCTGAGTAAATAGACTCCAGAGCCAAAGGTGTTCTCCACACCGAAAGAATGACTGTACCCAGGGAAGGAGCTCAGACTCACCTGGACAAACCCTGAGGGGACAGCCATGTTCCAGTGTGGCTAGGAGGGTCTGGAGCTGGGCACGTCCCCCATGTCTGCTTGATTCCCCTCTGGCCGAGTTCTACTCAGGTGAGTTGTGCTCATTCTTGCTTCCCCAGGGCCTGGATCACAgttcctcaagctttgggatacaaacgaatcacctgggatttggataaaatgcagattcgtgttcagcagccctggcattctgcatttctcatgagctccagggagacgctggtgctgctggggcaggaccacactttgggtggcaaggGCTTGGCAGGCAATTCCAGGTGTCACCCTAGAGATG</dnaseq>|
 
sequence = <dnaseq>AATGAAGGATAGTTAGATGTAGAAGGTAAAACAAAAGGAATCAGCTTTTTGTGTCTGTGACAGAGGATCTGATACTTGATGGTCTGACCACAAGGCATCGCTCAGAAATCAGCAGTCCTTTTCACCCAGTGAACAGCCAGCTGCTTTGAGCAGAGAGAGCTGTGGTTGGAACTCCTGCTCTGTGACTCAGGGGAGGAGGCAGAGCTTGCCGCAGAATGCAGCCACTGCCCACAGCCCCTGTGCACTCCCTTTTCCCTTGTGCTGGCTTCCCGCTGCCAGCATCTGCAAGTCTCTGCCTGGAGGTGAGCAGGAGGGTGCTGGGCCCATTAGACAGGTGGCTAGGGCTGGGGAGTTCATGGTCTTCACGCAGTTTCAGGTGGAGGTTGCAggatatatggcccagcttcctggccccaggtggaacaaccctgagacatgttcgccatttcccacaggcccccagtgggactgagccctagttgtcttcagtggcaatcttctcattaccacctctcgtgttgattctttttcccttcactttctcatttttccatttccttgttggtccccattaactacttgcacatgaatctttgtctcagggtctgcatctgggggaccccaaaGACACAGACACTTGAGCTGTTACTCTGCCTTTATCTTAGACCTAGCATTGGTCTCCAGAGGTCACTCATGACTTCAGGGCCTATTTTAATGGCCTCTTTCCCCATGTGTTCCTTGGGAATGTCCATTGTTGATGCGTCCTTCTGTACTAAGTAGAGTTTTTGGGCTGCAAGGAGGCAGTTAGCACAGGGAACTACGTAGTGAGGGACATGGAGACTAAACAGCAGCTGGCCCATCTCTCTGGCTTCTCATGGCCAAGCCTGGGACACACAGCTGCCCTCGTGCAGGTCCAGAACTATGGCACTTGTTCCCTCAGGACCCATCCTCAAAGCCAGTGACTTGGTCTTTTCCTATGACAAAGGAGCTCCCAGAATGTGGCAGTCCCCCTTCCTAGAGGGAGAATCTGACTGGGTCAGGGAGGCACCCCCGGTTTGCAGAGCCCCCATTGGTCAGGTTCAGTGTCCAAAACACCTGAGGGGCAAGTGGCTTCTCGAAGTCCAGCCCATATGGTTACTTTTGACTTGGACACTCAAGGCACAGGGACACATGACACAGGCACAGGGTGTGACAACTGCATGCAGAAAGAGCCACTCTCATTCCTCAGAAGAGGCTGTGGAGATGAGTggctgagccatgtgccccaaaattcatgttgaagtcctaacccccagtatcttaaaatgtgaccatatttagaaatagaacctttaaagagctaactgggttaaaatgaattcattagggtaggccctacttcagtatgaccggtgtctttagcagaagaagaaatcggtacagacacgcagaggggagggcatgtgaggacatgggaaggaaatgccacttgcaagccaaggagagaggcctcagaagaaaccagccctcctgacaccttgatcctagacttccagcctccagaactgtaagaaaatacatttctgttgtttaagccacctggtcttagagttctatCTTGAATTTCTCTCTGCTTCAGACTTTTCTGTTTTGTTTTTTAGCCTAAATGCTATTGAAAAGAGCAGAGAAGATAGAGTGCAGGCCCCTAGAGACAGGATGGAACGAAACACGCAGTGTGCATCTGTGTCCTGCTCAGCATACGCTCTTGGTCCCCACTGGGCCATCTCGCTGCTGACTGGCATCCCGAAGAACAGGCAGATTGCACAGGGGCAGCTCTTTCCTCCAAAGCTGCAATGTGGTGCATGAAGTCCTCAGATTTGGGAACTCATACAGGCACTTGAGCTCAAACATACAGTTCTGATCTAAGACATCACAGGGTCATGGTGGAGCTGTTTCAGCTGCAGGTGGTATTCCACCATTTGGTCCTCCCTGATGTCTCCTGGCACCTTTCCTTCTTCAGTCTCAGCACTCTGAAGAAGCGTGCTTGTGAGCGCCGCGGGACGATCCAGGATGTCCAGGATTGTGGACGATCCTGTTCTTCCCATCTGTGAGGTAAGGCAGATTAGGAATGTCCACGTCTAGCTTGAATTTCACATCCAGCCATTGGCTGCCACCATGGCCAGGGGCTTCTGCAGATGGATCACCGTTTCCCTCCCAGGAGCAGGCAGGTGTCCAGTATCAGCCCCAGAACATCCCGGTCACCCATCTCCATAGGGCTTGGATGACATGATGATGCTCTCTGTGCCTCTGAGGACGGCGCCTTGGGTCTTTGTACACTAAATCCCACCTTGTCCTCTCCTCTATTTGAAACAGCCATTTCCCAAATCCCAATCTGATGAAATCCTGTTCTTCCTTCCCTCATGTTTCTCTAGGCCTCCTGTGGACTCCCAGAATGTAAAGTCAGCATTCCCTTGAGCCTTTTGGGGACTTATAAGCACATGGCCCAAGGTCCACCTAACTCTAGGTGTATCCTGTAGAACCAGTATTCTAATCCTAACTTTAAAGATCTTACAGGACCATAGGGTGTGCGTAAAAAGCCTGCTGCAAATCAGAGTGCTTCAACTGCGTATTAATGAGATGGAGGAAAGAGGCTGTGAGTGCAGACAATGAGTCCCTGAGTAAATAGACTCCAGAGCCAAAGGTGTTCTCCACACCGAAAGAATGACTGTACCCAGGGAAGGAGCTCAGACTCACCTGGACAAACCCTGAGGGGACAGCCATGTTCCAGTGTGGCTAGGAGGGTCTGGAGCTGGGCACGTCCCCCATGTCTGCTTGATTCCCCTCTGGCCGAGTTCTACTCAGGTGAGTTGTGCTCATTCTTGCTTCCCCAGGGCCTGGATCACAgttcctcaagctttgggatacaaacgaatcacctgggatttggataaaatgcagattcgtgttcagcagccctggcattctgcatttctcatgagctccagggagacgctggtgctgctggggcaggaccacactttgggtggcaaggGCTTGGCAGGCAATTCCAGGTGTCACCCTAGAGATG</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG031423]]

Revision as of 07:45, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT078943

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3067 nt

Genomic location

chr20-:21481165..21484354

Exon number

2

Exons

21481165..21482316,21482440..21484354

Genome context

Sequence
000001 AATGAAGGAT AGTTAGATGT AGAAGGTAAA ACAAAAGGAA TCAGCTTTTT GTGTCTGTGA CAGAGGATCT GATACTTGAT 000080
000081 GGTCTGACCA CAAGGCATCG CTCAGAAATC AGCAGTCCTT TTCACCCAGT GAACAGCCAG CTGCTTTGAG CAGAGAGAGC 000160
000161 TGTGGTTGGA ACTCCTGCTC TGTGACTCAG GGGAGGAGGC AGAGCTTGCC GCAGAATGCA GCCACTGCCC ACAGCCCCTG 000240
000241 TGCACTCCCT TTTCCCTTGT GCTGGCTTCC CGCTGCCAGC ATCTGCAAGT CTCTGCCTGG AGGTGAGCAG GAGGGTGCTG 000320
000321 GGCCCATTAG ACAGGTGGCT AGGGCTGGGG AGTTCATGGT CTTCACGCAG TTTCAGGTGG AGGTTGCAgg atatatggcc 000400
000401 cagcttcctg gccccaggtg gaacaaccct gagacatgtt cgccatttcc cacaggcccc cagtgggact gagccctagt 000480
000481 tgtcttcagt ggcaatcttc tcattaccac ctctcgtgtt gattcttttt cccttcactt tctcattttt ccatttcctt 000560
000561 gttggtcccc attaactact tgcacatgaa tctttgtctc agggtctgca tctgggggac cccaaaGACA CAGACACTTG 000640
000641 AGCTGTTACT CTGCCTTTAT CTTAGACCTA GCATTGGTCT CCAGAGGTCA CTCATGACTT CAGGGCCTAT TTTAATGGCC 000720
000721 TCTTTCCCCA TGTGTTCCTT GGGAATGTCC ATTGTTGATG CGTCCTTCTG TACTAAGTAG AGTTTTTGGG CTGCAAGGAG 000800
000801 GCAGTTAGCA CAGGGAACTA CGTAGTGAGG GACATGGAGA CTAAACAGCA GCTGGCCCAT CTCTCTGGCT TCTCATGGCC 000880
000881 AAGCCTGGGA CACACAGCTG CCCTCGTGCA GGTCCAGAAC TATGGCACTT GTTCCCTCAG GACCCATCCT CAAAGCCAGT 000960
000961 GACTTGGTCT TTTCCTATGA CAAAGGAGCT CCCAGAATGT GGCAGTCCCC CTTCCTAGAG GGAGAATCTG ACTGGGTCAG 001040
001041 GGAGGCACCC CCGGTTTGCA GAGCCCCCAT TGGTCAGGTT CAGTGTCCAA AACACCTGAG GGGCAAGTGG CTTCTCGAAG 001120
001121 TCCAGCCCAT ATGGTTACTT TTGACTTGGA CACTCAAGGC ACAGGGACAC ATGACACAGG CACAGGGTGT GACAACTGCA 001200
001201 TGCAGAAAGA GCCACTCTCA TTCCTCAGAA GAGGCTGTGG AGATGAGTgg ctgagccatg tgccccaaaa ttcatgttga 001280
001281 agtcctaacc cccagtatct taaaatgtga ccatatttag aaatagaacc tttaaagagc taactgggtt aaaatgaatt 001360
001361 cattagggta ggccctactt cagtatgacc ggtgtcttta gcagaagaag aaatcggtac agacacgcag aggggagggc 001440
001441 atgtgaggac atgggaagga aatgccactt gcaagccaag gagagaggcc tcagaagaaa ccagccctcc tgacaccttg 001520
001521 atcctagact tccagcctcc agaactgtaa gaaaatacat ttctgttgtt taagccacct ggtcttagag ttctatCTTG 001600
001601 AATTTCTCTC TGCTTCAGAC TTTTCTGTTT TGTTTTTTAG CCTAAATGCT ATTGAAAAGA GCAGAGAAGA TAGAGTGCAG 001680
001681 GCCCCTAGAG ACAGGATGGA ACGAAACACG CAGTGTGCAT CTGTGTCCTG CTCAGCATAC GCTCTTGGTC CCCACTGGGC 001760
001761 CATCTCGCTG CTGACTGGCA TCCCGAAGAA CAGGCAGATT GCACAGGGGC AGCTCTTTCC TCCAAAGCTG CAATGTGGTG 001840
001841 CATGAAGTCC TCAGATTTGG GAACTCATAC AGGCACTTGA GCTCAAACAT ACAGTTCTGA TCTAAGACAT CACAGGGTCA 001920
001921 TGGTGGAGCT GTTTCAGCTG CAGGTGGTAT TCCACCATTT GGTCCTCCCT GATGTCTCCT GGCACCTTTC CTTCTTCAGT 002000
002001 CTCAGCACTC TGAAGAAGCG TGCTTGTGAG CGCCGCGGGA CGATCCAGGA TGTCCAGGAT TGTGGACGAT CCTGTTCTTC 002080
002081 CCATCTGTGA GGTAAGGCAG ATTAGGAATG TCCACGTCTA GCTTGAATTT CACATCCAGC CATTGGCTGC CACCATGGCC 002160
002161 AGGGGCTTCT GCAGATGGAT CACCGTTTCC CTCCCAGGAG CAGGCAGGTG TCCAGTATCA GCCCCAGAAC ATCCCGGTCA 002240
002241 CCCATCTCCA TAGGGCTTGG ATGACATGAT GATGCTCTCT GTGCCTCTGA GGACGGCGCC TTGGGTCTTT GTACACTAAA 002320
002321 TCCCACCTTG TCCTCTCCTC TATTTGAAAC AGCCATTTCC CAAATCCCAA TCTGATGAAA TCCTGTTCTT CCTTCCCTCA 002400
002401 TGTTTCTCTA GGCCTCCTGT GGACTCCCAG AATGTAAAGT CAGCATTCCC TTGAGCCTTT TGGGGACTTA TAAGCACATG 002480
002481 GCCCAAGGTC CACCTAACTC TAGGTGTATC CTGTAGAACC AGTATTCTAA TCCTAACTTT AAAGATCTTA CAGGACCATA 002560
002561 GGGTGTGCGT AAAAAGCCTG CTGCAAATCA GAGTGCTTCA ACTGCGTATT AATGAGATGG AGGAAAGAGG CTGTGAGTGC 002640
002641 AGACAATGAG TCCCTGAGTA AATAGACTCC AGAGCCAAAG GTGTTCTCCA CACCGAAAGA ATGACTGTAC CCAGGGAAGG 002720
002721 AGCTCAGACT CACCTGGACA AACCCTGAGG GGACAGCCAT GTTCCAGTGT GGCTAGGAGG GTCTGGAGCT GGGCACGTCC 002800
002801 CCCATGTCTG CTTGATTCCC CTCTGGCCGA GTTCTACTCA GGTGAGTTGT GCTCATTCTT GCTTCCCCAG GGCCTGGATC 002880
002881 ACAgttcctc aagctttggg atacaaacga atcacctggg atttggataa aatgcagatt cgtgttcagc agccctggca 002960
002961 ttctgcattt ctcatgagct ccagggagac gctggtgctg ctggggcagg accacacttt gggtggcaag gGCTTGGCAG 003040
003041 GCAATTCCAG GTGTCACCCT AGAGATG
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Predicted Small Protein

Name NONHSAT078943_smProtein_215:478
Length 88
Molecular weight 9590.9472
Aromaticity 0.103448275862
Instability index 90.8724137931
Isoelectric point 11.1616821289
Runs 13
Runs residual 0.0111658456486
Runs probability 0.0308725014608
Amino acid sequence MQPLPTAPVHSLFPCAGFPLPASASLCLEVSRRVLGPLDRWLGLGSSWSSRSFRWRLQDI
WPSFLAPGGTTLRHVRHFPQAPSGTEP
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLHHHLLLLLLEELLLLLLLLHHHHHHHHHH
LHHHLLLLLLEEEEELLLLLLLLLLLL
PRMN -
PiMo -