Difference between revisions of "ENST00000442116.1"

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sequence = <dnaseq>AGGACCCACCCGAGGGTGGGTCACCATGGCTTTGGAGCGCCTGGTAGTGTGGTGTGTCCACAGTGAAGACCAGAGTTTCATTGTCCTTAAGACTGACCTGGGGAGATGTGGCTGTAGGCCATTGAGGAAGACGGCACCGAAAGCGAAGGAAGCTCCTGCTCCTCCTAAAGCCGAAGCCAAAGCGAAGGCCTTAAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCGCAGCCACACGCAAAAAAGAAGATCCGCATGTCACTCACCTTCAGGCGGCCCAAGACACTGCGACTCCGGAGGCAGCCCAGATATCCTCGGAAGAGCACCCCCAGGAGAAACAAGCTTGGCCACTATGCTATCATCAAGTTTCCGCTGACCACTGAGTCGGCCGTGAAGAAGATAGAAGAAAACAACACGCTTGTGTTCACTGTGGATGTTAAAGCCAACAAGCACCAGATCAGACAGGCTGTGAAGAAGCTCTATGACAGTGATGTGGCCAAGGTCACCACCCTGATTTGTCCTGATAAAGAGAAGGCATATGTTCGACTTGCTCCTGATTATGATGCTTTCGATGTTGTAACAAAATTGGGATCACCTAAACTGAGTCCAGCTGGCTAACTCTAAATATATGTGTATCTTTTCAGCATAAAAAAAATAATGTTTTTCATAAGAATGACAACTTAATTAGAATCAAATCTATAAGCTTTAAGATTTTACGTTTCTAGTAAGTATAATATTAGCTTATTTGACTAGAACTCAAGCAGAATAGGAATTTATGCTTGTTTTATATTCAATAATGATAATTTTGAAGATATAGTTGTTTTATTACACCAAAAATACTATATTAATCTTATTTAACTAAGTTTTATCCAAATCATGTTAACTTAAGAAACATTTGATCAGTTCCTATATTTCTAGGAGTTTGGTGAATATTTATTTATAAATGCTTATTTTTTTCCAAGCCAAGTTAGAATAGAGCACTTTTAGAGGTTTTCATAAATGAATTTTGCAATGCTCTCTGGAGTTAAGAAAATATCACATATACATAACATACATTAATAGATACACAAACACAAATAGAGATTTCATAGCTTTCATCCTGAAATTTCAGCCATGAATCAGGCATAAATATTCTGATGGTTAATTTCAGACATCTACTTGATCGGATTGAGAGACACACATAGCTGGTCAAACACGATTTCAGCCATGAATCAGGCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGACTGGATTAAGAGACACACATAGCTGGTCAAACGTGATTTC</dnaseq>|
 
sequence = <dnaseq>AGGACCCACCCGAGGGTGGGTCACCATGGCTTTGGAGCGCCTGGTAGTGTGGTGTGTCCACAGTGAAGACCAGAGTTTCATTGTCCTTAAGACTGACCTGGGGAGATGTGGCTGTAGGCCATTGAGGAAGACGGCACCGAAAGCGAAGGAAGCTCCTGCTCCTCCTAAAGCCGAAGCCAAAGCGAAGGCCTTAAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCGCAGCCACACGCAAAAAAGAAGATCCGCATGTCACTCACCTTCAGGCGGCCCAAGACACTGCGACTCCGGAGGCAGCCCAGATATCCTCGGAAGAGCACCCCCAGGAGAAACAAGCTTGGCCACTATGCTATCATCAAGTTTCCGCTGACCACTGAGTCGGCCGTGAAGAAGATAGAAGAAAACAACACGCTTGTGTTCACTGTGGATGTTAAAGCCAACAAGCACCAGATCAGACAGGCTGTGAAGAAGCTCTATGACAGTGATGTGGCCAAGGTCACCACCCTGATTTGTCCTGATAAAGAGAAGGCATATGTTCGACTTGCTCCTGATTATGATGCTTTCGATGTTGTAACAAAATTGGGATCACCTAAACTGAGTCCAGCTGGCTAACTCTAAATATATGTGTATCTTTTCAGCATAAAAAAAATAATGTTTTTCATAAGAATGACAACTTAATTAGAATCAAATCTATAAGCTTTAAGATTTTACGTTTCTAGTAAGTATAATATTAGCTTATTTGACTAGAACTCAAGCAGAATAGGAATTTATGCTTGTTTTATATTCAATAATGATAATTTTGAAGATATAGTTGTTTTATTACACCAAAAATACTATATTAATCTTATTTAACTAAGTTTTATCCAAATCATGTTAACTTAAGAAACATTTGATCAGTTCCTATATTTCTAGGAGTTTGGTGAATATTTATTTATAAATGCTTATTTTTTTCCAAGCCAAGTTAGAATAGAGCACTTTTAGAGGTTTTCATAAATGAATTTTGCAATGCTCTCTGGAGTTAAGAAAATATCACATATACATAACATACATTAATAGATACACAAACACAAATAGAGATTTCATAGCTTTCATCCTGAAATTTCAGCCATGAATCAGGCATAAATATTCTGATGGTTAATTTCAGACATCTACTTGATCGGATTGAGAGACACACATAGCTGGTCAAACACGATTTCAGCCATGAATCAGGCATAAATATTCTGATGGTTAATTTTAGACATCTACTTGACTGGATTAAGAGACACACATAGCTGGTCAAACGTGATTTC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:ENSG00000228463.4]]
+
[[Category:Intergenic]][[Category:ENSG00000228463.4]][[Category:lnc-FAM138A-5]]

Revision as of 08:10, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000442116.1

Source

Gencode19

Same with

lnc-FAM138A-5:4

Classification

intergenic

Length

1292 nt

Genomic location

chr1-:227615..234484

Exon number

2

Exons

227615..228776,234355..234484

Genome context

Sequence
000001 AGGACCCACC CGAGGGTGGG TCACCATGGC TTTGGAGCGC CTGGTAGTGT GGTGTGTCCA CAGTGAAGAC CAGAGTTTCA 000080
000081 TTGTCCTTAA GACTGACCTG GGGAGATGTG GCTGTAGGCC ATTGAGGAAG ACGGCACCGA AAGCGAAGGA AGCTCCTGCT 000160
000161 CCTCCTAAAG CCGAAGCCAA AGCGAAGGCC TTAAAGGCCA AGAAGGCAGT GTTGAAAGGT GTCCGCAGCC ACACGCAAAA 000240
000241 AAGAAGATCC GCATGTCACT CACCTTCAGG CGGCCCAAGA CACTGCGACT CCGGAGGCAG CCCAGATATC CTCGGAAGAG 000320
000321 CACCCCCAGG AGAAACAAGC TTGGCCACTA TGCTATCATC AAGTTTCCGC TGACCACTGA GTCGGCCGTG AAGAAGATAG 000400
000401 AAGAAAACAA CACGCTTGTG TTCACTGTGG ATGTTAAAGC CAACAAGCAC CAGATCAGAC AGGCTGTGAA GAAGCTCTAT 000480
000481 GACAGTGATG TGGCCAAGGT CACCACCCTG ATTTGTCCTG ATAAAGAGAA GGCATATGTT CGACTTGCTC CTGATTATGA 000560
000561 TGCTTTCGAT GTTGTAACAA AATTGGGATC ACCTAAACTG AGTCCAGCTG GCTAACTCTA AATATATGTG TATCTTTTCA 000640
000641 GCATAAAAAA AATAATGTTT TTCATAAGAA TGACAACTTA ATTAGAATCA AATCTATAAG CTTTAAGATT TTACGTTTCT 000720
000721 AGTAAGTATA ATATTAGCTT ATTTGACTAG AACTCAAGCA GAATAGGAAT TTATGCTTGT TTTATATTCA ATAATGATAA 000800
000801 TTTTGAAGAT ATAGTTGTTT TATTACACCA AAAATACTAT ATTAATCTTA TTTAACTAAG TTTTATCCAA ATCATGTTAA 000880
000881 CTTAAGAAAC ATTTGATCAG TTCCTATATT TCTAGGAGTT TGGTGAATAT TTATTTATAA ATGCTTATTT TTTTCCAAGC 000960
000961 CAAGTTAGAA TAGAGCACTT TTAGAGGTTT TCATAAATGA ATTTTGCAAT GCTCTCTGGA GTTAAGAAAA TATCACATAT 001040
001041 ACATAACATA CATTAATAGA TACACAAACA CAAATAGAGA TTTCATAGCT TTCATCCTGA AATTTCAGCC ATGAATCAGG 001120
001121 CATAAATATT CTGATGGTTA ATTTCAGACA TCTACTTGAT CGGATTGAGA GACACACATA GCTGGTCAAA CACGATTTCA 001200
001201 GCCATGAATC AGGCATAAAT ATTCTGATGG TTAATTTTAG ACATCTACTT GACTGGATTA AGAGACACAC ATAGCTGGTC 001280
001281 AAACGTGATT TC
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