Difference between revisions of "NONHSAT123449"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGGCTGATGCGTTGGCTGTTGACTCAGTGAAGTTCCCACGGCTGGCTTTGGCAACAGACCTAGGGCTAGACTATGTTGCCTGGAAGATAAAGAAGCATTCACTGCTCTTCCCATCCCACTGTATTGCCTGGCTAGTGTTTGATCAGCTTTTCAATGTGCGGTCAAGTTGTTGATTGAGCTAGTAACTTATAAGTGAATTATCTTTATGATTGTGTTCATTTCTAACCATGTCCCTGTGCAGTTTACGAACAATACTAATCATAAGCAAATACTTTCACCTGGGCCCAATGATTTTTACCTGTACTGACCAAGTGAACAACTTAGGCTGGCTTATGCCAGTGAAGTGGTGCTTCTCCCTCCTGACATGAGACTTCACTGAAGTGACTTGCCAAGAAGAAATGAGAAGATGGCACGTGGAGAGTCATGTGGATGCTCTTCTCTGCCTCAAGCTCAGCTCTCACGTGCTTGATCTGTTCTGTCTGTGTCCTTTAATATAAATGTTTAAATGTTTAAATGTCATTGGGTACTTGGTTATAGGAGGAGGCAGAGCTCTGAGTGGAATCCATGATGGTCCTGAGACCAAAGATATGTATTTTTTTCTTTTCATGTATGTATGTCTTATATCCCCAATTGAGAATTCTATCACTGTGAGTGATACAGCTTCAGAATCCTGAAGGCTAAGCTATTAGGTTTGAACAATATGAAATTGCTGGTTTGCAACTATATTATATCTACAAAAGGGCAAGTTCATATAGCTTAACCTAAAAAGTAAAAATCAAATGACATCAGGTATGTGCAAAAATGTCATAAATGGCTGGTGAATATATAAGAAGTTCAACATTACTAAGAGCCAAAAATTGAAAATTAAAATAAGAAACCTTTTTTTTACTTCATCAAATAGTAAACCAACAATTAGTCCTATACTTTCCTGGTTTGAGCATTGATTAATACAACCAGTAAGTATGCAAATATTTAAACTCAGTGTTTTTCACTGATAGATATTTATATCAAGGTGCTAGATTGATATGCATATAAATATTTTTGCACAAATATGTTCACAATTTGTTTATAACAGCAGAAAATGGAAAACAAACTAAATAGCAATAGGGAACGTAAGTTAATCATGCTGTATCCATATTACGTAGTGTTATATAATTAAAATTACATAATTTATTAAAATGATATTTACCAAGTGTTTTTAATGACACTGGAAAACATGTAGAATATAAGAAGTGAATAATTTCCGAATAGTATGTACAATATGATAATTGTGTAAAAAGCTGTAAACATAGAAAAGAACAAGAAAATACACCAAGACATTGATAATGAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>GGGCTGATGCGTTGGCTGTTGACTCAGTGAAGTTCCCACGGCTGGCTTTGGCAACAGACCTAGGGCTAGACTATGTTGCCTGGAAGATAAAGAAGCATTCACTGCTCTTCCCATCCCACTGTATTGCCTGGCTAGTGTTTGATCAGCTTTTCAATGTGCGGTCAAGTTGTTGATTGAGCTAGTAACTTATAAGTGAATTATCTTTATGATTGTGTTCATTTCTAACCATGTCCCTGTGCAGTTTACGAACAATACTAATCATAAGCAAATACTTTCACCTGGGCCCAATGATTTTTACCTGTACTGACCAAGTGAACAACTTAGGCTGGCTTATGCCAGTGAAGTGGTGCTTCTCCCTCCTGACATGAGACTTCACTGAAGTGACTTGCCAAGAAGAAATGAGAAGATGGCACGTGGAGAGTCATGTGGATGCTCTTCTCTGCCTCAAGCTCAGCTCTCACGTGCTTGATCTGTTCTGTCTGTGTCCTTTAATATAAATGTTTAAATGTTTAAATGTCATTGGGTACTTGGTTATAGGAGGAGGCAGAGCTCTGAGTGGAATCCATGATGGTCCTGAGACCAAAGATATGTATTTTTTTCTTTTCATGTATGTATGTCTTATATCCCCAATTGAGAATTCTATCACTGTGAGTGATACAGCTTCAGAATCCTGAAGGCTAAGCTATTAGGTTTGAACAATATGAAATTGCTGGTTTGCAACTATATTATATCTACAAAAGGGCAAGTTCATATAGCTTAACCTAAAAAGTAAAAATCAAATGACATCAGGTATGTGCAAAAATGTCATAAATGGCTGGTGAATATATAAGAAGTTCAACATTACTAAGAGCCAAAAATTGAAAATTAAAATAAGAAACCTTTTTTTTACTTCATCAAATAGTAAACCAACAATTAGTCCTATACTTTCCTGGTTTGAGCATTGATTAATACAACCAGTAAGTATGCAAATATTTAAACTCAGTGTTTTTCACTGATAGATATTTATATCAAGGTGCTAGATTGATATGCATATAAATATTTTTGCACAAATATGTTCACAATTTGTTTATAACAGCAGAAAATGGAAAACAAACTAAATAGCAATAGGGAACGTAAGTTAATCATGCTGTATCCATATTACGTAGTGTTATATAATTAAAATTACATAATTTATTAAAATGATATTTACCAAGTGTTTTTAATGACACTGGAAAACATGTAGAATATAAGAAGTGAATAATTTCCGAATAGTATGTACAATATGATAATTGTGTAAAAAGCTGTAAACATAGAAAAGAACAAGAAAATACACCAAGACATTGATAATGAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(S)]] | + | [[Category:Intronic(S)]][[Category:NONHSAG048846]] |
Revision as of 08:16, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT123449 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(S) |
| Length |
1344 nt |
| Genomic location |
chr7+:133446300..133447624 |
| Exon number |
1 |
| Exons |
133446300..133447624 |
| Genome context |
|
| Sequence |
000001 GGGCTGATGC GTTGGCTGTT GACTCAGTGA AGTTCCCACG GCTGGCTTTG GCAACAGACC TAGGGCTAGA CTATGTTGCC 000080
000081 TGGAAGATAA AGAAGCATTC ACTGCTCTTC CCATCCCACT GTATTGCCTG GCTAGTGTTT GATCAGCTTT TCAATGTGCG 000160 000161 GTCAAGTTGT TGATTGAGCT AGTAACTTAT AAGTGAATTA TCTTTATGAT TGTGTTCATT TCTAACCATG TCCCTGTGCA 000240 000241 GTTTACGAAC AATACTAATC ATAAGCAAAT ACTTTCACCT GGGCCCAATG ATTTTTACCT GTACTGACCA AGTGAACAAC 000320 000321 TTAGGCTGGC TTATGCCAGT GAAGTGGTGC TTCTCCCTCC TGACATGAGA CTTCACTGAA GTGACTTGCC AAGAAGAAAT 000400 000401 GAGAAGATGG CACGTGGAGA GTCATGTGGA TGCTCTTCTC TGCCTCAAGC TCAGCTCTCA CGTGCTTGAT CTGTTCTGTC 000480 000481 TGTGTCCTTT AATATAAATG TTTAAATGTT TAAATGTCAT TGGGTACTTG GTTATAGGAG GAGGCAGAGC TCTGAGTGGA 000560 000561 ATCCATGATG GTCCTGAGAC CAAAGATATG TATTTTTTTC TTTTCATGTA TGTATGTCTT ATATCCCCAA TTGAGAATTC 000640 000641 TATCACTGTG AGTGATACAG CTTCAGAATC CTGAAGGCTA AGCTATTAGG TTTGAACAAT ATGAAATTGC TGGTTTGCAA 000720 000721 CTATATTATA TCTACAAAAG GGCAAGTTCA TATAGCTTAA CCTAAAAAGT AAAAATCAAA TGACATCAGG TATGTGCAAA 000800 000801 AATGTCATAA ATGGCTGGTG AATATATAAG AAGTTCAACA TTACTAAGAG CCAAAAATTG AAAATTAAAA TAAGAAACCT 000880 000881 TTTTTTTACT TCATCAAATA GTAAACCAAC AATTAGTCCT ATACTTTCCT GGTTTGAGCA TTGATTAATA CAACCAGTAA 000960 000961 GTATGCAAAT ATTTAAACTC AGTGTTTTTC ACTGATAGAT ATTTATATCA AGGTGCTAGA TTGATATGCA TATAAATATT 001040 001041 TTTGCACAAA TATGTTCACA ATTTGTTTAT AACAGCAGAA AATGGAAAAC AAACTAAATA GCAATAGGGA ACGTAAGTTA 001120 001121 ATCATGCTGT ATCCATATTA CGTAGTGTTA TATAATTAAA ATTACATAAT TTATTAAAAT GATATTTACC AAGTGTTTTT 001200 001201 AATGACACTG GAAAACATGT AGAATATAAG AAGTGAATAA TTTCCGAATA GTATGTACAA TATGATAATT GTGTAAAAAG 001280 001281 CTGTAAACAT AGAAAAGAAC AAGAAAATAC ACCAAGACAT TGATAATGAA AAAAAAAAAA AAAA |
Predicted Small Protein
| Name | NONHSAT123449_smProtein_497:673 |
| Length | 59 |
| Molecular weight | 6352.31 |
| Aromaticity | 0.120689655172 |
| Instability index | 47.6965517241 |
| Isoelectric point | 4.58123779297 |
| Runs | 10 |
| Runs residual | 0.01582038651 |
| Runs probability | 0.0475269387035 |
| Amino acid sequence | MFKCLNVIGYLVIGGGRALSGIHDGPETKDMYFFLFMYVCLISPIENSITVSDTASES |
| Secondary structure | LEEEEEEEEEEEELLLLEELLLLLLLLLLHHHEEEEEEEEEELLLLLEEEEELLLLLL |
| PRMN | - |
| PiMo | - |
