Difference between revisions of "NONHSAT056359"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>GGTTAATTCTTGGATGACGTCGGCGTTGCTGGGAGAATGTGCCGTTCCTGCCCTGCCTCCACCCACCTCGGGAGCAGAAGCCCGGCCTGGACACCCCTCGGCCTGGACACCCCTCGAAGGAGAGGGCGCTTCCTTGATGACTAGGCTACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCCAGATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACACTGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGAAGTGAGTCAAGATCACAGGCCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGGTCAGAAGGGCCCTCCGGACAGGCTGAGGGCAGGGCAGGAGCTGGGCAGAGCTGAATTTTGTAGAGGAGATGAGGGAATAGAGCTTGCCACTTTCTTCTCTCttttttttatttttattttttatttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctc</dnaseq>|
 
sequence = <dnaseq>GGTTAATTCTTGGATGACGTCGGCGTTGCTGGGAGAATGTGCCGTTCCTGCCCTGCCTCCACCCACCTCGGGAGCAGAAGCCCGGCCTGGACACCCCTCGGCCTGGACACCCCTCGAAGGAGAGGGCGCTTCCTTGATGACTAGGCTACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCCAGATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACACTGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGAAGTGAGTCAAGATCACAGGCCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGGTCAGAAGGGCCCTCCGGACAGGCTGAGGGCAGGGCAGGAGCTGGGCAGAGCTGAATTTTGTAGAGGAGATGAGGGAATAGAGCTTGCCACTTTCTTCTCTCttttttttatttttattttttatttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctc</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:NONHSAG022946]]

Revision as of 08:19, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT056359

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

565 nt

Genomic location

chr17-:78180515..78183341

Exon number

3

Exons

78180515..78180853,78181396..78181484,78183205..78183341

Genome context

Sequence
000001 GGTTAATTCT TGGATGACGT CGGCGTTGCT GGGAGAATGT GCCGTTCCTG CCCTGCCTCC ACCCACCTCG GGAGCAGAAG 000080
000081 CCCGGCCTGG ACACCCCTCG GCCTGGACAC CCCTCGAAGG AGAGGGCGCT TCCTTGATGA CTAGGCTACT TTTGCCCACT 000160
000161 GTAAAAGGCA CCGTCATCCT GGTATCAAGA TTCTGGAGAG GCCAGATTTG AAATCAAGTT TGTTTGAGAC GTGGATGACG 000240
000241 ATGGGGAAGA TGTCCATCCT GTGCAGGGTG CAGACACTGT CCAGCTGGAC GTCCAGGAGG GCATGGGTGT TCTTTGTGGG 000320
000321 AGGGAGAGAA GAAGTGAGTC AAGATCACAG GCCTCAGAGG AAGCAAAGGG AGCCAACGCC CAGGTCAGAA GGGCCCTCCG 000400
000401 GACAGGCTGA GGGCAGGGCA GGAGCTGGGC AGAGCTGAAT TTTGTAGAGG AGATGAGGGA ATAGAGCTTG CCACTTTCTT 000480
000481 CTCTCttttt tttattttta ttttttattt ttttgagacg gagtctcgct ctgtcgccca ggctggagtg cagtggcgcg 000560
000561 atctc
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Predicted Small Protein

Name NONHSAT056359_smProtein_302:409
Length 36
Molecular weight 3818.2284
Aromaticity 0.0
Instability index 100.454285714
Isoelectric point 11.2509155273
Runs 5
Runs residual 0.0382566585956
Runs probability 0.0338632750397
Amino acid sequence MGVLCGRERRSESRSQASEEAKGANAQVRRALRTG
Secondary structure LLEELLLLLLLLLHHHHHHHHHHHHHHHHHHHHLL
PRMN -
PiMo -