Difference between revisions of "NONHSAT123886"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
Line 42: Line 42:
 
sequence = <dnaseq>CTAGCCTCCAAGACAGCCCCGCCGCCAGAACAGCCTCTCCTCCAGGACCGGCCAGCCTACGAGAGAGCCCCGCCTACGGTACAACCCGCCTCCGGGACCGCAGGACTCCACCTCCGAGACAGCTCAGTCCCCAGGACAGTCCCGCCTCCGAGACGGCCCCGCCTCCAGGACGGCCCCTACCTCCGAGAccgccccgcctccgggaccgccccgccccgcctcgcctccgacacgtcccCCGGGCGCCACTGCAGAGCCTGTCCGTCAGTCCCTAGGTATCCGCACTGCTCAGGGGAGGATTCCCTGGGAGCACCCACCAGCTGAGATCTGCACATCAGCCACAATCCTCTCAGGACGGCGGAAAGGGAAGGGCTCAGCCGCCAGCCTGGCCACAGCCTGCATCATCTCATCCCAGAGGCGGAGCACAGGCTCGGGGTCCTTCAGGGCCTGAAGGTTTGTGGTTGGCACTGTCAGGATGATGTTGTCCGTGGCCAGCTCTCCCCAGGGAGCCAGGTTCTCCTGCATCTGCCTCTTCCACTCCTCCAGCGATGTCTTACCTGGGAATAAATATCATGGAACCTACCACACCCACTTCTCCAACTTCCCTTGAGCTGAAAAATACCATTTGAACTCTGGAAGAACATTGCAATAATGAACTACTATCACAGGCGTCTATAGGCTGTAAAGTGAAGAAAAGGCTTCCTGACTCTTCTCTTTGTCTGCCCTGAAGTCTCCATGGACACAGGGTATTCCGTATCTTCTGCCTCCATGTTCCCTCCCAACAGTTCTTCCTCTTTCTCTCCACCAAAGCTCATCCCTCTCCCATTTAGCAACCACCCCACAGTTCCCACGGCATCTGCCACTCTTCCTCCTCCCTAAATGTTCACTCCACTTACCCAGCTTGTAGTATGGGGCAGGCACAGCTCCCCTGATAGTGACAGGCACAGGGCCTAGTTGGCTGCCCTTGGGCACGATGACGTAGAGGAGGCCGCCCCAGAGGCAGGAGACTGACCGCTCAGTCCTGTCCATCCAGCATTGGTGAGTCACCACGGGGGCTCGAGATAGCTTCCTGGCCTTGGTAAGGTCATCGGTGTGGCAGCCAATCTGTACCTGGACAGGTGATTCCACCAAGCGTTGGAGAAATTAGAGTCTTTGTGATGCTTTGTGATGTGCGTGTGAGGTTGTGTAGATGGAAGGTATTAGACAAACATGCCCATGAAACCCCAGCTTCCCTTTTCTATGTGCTAGGCATGGAAACTTATGAAATTTTAGCACTCCAAAGTCATTTGGACTTCAAGGCATTTAAAATCATTTTTCTAAGGATTTAAACAGCTCCACTATAAGTCTTCACCTGACATGAATTGGTGAGAGACCAGGCTGATCCTGGCAAAGGTCTTGTGTCTTTCTGCCAGGCAAAATCCTGGGTTCTTCTAGCAGGACCTAAGCCAGTCTGGGGACGCTGATATTGAGGATGAGCTGGGGGACTCTGCTCTGTCCTCTGTGAACACACAGGAGGCCCATCCAGAGTGAGTGAGGTTGATTCTCTCTCCCTCTTTGCCCAGAGCTTCCCTTTCTGGCCGCCAGATGGGTGGAGATCTGTTTTGTCTGGAGTCCTGGAGTTGCTTTTCTTAGGTTTGATATAAGCAAGCTCCAGAAAGAATGCTGACAGAAAAGGGACCCTAGCTGTGGTAGGAAGTGGCCCTCAGAGTCAAGGAGGCAGGATGAATTTAAATTCTGCATGTAGGGCATATTTTGGGGAGTGATGGGATTATGCACACCCTTCAGGTGTCAAGATAAAGAGATAAaaccagagtttgtgcagaatgagcttgctgacacacagcctaaatttgtaccgcatgtttcatactaactccctctgagtttgcacatgggacccatgaggaggcatgaagaggtaactgcccatgcccgaggattttccagcccttccttttctttctatcaatcacctactaatcacagaatccactccctacaccttttctactaaaataactctttaaaataagtacaatgggacagatttgagctgggctcctgtctccttgttaatcaaattgcaataaaatgttttcttttgtt</dnaseq>|
 
sequence = <dnaseq>CTAGCCTCCAAGACAGCCCCGCCGCCAGAACAGCCTCTCCTCCAGGACCGGCCAGCCTACGAGAGAGCCCCGCCTACGGTACAACCCGCCTCCGGGACCGCAGGACTCCACCTCCGAGACAGCTCAGTCCCCAGGACAGTCCCGCCTCCGAGACGGCCCCGCCTCCAGGACGGCCCCTACCTCCGAGAccgccccgcctccgggaccgccccgccccgcctcgcctccgacacgtcccCCGGGCGCCACTGCAGAGCCTGTCCGTCAGTCCCTAGGTATCCGCACTGCTCAGGGGAGGATTCCCTGGGAGCACCCACCAGCTGAGATCTGCACATCAGCCACAATCCTCTCAGGACGGCGGAAAGGGAAGGGCTCAGCCGCCAGCCTGGCCACAGCCTGCATCATCTCATCCCAGAGGCGGAGCACAGGCTCGGGGTCCTTCAGGGCCTGAAGGTTTGTGGTTGGCACTGTCAGGATGATGTTGTCCGTGGCCAGCTCTCCCCAGGGAGCCAGGTTCTCCTGCATCTGCCTCTTCCACTCCTCCAGCGATGTCTTACCTGGGAATAAATATCATGGAACCTACCACACCCACTTCTCCAACTTCCCTTGAGCTGAAAAATACCATTTGAACTCTGGAAGAACATTGCAATAATGAACTACTATCACAGGCGTCTATAGGCTGTAAAGTGAAGAAAAGGCTTCCTGACTCTTCTCTTTGTCTGCCCTGAAGTCTCCATGGACACAGGGTATTCCGTATCTTCTGCCTCCATGTTCCCTCCCAACAGTTCTTCCTCTTTCTCTCCACCAAAGCTCATCCCTCTCCCATTTAGCAACCACCCCACAGTTCCCACGGCATCTGCCACTCTTCCTCCTCCCTAAATGTTCACTCCACTTACCCAGCTTGTAGTATGGGGCAGGCACAGCTCCCCTGATAGTGACAGGCACAGGGCCTAGTTGGCTGCCCTTGGGCACGATGACGTAGAGGAGGCCGCCCCAGAGGCAGGAGACTGACCGCTCAGTCCTGTCCATCCAGCATTGGTGAGTCACCACGGGGGCTCGAGATAGCTTCCTGGCCTTGGTAAGGTCATCGGTGTGGCAGCCAATCTGTACCTGGACAGGTGATTCCACCAAGCGTTGGAGAAATTAGAGTCTTTGTGATGCTTTGTGATGTGCGTGTGAGGTTGTGTAGATGGAAGGTATTAGACAAACATGCCCATGAAACCCCAGCTTCCCTTTTCTATGTGCTAGGCATGGAAACTTATGAAATTTTAGCACTCCAAAGTCATTTGGACTTCAAGGCATTTAAAATCATTTTTCTAAGGATTTAAACAGCTCCACTATAAGTCTTCACCTGACATGAATTGGTGAGAGACCAGGCTGATCCTGGCAAAGGTCTTGTGTCTTTCTGCCAGGCAAAATCCTGGGTTCTTCTAGCAGGACCTAAGCCAGTCTGGGGACGCTGATATTGAGGATGAGCTGGGGGACTCTGCTCTGTCCTCTGTGAACACACAGGAGGCCCATCCAGAGTGAGTGAGGTTGATTCTCTCTCCCTCTTTGCCCAGAGCTTCCCTTTCTGGCCGCCAGATGGGTGGAGATCTGTTTTGTCTGGAGTCCTGGAGTTGCTTTTCTTAGGTTTGATATAAGCAAGCTCCAGAAAGAATGCTGACAGAAAAGGGACCCTAGCTGTGGTAGGAAGTGGCCCTCAGAGTCAAGGAGGCAGGATGAATTTAAATTCTGCATGTAGGGCATATTTTGGGGAGTGATGGGATTATGCACACCCTTCAGGTGTCAAGATAAAGAGATAAaaccagagtttgtgcagaatgagcttgctgacacacagcctaaatttgtaccgcatgtttcatactaactccctctgagtttgcacatgggacccatgaggaggcatgaagaggtaactgcccatgcccgaggattttccagcccttccttttctttctatcaatcacctactaatcacagaatccactccctacaccttttctactaaaataactctttaaaataagtacaatgggacagatttgagctgggctcctgtctccttgttaatcaaattgcaataaaatgttttcttttgtt</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG049045]]

Revision as of 08:29, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT123886

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2106 nt

Genomic location

chr7-:143509061..143534026

Exon number

2

Exons

143509061..143510872,143533733..143534026

Genome context

Sequence
000001 CTAGCCTCCA AGACAGCCCC GCCGCCAGAA CAGCCTCTCC TCCAGGACCG GCCAGCCTAC GAGAGAGCCC CGCCTACGGT 000080
000081 ACAACCCGCC TCCGGGACCG CAGGACTCCA CCTCCGAGAC AGCTCAGTCC CCAGGACAGT CCCGCCTCCG AGACGGCCCC 000160
000161 GCCTCCAGGA CGGCCCCTAC CTCCGAGAcc gccccgcctc cgggaccgcc ccgccccgcc tcgcctccga cacgtcccCC 000240
000241 GGGCGCCACT GCAGAGCCTG TCCGTCAGTC CCTAGGTATC CGCACTGCTC AGGGGAGGAT TCCCTGGGAG CACCCACCAG 000320
000321 CTGAGATCTG CACATCAGCC ACAATCCTCT CAGGACGGCG GAAAGGGAAG GGCTCAGCCG CCAGCCTGGC CACAGCCTGC 000400
000401 ATCATCTCAT CCCAGAGGCG GAGCACAGGC TCGGGGTCCT TCAGGGCCTG AAGGTTTGTG GTTGGCACTG TCAGGATGAT 000480
000481 GTTGTCCGTG GCCAGCTCTC CCCAGGGAGC CAGGTTCTCC TGCATCTGCC TCTTCCACTC CTCCAGCGAT GTCTTACCTG 000560
000561 GGAATAAATA TCATGGAACC TACCACACCC ACTTCTCCAA CTTCCCTTGA GCTGAAAAAT ACCATTTGAA CTCTGGAAGA 000640
000641 ACATTGCAAT AATGAACTAC TATCACAGGC GTCTATAGGC TGTAAAGTGA AGAAAAGGCT TCCTGACTCT TCTCTTTGTC 000720
000721 TGCCCTGAAG TCTCCATGGA CACAGGGTAT TCCGTATCTT CTGCCTCCAT GTTCCCTCCC AACAGTTCTT CCTCTTTCTC 000800
000801 TCCACCAAAG CTCATCCCTC TCCCATTTAG CAACCACCCC ACAGTTCCCA CGGCATCTGC CACTCTTCCT CCTCCCTAAA 000880
000881 TGTTCACTCC ACTTACCCAG CTTGTAGTAT GGGGCAGGCA CAGCTCCCCT GATAGTGACA GGCACAGGGC CTAGTTGGCT 000960
000961 GCCCTTGGGC ACGATGACGT AGAGGAGGCC GCCCCAGAGG CAGGAGACTG ACCGCTCAGT CCTGTCCATC CAGCATTGGT 001040
001041 GAGTCACCAC GGGGGCTCGA GATAGCTTCC TGGCCTTGGT AAGGTCATCG GTGTGGCAGC CAATCTGTAC CTGGACAGGT 001120
001121 GATTCCACCA AGCGTTGGAG AAATTAGAGT CTTTGTGATG CTTTGTGATG TGCGTGTGAG GTTGTGTAGA TGGAAGGTAT 001200
001201 TAGACAAACA TGCCCATGAA ACCCCAGCTT CCCTTTTCTA TGTGCTAGGC ATGGAAACTT ATGAAATTTT AGCACTCCAA 001280
001281 AGTCATTTGG ACTTCAAGGC ATTTAAAATC ATTTTTCTAA GGATTTAAAC AGCTCCACTA TAAGTCTTCA CCTGACATGA 001360
001361 ATTGGTGAGA GACCAGGCTG ATCCTGGCAA AGGTCTTGTG TCTTTCTGCC AGGCAAAATC CTGGGTTCTT CTAGCAGGAC 001440
001441 CTAAGCCAGT CTGGGGACGC TGATATTGAG GATGAGCTGG GGGACTCTGC TCTGTCCTCT GTGAACACAC AGGAGGCCCA 001520
001521 TCCAGAGTGA GTGAGGTTGA TTCTCTCTCC CTCTTTGCCC AGAGCTTCCC TTTCTGGCCG CCAGATGGGT GGAGATCTGT 001600
001601 TTTGTCTGGA GTCCTGGAGT TGCTTTTCTT AGGTTTGATA TAAGCAAGCT CCAGAAAGAA TGCTGACAGA AAAGGGACCC 001680
001681 TAGCTGTGGT AGGAAGTGGC CCTCAGAGTC AAGGAGGCAG GATGAATTTA AATTCTGCAT GTAGGGCATA TTTTGGGGAG 001760
001761 TGATGGGATT ATGCACACCC TTCAGGTGTC AAGATAAAGA GATAAaacca gagtttgtgc agaatgagct tgctgacaca 001840
001841 cagcctaaat ttgtaccgca tgtttcatac taactccctc tgagtttgca catgggaccc atgaggaggc atgaagaggt 001920
001921 aactgcccat gcccgaggat tttccagccc ttccttttct ttctatcaat cacctactaa tcacagaatc cactccctac 002000
002001 accttttcta ctaaaataac tctttaaaat aagtacaatg ggacagattt gagctgggct cctgtctcct tgttaatcaa 002080
002081 attgcaataa aatgttttct tttgtt
[back to top]

Predicted Small Protein

Name NONHSAT123886_smProtein_1157:1327
Length 57
Molecular weight 6679.9412
Aromaticity 0.125
Instability index 42.6108928571
Isoelectric point 8.73956298828
Runs 8
Runs residual 0.0104410616706
Runs probability 0.0448463169051
Amino acid sequence MLCDVRVRLCRWKVLDKHAHETPASLFYVLGMETYEILALQSHLDFKAFKIIFLRI
Secondary structure LLLLLLLHHHHHHHHLLLLLLLLHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHEEL
PRMN -
PiMo -