Difference between revisions of "NONHSAT102562"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| Line 42: | Line 42: | ||
sequence = <dnaseq>ATTGGCAGAGCAAAAAGGGAACCAAGATCTACCAGTTCATTGGTAAACACTACTCTCTAGCTATTGACAAGAAGATGCCCTGAGATTTTACGTCAATTTCTTGAAGACAGAGACAGCCAAGTCTCTGCCTGAAATTTAAAAGCTACTTGCGTCTTAGGGaaaaaaaaaaaaaaaaaaaaaaCCAACTTTGTAGACAAAGCAAGCAAAGAAGAGCCTAAAGCAGCCTCCTCAACATGAAATAATATTTTATAAAAATGTTGTCAATACAGATGTGGTTTACAAATATATTTTTGAGGGGTTTACTTTCTAGCTATCTCACCATGCAAGAGCAGCATGGTTTCCTTAACTTTGGAACTTGCTTTATGTATCCACCAATAGGTATCACCTACTGGCCTATGAGTGGCATGAGCTAGGGCCTGTGGTAGAACATACTCTGGCTAATGTTTTATATCATATGAGAACAAAAGTCAATGTGAGGTAGATTCCTCTATGGAAA</dnaseq>| | sequence = <dnaseq>ATTGGCAGAGCAAAAAGGGAACCAAGATCTACCAGTTCATTGGTAAACACTACTCTCTAGCTATTGACAAGAAGATGCCCTGAGATTTTACGTCAATTTCTTGAAGACAGAGACAGCCAAGTCTCTGCCTGAAATTTAAAAGCTACTTGCGTCTTAGGGaaaaaaaaaaaaaaaaaaaaaaCCAACTTTGTAGACAAAGCAAGCAAAGAAGAGCCTAAAGCAGCCTCCTCAACATGAAATAATATTTTATAAAAATGTTGTCAATACAGATGTGGTTTACAAATATATTTTTGAGGGGTTTACTTTCTAGCTATCTCACCATGCAAGAGCAGCATGGTTTCCTTAACTTTGGAACTTGCTTTATGTATCCACCAATAGGTATCACCTACTGGCCTATGAGTGGCATGAGCTAGGGCCTGTGGTAGAACATACTCTGGCTAATGTTTTATATCATATGAGAACAAAAGTCAATGTGAGGTAGATTCCTCTATGGAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG040934]] |
Revision as of 08:35, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT102562 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
496 nt |
| Genomic location |
chr5+:85698283..85698778 |
| Exon number |
1 |
| Exons |
85698283..85698778 |
| Genome context |
|
| Sequence |
000001 ATTGGCAGAG CAAAAAGGGA ACCAAGATCT ACCAGTTCAT TGGTAAACAC TACTCTCTAG CTATTGACAA GAAGATGCCC 000080
000081 TGAGATTTTA CGTCAATTTC TTGAAGACAG AGACAGCCAA GTCTCTGCCT GAAATTTAAA AGCTACTTGC GTCTTAGGGa 000160 000161 aaaaaaaaaa aaaaaaaaaa aCCAACTTTG TAGACAAAGC AAGCAAAGAA GAGCCTAAAG CAGCCTCCTC AACATGAAAT 000240 000241 AATATTTTAT AAAAATGTTG TCAATACAGA TGTGGTTTAC AAATATATTT TTGAGGGGTT TACTTTCTAG CTATCTCACC 000320 000321 ATGCAAGAGC AGCATGGTTT CCTTAACTTT GGAACTTGCT TTATGTATCC ACCAATAGGT ATCACCTACT GGCCTATGAG 000400 000401 TGGCATGAGC TAGGGCCTGT GGTAGAACAT ACTCTGGCTA ATGTTTTATA TCATATGAGA ACAAAAGTCA ATGTGAGGTA 000480 000481 GATTCCTCTA TGGAAA |
Predicted Small Protein
| Name | NONHSAT102562_smProtein_254:412 |
| Length | 53 |
| Molecular weight | 6089.1546 |
| Aromaticity | 0.192307692308 |
| Instability index | 43.0365384615 |
| Isoelectric point | 6.49713134766 |
| Runs | 8 |
| Runs residual | 0.00347674923946 |
| Runs probability | 0.0326576576577 |
| Amino acid sequence | MLSIQMWFTNIFLRGLLSSYLTMQEQHGFLNFGTCFMYPPIGITYWPMSGMS |
| Secondary structure | LLLEEHHHHHHHHHHHHHHHHHHHHHHLLLLLLEEEEELLLLEEEELLLLLL |
| PRMN | - |
| PiMo | - |
