Difference between revisions of "ENST00000567108.1"
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sequence = <dnaseq>TTTGCTGATGAACTCGTTGACCGTCATGAGGGTCTGGGACCATTCCTCATCTGTGTACCTCGAACCAACTTCCACTGGGACAGTTCGGCAGCCAGCGATCTCCTGGATATACTCCAAACTAGCAGAAAGACACACATTGGCATCGTCACTGCTAATATCTGTTGGGCATAGTACTAAGTGTGCTTTGCATGTGGTCCCCTTTCATCCTCGGAAAACCTCACGTGCAGAGACAAGGACTGTCATCCCCAGCTTCACTGATGAGGAACCGGCATGGAGAGGTGGGGCTCCCTGCTCAAGGCTGTGTGGCTCATACACAGTGCTGTGCAGCTTTGCAGACAGGGCCGGTAAGTCTGGTTGGCTGGGCTGCTCTAGTTCCCTGCTTGCCAACAGCCTCCTCACTTCTTTCTTTGCTCATTTTGTCACTAAGCTGAGAAACCTTTGAACAAATAGCGGACAGCGTGGCAGGTGGCAGTCTCCTGGACTCTGCCCTCTAGCCTGGGACTGATTCCAGGCCTCATCAGTTACAGGCCAGGGGATCTGAGGCAGGTTACTGAACCCGAGTCCTTGATCCCCATTTACAGAATGGGGGTGATGACAACACCTGTCCTAGTGCCAGGTACGTAGTAAAATGCTTAATGAAGCCTTGCTGTGAGGAGAGCTCCTGCAATGAGAATTCCTCCACATGTGTCAGCGGGTACCATTCCCTCCGCGAAACCACAAAACAGGCGGACTCCATCTACCTTCCTGGAGAGATGCCTCCTTATTTCCAAACTCATGCAGAGCCGCGGCATGACAGCCACGCTCCAGCTGCCTGATCTGATCTCCCCATCATGATTCTGAGAAAGGACTAGAAACAAACACAAGAGACCACAGAATCCCTCAGAGAGAGAGGGGCTGTCTCTTGGGTTATTTCTGCTCTTAGCTTCAGGGCCCTGAGATGGTCTGAAATTGCTAGGATCCTGTAAAATTGCATAACAGAAACATTCTAGGACTGCCACTTAGGGACTCATTAAAAAACCGCTTAAGGCGAGCAAGGTAGAAGGTAAGAATCCCATAACCTGCGGCATAAATTCAGAGCACCTTACTTTTCACTCTTTTTTAACCCCTTGGCAATCAGTCAAGGGCTGCTAGTGAAGCATCTACAAGGTTGCATTTCCCTGGGGATGGTCGGGAGGAATTCAGGGAGCCCTGGGGAACGCTAAAATGGGAAAAGGGACCTCACCTCCCTCAGCGACCACCCACCTCCACTTCTGCATGCACGGCCAGTGGTCAGCCACGCCTTTCAGGATCACGGGCCTCCCTGGAACCAAAAACTGCTCCCTGAAATGCTGGAGGGACGGACGGTGCAGCCGGGGGACTGTTTTTTCTAACTTCACATCTGGAATCAAACCATGGTCCGCCCTTGCTTTCTGTTTAAAATCAAAACAGAACAAAATAGCAACCACCTCAGGAAGTCGACATTTGAGGTATTCCACCAGGAACCTGTGTCAGGGGTAGGAGAGCTTAGCTGTCAAGAGTACCAGTAACAACAATAGACAACGTTTGTTATTATTACTGCTACTATTACTATTTGCTCCTCATGAGATCAAGGTGGTTTTTTTCTTAACCATTTCATCAAAAATGTTTGTTTCATTATAAACTGCTTTCACAGACATTCTGCAATAAAGGAAAACTTACTATCTCC</dnaseq>| | sequence = <dnaseq>TTTGCTGATGAACTCGTTGACCGTCATGAGGGTCTGGGACCATTCCTCATCTGTGTACCTCGAACCAACTTCCACTGGGACAGTTCGGCAGCCAGCGATCTCCTGGATATACTCCAAACTAGCAGAAAGACACACATTGGCATCGTCACTGCTAATATCTGTTGGGCATAGTACTAAGTGTGCTTTGCATGTGGTCCCCTTTCATCCTCGGAAAACCTCACGTGCAGAGACAAGGACTGTCATCCCCAGCTTCACTGATGAGGAACCGGCATGGAGAGGTGGGGCTCCCTGCTCAAGGCTGTGTGGCTCATACACAGTGCTGTGCAGCTTTGCAGACAGGGCCGGTAAGTCTGGTTGGCTGGGCTGCTCTAGTTCCCTGCTTGCCAACAGCCTCCTCACTTCTTTCTTTGCTCATTTTGTCACTAAGCTGAGAAACCTTTGAACAAATAGCGGACAGCGTGGCAGGTGGCAGTCTCCTGGACTCTGCCCTCTAGCCTGGGACTGATTCCAGGCCTCATCAGTTACAGGCCAGGGGATCTGAGGCAGGTTACTGAACCCGAGTCCTTGATCCCCATTTACAGAATGGGGGTGATGACAACACCTGTCCTAGTGCCAGGTACGTAGTAAAATGCTTAATGAAGCCTTGCTGTGAGGAGAGCTCCTGCAATGAGAATTCCTCCACATGTGTCAGCGGGTACCATTCCCTCCGCGAAACCACAAAACAGGCGGACTCCATCTACCTTCCTGGAGAGATGCCTCCTTATTTCCAAACTCATGCAGAGCCGCGGCATGACAGCCACGCTCCAGCTGCCTGATCTGATCTCCCCATCATGATTCTGAGAAAGGACTAGAAACAAACACAAGAGACCACAGAATCCCTCAGAGAGAGAGGGGCTGTCTCTTGGGTTATTTCTGCTCTTAGCTTCAGGGCCCTGAGATGGTCTGAAATTGCTAGGATCCTGTAAAATTGCATAACAGAAACATTCTAGGACTGCCACTTAGGGACTCATTAAAAAACCGCTTAAGGCGAGCAAGGTAGAAGGTAAGAATCCCATAACCTGCGGCATAAATTCAGAGCACCTTACTTTTCACTCTTTTTTAACCCCTTGGCAATCAGTCAAGGGCTGCTAGTGAAGCATCTACAAGGTTGCATTTCCCTGGGGATGGTCGGGAGGAATTCAGGGAGCCCTGGGGAACGCTAAAATGGGAAAAGGGACCTCACCTCCCTCAGCGACCACCCACCTCCACTTCTGCATGCACGGCCAGTGGTCAGCCACGCCTTTCAGGATCACGGGCCTCCCTGGAACCAAAAACTGCTCCCTGAAATGCTGGAGGGACGGACGGTGCAGCCGGGGGACTGTTTTTTCTAACTTCACATCTGGAATCAAACCATGGTCCGCCCTTGCTTTCTGTTTAAAATCAAAACAGAACAAAATAGCAACCACCTCAGGAAGTCGACATTTGAGGTATTCCACCAGGAACCTGTGTCAGGGGTAGGAGAGCTTAGCTGTCAAGAGTACCAGTAACAACAATAGACAACGTTTGTTATTATTACTGCTACTATTACTATTTGCTCCTCATGAGATCAAGGTGGTTTTTTTCTTAACCATTTCATCAAAAATGTTTGTTTCATTATAAACTGCTTTCACAGACATTCTGCAATAAAGGAAAACTTACTATCTCC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:lnc-NSMCE1-1]] | + | [[Category:Antisense]][[Category:lnc-NSMCE1-1]][[Category:NONHSAG018958]] |
Revision as of 08:52, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000567108.1 |
Source |
Gencode19 |
Same with |
lnc-NSMCE1-1:1,NONHSAT141432 |
Classification |
antisense |
Length |
1684 nt |
Genomic location |
chr16-:27224631..27226314 |
Exon number |
1 |
Exons |
27224631..27226314 |
Genome context |
|
Sequence |
000001 TTTGCTGATG AACTCGTTGA CCGTCATGAG GGTCTGGGAC CATTCCTCAT CTGTGTACCT CGAACCAACT TCCACTGGGA 000080
000081 CAGTTCGGCA GCCAGCGATC TCCTGGATAT ACTCCAAACT AGCAGAAAGA CACACATTGG CATCGTCACT GCTAATATCT 000160 000161 GTTGGGCATA GTACTAAGTG TGCTTTGCAT GTGGTCCCCT TTCATCCTCG GAAAACCTCA CGTGCAGAGA CAAGGACTGT 000240 000241 CATCCCCAGC TTCACTGATG AGGAACCGGC ATGGAGAGGT GGGGCTCCCT GCTCAAGGCT GTGTGGCTCA TACACAGTGC 000320 000321 TGTGCAGCTT TGCAGACAGG GCCGGTAAGT CTGGTTGGCT GGGCTGCTCT AGTTCCCTGC TTGCCAACAG CCTCCTCACT 000400 000401 TCTTTCTTTG CTCATTTTGT CACTAAGCTG AGAAACCTTT GAACAAATAG CGGACAGCGT GGCAGGTGGC AGTCTCCTGG 000480 000481 ACTCTGCCCT CTAGCCTGGG ACTGATTCCA GGCCTCATCA GTTACAGGCC AGGGGATCTG AGGCAGGTTA CTGAACCCGA 000560 000561 GTCCTTGATC CCCATTTACA GAATGGGGGT GATGACAACA CCTGTCCTAG TGCCAGGTAC GTAGTAAAAT GCTTAATGAA 000640 000641 GCCTTGCTGT GAGGAGAGCT CCTGCAATGA GAATTCCTCC ACATGTGTCA GCGGGTACCA TTCCCTCCGC GAAACCACAA 000720 000721 AACAGGCGGA CTCCATCTAC CTTCCTGGAG AGATGCCTCC TTATTTCCAA ACTCATGCAG AGCCGCGGCA TGACAGCCAC 000800 000801 GCTCCAGCTG CCTGATCTGA TCTCCCCATC ATGATTCTGA GAAAGGACTA GAAACAAACA CAAGAGACCA CAGAATCCCT 000880 000881 CAGAGAGAGA GGGGCTGTCT CTTGGGTTAT TTCTGCTCTT AGCTTCAGGG CCCTGAGATG GTCTGAAATT GCTAGGATCC 000960 000961 TGTAAAATTG CATAACAGAA ACATTCTAGG ACTGCCACTT AGGGACTCAT TAAAAAACCG CTTAAGGCGA GCAAGGTAGA 001040 001041 AGGTAAGAAT CCCATAACCT GCGGCATAAA TTCAGAGCAC CTTACTTTTC ACTCTTTTTT AACCCCTTGG CAATCAGTCA 001120 001121 AGGGCTGCTA GTGAAGCATC TACAAGGTTG CATTTCCCTG GGGATGGTCG GGAGGAATTC AGGGAGCCCT GGGGAACGCT 001200 001201 AAAATGGGAA AAGGGACCTC ACCTCCCTCA GCGACCACCC ACCTCCACTT CTGCATGCAC GGCCAGTGGT CAGCCACGCC 001280 001281 TTTCAGGATC ACGGGCCTCC CTGGAACCAA AAACTGCTCC CTGAAATGCT GGAGGGACGG ACGGTGCAGC CGGGGGACTG 001360 001361 TTTTTTCTAA CTTCACATCT GGAATCAAAC CATGGTCCGC CCTTGCTTTC TGTTTAAAAT CAAAACAGAA CAAAATAGCA 001440 001441 ACCACCTCAG GAAGTCGACA TTTGAGGTAT TCCACCAGGA ACCTGTGTCA GGGGTAGGAG AGCTTAGCTG TCAAGAGTAC 001520 001521 CAGTAACAAC AATAGACAAC GTTTGTTATT ATTACTGCTA CTATTACTAT TTGCTCCTCA TGAGATCAAG GTGGTTTTTT 001600 001601 TCTTAACCAT TTCATCAAAA ATGTTTGTTT CATTATAAAC TGCTTTCACA GACATTCTGC AATAAAGGAA AACTTACTAT 001680 001681 CTCC |
Predicted Small Protein
Name | ENST00000567108.1_smProtein_188:430 |
Length | 81 |
Molecular weight | 8331.7634 |
Aromaticity | 0.0375 |
Instability index | 45.70375 |
Isoelectric point | 8.96783447266 |
Runs | 10 |
Runs residual | 0.0138157894737 |
Runs probability | 0.0580462815757 |
Amino acid sequence | MWSPFILGKPHVQRQGLSSPASLMRNRHGEVGLPAQGCVAHTQCCAALQTGPVSLVGWAA LVPCLPTASSLLSLLILSLS |
Secondary structure | LLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHLLLLEEEEHHH HLLLLLLHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHH HHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTT TTTTTTTTTTTTTToooooo |